Gvermi12866.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12866.t1
Unique NameGvermi12866.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1843725..1845342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G1I4
Preferred nameFLOT2
PFAMsBand_7,Flot
Max annot lvl2759|Eukaryota
KEGG koko:K07192
KEGG Pathwayko04910,map04910
GOsGO:0001666,GO:0001669,GO:0001765,GO:0001931,GO:0002020,GO:0002080,GO:0002252,GO:0002376,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002791,GO:0002793,GO:0003674,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0005901,GO:0005911,GO:0005912,GO:0005913,GO:0006582,GO:0006725,GO:0006810,GO:0006897,GO:0006950,GO:0006952,GO:0006955,GO:0007155,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008544,GO:0009506,GO:0009628,GO:0009877,GO:0009888,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010324,GO:0010468,GO:0010470,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016324,GO:0016600,GO:0018958,GO:0019222,GO:0019748,GO:0019899,GO:0022407,GO:0022409,GO:0022603,GO:0022607,GO:0022610,GO:0022622,GO:0023051,GO:0023056,GO:0030027,GO:0030054,GO:0030111,GO:0030139,GO:0030141,GO:0030155,GO:0030177,GO:0030659,GO:0030667,GO:0031090,GO:0031252,GO:0031254,GO:0031410,GO:0031579,GO:0031647,GO:0031982,GO:0032501,GO:0032502,GO:0032878,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0035006,GO:0035010,GO:0035011,GO:0035254,GO:0035255,GO:0035592,GO:0035593,GO:0036293,GO:0036294,GO:0042221,GO:0042440,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044091,GO:0044237,GO:0044291,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044853,GO:0044860,GO:0045087,GO:0045121,GO:0045177,GO:0045184,GO:0045595,GO:0045661,GO:0045785,GO:0045995,GO:0046982,GO:0046983,GO:0048364,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050708,GO:0050714,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051172,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051246,GO:0051248,GO:0051249,GO:0051251,GO:0051641,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0061024,GO:0061356,GO:0061357,GO:0065007,GO:0065008,GO:0070161,GO:0070201,GO:0070482,GO:0070727,GO:0070887,GO:0071453,GO:0071456,GO:0071692,GO:0071704,GO:0071709,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0080090,GO:0090087,GO:0097223,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0099402,GO:0099503,GO:0120025,GO:1901360,GO:1901615,GO:1902991,GO:1902992,GO:1903037,GO:1903039,GO:1903044,GO:1903530,GO:1903532,GO:1903903,GO:1903905,GO:1904086,GO:1904951,GO:1905330,GO:1990778,GO:2000026,GO:2000047,GO:2000114
Evalue5.34e-50
EggNOG OGsCOG2268@1|root,KOG2668@2759|Eukaryota
Descriptionprotein localization to membrane raft
COG categoryU
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12866Gvermi12866Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1843725..1845342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12866.t1Gvermi12866.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1843725..1845342 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12866.t1.stop1Gvermi12866.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1843725..1843727 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12866.t1.CDS1Gvermi12866.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1843725..1843992 -
Gvermi12866.t1.CDS2Gvermi12866.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1844081..1845342 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12866.t1.exon1Gvermi12866.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1843725..1843992 -
Gvermi12866.t1.exon2Gvermi12866.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1844081..1845342 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12866.t1.intron1Gvermi12866.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1843993..1844080 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12866.t1.start1Gvermi12866.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1845340..1845342 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12866.t1 ID=Gvermi12866.t1|Name=Gvermi12866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=510bp
MPSFLRGFVYTAGPNTALIKSSGKKQVSVIIGGRMFAIPFLQRVDRLGLE
LRTITVHTEHGTTVNGVSVNVTSCCQVKIQGWSSSEDDGEELPPHHARVA
GDLHMDQSAIRLAAQHFIGKRDADIEDSIQKTVAGHQRAIIGSLTVEELY
RDRATFSRRVLELCHNDMRNMGLTIVSYTVAEISDDKGYIEALGVAPTEN
VKRNAVEGRAMHQSEAVARKTVEETKAKVQMNEQEQVKIVSEQQTKIKKA
EAQKEIDKFTAAQKKAFDIADAEQDKILLVKKKQATAAEAQAELLVMKQY
VEKERLRKEQVVHVEADAKLYKARVDADGVRATAAADAEMIRMIGNAEAE
KQSVTVEKVGVAKAEVEAEMVRRVGDASAEVIRAKGEAEVAVELRRAEAV
RARGMAENDVLERKLQIWQQHANYGVLLEKMIDMMPQVAGALAEPLAKTE
KMVFVSGGSNSGSGPSQFTREMTRMVAEVPEAIQALTNCDIRQGLANLAN
GKLSNKLTA*
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spliced messenger RNA

>Gvermi12866.t1 ID=Gvermi12866.t1|Name=Gvermi12866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at ScGOVlb_425:1843725..1845342- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCCTTCCTCAGAGGCTTCGTGTACACGGCCGGGCCCAACACGGC
GCTCATCAAGTCGTCCGGCAAGAAGCAGGTGTCCGTCATCATCGGCGGGC
GCATGTTCGCCATCCCCTTCCTGCAGCGCGTGGACCGGCTGGGGCTGGAG
CTGCGCACCATCACGGTGCACACCGAGCACGGCACCACCGTGAACGGCGT
GAGCGTCAACGTCACGTCGTGCTGCCAGGTGAAGATCCAGGGCTGGTCGT
CGTCCGAGGACGACGGCGAGGAGCTGCCGCCGCACCACGCGCGCGTGGCG
GGCGACCTGCACATGGACCAGTCGGCCATCCGGCTGGCGGCGCAGCACTT
CATCGGCAAGAGGGACGCCGACATCGAGGACTCCATCCAGAAGACGGTGG
CCGGGCACCAGCGCGCCATCATCGGCTCGCTGACCGTGGAGGAGCTGTAC
CGCGACCGCGCCACGTTCTCGCGGCGCGTGCTGGAGCTGTGCCACAACGA
CATGCGCAACATGGGCCTGACGATTGTGTCGTACACCGTGGCGGAGATCA
GCGACGACAAGGGCTACATCGAGGCGCTGGGCGTGGCGCCCACCGAAAAC
GTGAAGCGCAACGCCGTGGAGGGGCGCGCCATGCACCAGAGCGAGGCGGT
GGCGCGCAAGACGGTGGAGGAAACCAAGGCCAAGGTGCAGATGAACGAGC
AGGAGCAGGTCAAAATCGTGTCGGAGCAGCAGACCAAGATCAAGAAGGCC
GAGGCGCAGAAGGAAATCGACAAGTTCACGGCGGCGCAGAAGAAGGCGTT
CGACATTGCGGACGCCGAGCAGGACAAGATCCTGCTGGTGAAGAAGAAGC
AGGCGACGGCGGCAGAGGCGCAGGCCGAGCTGCTGGTGATGAAGCAGTAC
GTGGAAAAGGAGCGGCTGCGCAAGGAGCAGGTGGTGCACGTGGAGGCGGA
CGCCAAGTTGTACAAGGCGCGCGTGGACGCGGACGGGGTGCGCGCGACGG
CGGCGGCCGACGCGGAGATGATCAGAATGATTGGCAATGCGGAGGCGGAG
AAGCAGAGCGTGACTGTGGAGAAGGTGGGCGTGGCCAAGGCGGAGGTGGA
GGCCGAGATGGTGAGGCGCGTGGGCGACGCCAGCGCTGAGGTGATTCGCG
CCAAGGGCGAGGCCGAGGTGGCGGTGGAGCTGAGGAGAGCGGAGGCGGTG
CGTGCCAGGGGGATGGCGGAAAATGATGTTTTGGAGAGAAAACTGCAAAT
ATGGCAACAACACGCCAACTACGGTGTGCTTCTGGAGAAGATGATCGACA
TGATGCCGCAAGTGGCCGGGGCGCTGGCGGAGCCGCTCGCCAAGACGGAG
AAGATGGTGTTCGTGAGCGGCGGCAGCAACAGCGGCAGCGGCCCGTCTCA
GTTCACGCGCGAGATGACGCGCATGGTGGCGGAGGTTCCGGAGGCCATCC
AGGCGCTGACCAACTGCGACATTCGGCAGGGGCTGGCCAACCTGGCCAAC
GGCAAGCTCAGCAACAAACTGACCGCGTGA
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protein sequence of Gvermi12866.t1

>Gvermi12866.t1 ID=Gvermi12866.t1|Name=Gvermi12866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=510bp
MPSFLRGFVYTAGPNTALIKSSGKKQVSVIIGGRMFAIPFLQRVDRLGLE
LRTITVHTEHGTTVNGVSVNVTSCCQVKIQGWSSSEDDGEELPPHHARVA
GDLHMDQSAIRLAAQHFIGKRDADIEDSIQKTVAGHQRAIIGSLTVEELY
RDRATFSRRVLELCHNDMRNMGLTIVSYTVAEISDDKGYIEALGVAPTEN
VKRNAVEGRAMHQSEAVARKTVEETKAKVQMNEQEQVKIVSEQQTKIKKA
EAQKEIDKFTAAQKKAFDIADAEQDKILLVKKKQATAAEAQAELLVMKQY
VEKERLRKEQVVHVEADAKLYKARVDADGVRATAAADAEMIRMIGNAEAE
KQSVTVEKVGVAKAEVEAEMVRRVGDASAEVIRAKGEAEVAVELRRAEAV
RARGMAENDVLERKLQIWQQHANYGVLLEKMIDMMPQVAGALAEPLAKTE
KMVFVSGGSNSGSGPSQFTREMTRMVAEVPEAIQALTNCDIRQGLANLAN
GKLSNKLTA*
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mRNA from alignment at ScGOVlb_425:1843725..1845342-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12866.t1 ID=Gvermi12866.t1|Name=Gvermi12866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1618bp|location=Sequence derived from alignment at ScGOVlb_425:1843725..1845342- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCCTTCCTCAGAGGCTTCGTGTACACGGCCGGGCCCAACACGGC
GCTCATCAAGTCGTCCGGCAAGAAGCAGGTGTCCGTCATCATCGGCGGGC
GCATGTTCGCCATCCCCTTCCTGCAGCGCGTGGACCGGCTGGGGCTGGAG
CTGCGCACCATCACGGTGCACACCGAGCACGGCACCACCGTGAACGGCGT
GAGCGTCAACGTCACGTCGTGCTGCCAGGTGAAGATCCAGGGCTGGTCGT
CGTCCGAGGACGACGGCGAGGAGCTGCCGCCGCACCACGCGCGCGTGGCG
GGCGACCTGCACATGGACCAGTCGGCCATCCGGCTGGCGGCGCAGCACTT
CATCGGCAAGAGGGACGCCGACATCGAGGACTCCATCCAGAAGACGGTGG
CCGGGCACCAGCGCGCCATCATCGGCTCGCTGACCGTGGAGGAGCTGTAC
CGCGACCGCGCCACGTTCTCGCGGCGCGTGCTGGAGCTGTGCCACAACGA
CATGCGCAACATGGGCCTGACGATTGTGTCGTACACCGTGGCGGAGATCA
GCGACGACAAGGGCTACATCGAGGCGCTGGGCGTGGCGCCCACCGAAAAC
GTGAAGCGCAACGCCGTGGAGGGGCGCGCCATGCACCAGAGCGAGGCGGT
GGCGCGCAAGACGGTGGAGGAAACCAAGGCCAAGGTGCAGATGAACGAGC
AGGAGCAGGTCAAAATCGTGTCGGAGCAGCAGACCAAGATCAAGAAGGCC
GAGGCGCAGAAGGAAATCGACAAGTTCACGGCGGCGCAGAAGAAGGCGTT
CGACATTGCGGACGCCGAGCAGGACAAGATCCTGCTGGTGAAGAAGAAGC
AGGCGACGGCGGCAGAGGCGCAGGCCGAGCTGCTGGTGATGAAGCAGTAC
GTGGAAAAGGAGCGGCTGCGCAAGGAGCAGGTGGTGCACGTGGAGGCGGA
CGCCAAGTTGTACAAGGCGCGCGTGGACGCGGACGGGGTGCGCGCGACGG
CGGCGGCCGACGCGGAGATGATCAGAATGATTGGCAATGCGGAGGCGGAG
AAGCAGAGCGTGACTGTGGAGAAGGTGGGCGTGGCCAAGGCGGAGGTGGA
GGCCGAGATGGTGAGGCGCGTGGGCGACGCCAGCGCTGAGGTGATTCGCG
CCAAGGGCGAGGCCGAGGTGGCGGTGGAGCTGAGGAGAGCGGAGGCGGTG
CGTGCCAGGGGGATGGCGGAAAATGATGTTTTGGAGAGAAAACTGCAAAT
ATGGCAACAACAGTACGTGTCCACGGCTTGGCGGCGCAAGCGGCGGCGTT
TGCAGCAAAATACTCACTTTTTTGTTTTTGTTTTTGCGACTGTCGCGTAG
CGCCAACTACGGTGTGCTTCTGGAGAAGATGATCGACATGATGCCGCAAG
TGGCCGGGGCGCTGGCGGAGCCGCTCGCCAAGACGGAGAAGATGGTGTTC
GTGAGCGGCGGCAGCAACAGCGGCAGCGGCCCGTCTCAGTTCACGCGCGA
GATGACGCGCATGGTGGCGGAGGTTCCGGAGGCCATCCAGGCGCTGACCA
ACTGCGACATTCGGCAGGGGCTGGCCAACCTGGCCAACGGCAAGCTCAGC
AACAAACTGACCGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1843725..1845342-

>Gvermi12866.t1 ID=Gvermi12866.t1|Name=Gvermi12866.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1530bp|location=Sequence derived from alignment at ScGOVlb_425:1843725..1845342- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTCCTTCCTCAGAGGCTTCGTGTACACGGCCGGGCCCAACACGGC
GCTCATCAAGTCGTCCGGCAAGAAGCAGGTGTCCGTCATCATCGGCGGGC
GCATGTTCGCCATCCCCTTCCTGCAGCGCGTGGACCGGCTGGGGCTGGAG
CTGCGCACCATCACGGTGCACACCGAGCACGGCACCACCGTGAACGGCGT
GAGCGTCAACGTCACGTCGTGCTGCCAGGTGAAGATCCAGGGCTGGTCGT
CGTCCGAGGACGACGGCGAGGAGCTGCCGCCGCACCACGCGCGCGTGGCG
GGCGACCTGCACATGGACCAGTCGGCCATCCGGCTGGCGGCGCAGCACTT
CATCGGCAAGAGGGACGCCGACATCGAGGACTCCATCCAGAAGACGGTGG
CCGGGCACCAGCGCGCCATCATCGGCTCGCTGACCGTGGAGGAGCTGTAC
CGCGACCGCGCCACGTTCTCGCGGCGCGTGCTGGAGCTGTGCCACAACGA
CATGCGCAACATGGGCCTGACGATTGTGTCGTACACCGTGGCGGAGATCA
GCGACGACAAGGGCTACATCGAGGCGCTGGGCGTGGCGCCCACCGAAAAC
GTGAAGCGCAACGCCGTGGAGGGGCGCGCCATGCACCAGAGCGAGGCGGT
GGCGCGCAAGACGGTGGAGGAAACCAAGGCCAAGGTGCAGATGAACGAGC
AGGAGCAGGTCAAAATCGTGTCGGAGCAGCAGACCAAGATCAAGAAGGCC
GAGGCGCAGAAGGAAATCGACAAGTTCACGGCGGCGCAGAAGAAGGCGTT
CGACATTGCGGACGCCGAGCAGGACAAGATCCTGCTGGTGAAGAAGAAGC
AGGCGACGGCGGCAGAGGCGCAGGCCGAGCTGCTGGTGATGAAGCAGTAC
GTGGAAAAGGAGCGGCTGCGCAAGGAGCAGGTGGTGCACGTGGAGGCGGA
CGCCAAGTTGTACAAGGCGCGCGTGGACGCGGACGGGGTGCGCGCGACGG
CGGCGGCCGACGCGGAGATGATCAGAATGATTGGCAATGCGGAGGCGGAG
AAGCAGAGCGTGACTGTGGAGAAGGTGGGCGTGGCCAAGGCGGAGGTGGA
GGCCGAGATGGTGAGGCGCGTGGGCGACGCCAGCGCTGAGGTGATTCGCG
CCAAGGGCGAGGCCGAGGTGGCGGTGGAGCTGAGGAGAGCGGAGGCGGTG
CGTGCCAGGGGGATGGCGGAAAATGATGTTTTGGAGAGAAAACTGCAAAT
ATGGCAACAACACGCCAACTACGGTGTGCTTCTGGAGAAGATGATCGACA
TGATGCCGCAAGTGGCCGGGGCGCTGGCGGAGCCGCTCGCCAAGACGGAG
AAGATGGTGTTCGTGAGCGGCGGCAGCAACAGCGGCAGCGGCCCGTCTCA
GTTCACGCGCGAGATGACGCGCATGGTGGCGGAGGTTCCGGAGGCCATCC
AGGCGCTGACCAACTGCGACATTCGGCAGGGGCTGGCCAACCTGGCCAAC
GGCAAGCTCAGCAACAAACTGACCGCGTGA
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