Gvermi12865.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12865.t1
Unique NameGvermi12865.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length99
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1840395..1840793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CME004CT
Preferred nameNFATC2IP
PFAMsRad60-SLD
Max annot lvl2759|Eukaryota
KEGG koko:K12160
KEGG Pathwayko03013,ko05418,map03013,map05418
KEGG ModuleM00427
GOsGO:0000724,GO:0000725,GO:0001816,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006355,GO:0006357,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016925,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031386,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0033554,GO:0034399,GO:0034641,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:1901360,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue1.19e-30
EggNOG OGsCOG5227@1|root,KOG1769@2759|Eukaryota
DescriptionSmall ubiquitinrelated modifier
COG categoryO
BRITEko00000,ko00001,ko00002,ko03019,ko03029,ko04121,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12865Gvermi12865Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1840395..1840793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12865.t1Gvermi12865.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1840395..1840793 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12865.t1.stop1Gvermi12865.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1840395..1840397 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12865.t1.CDS1Gvermi12865.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1840395..1840613 -
Gvermi12865.t1.CDS2Gvermi12865.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1840716..1840793 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12865.t1.exon1Gvermi12865.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1840395..1840613 -
Gvermi12865.t1.exon2Gvermi12865.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1840716..1840793 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12865.t1.intron1Gvermi12865.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1840614..1840715 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12865.t1.start1Gvermi12865.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1840791..1840793 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12865.t1 ID=Gvermi12865.t1|Name=Gvermi12865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=99bp
MAEKAPEDSKANVDTKPEPGEQINIKVRDAEGNEVQFKIKKTTQLKKLMD
AYCARMGTTKGAYRFLFDGHRINDEDTPESLDMQELDCVDAMVSQLGG*
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spliced messenger RNA

>Gvermi12865.t1 ID=Gvermi12865.t1|Name=Gvermi12865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=297bp|location=Sequence derived from alignment at ScGOVlb_425:1840395..1840793- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAAAAGGCGCCCGAGGACTCAAAAGCCAATGTCGACACCAAGCC
CGAGCCCGGCGAACAGATCAACATCAAGGTGCGCGACGCCGAGGGAAACG
AGGTGCAGTTCAAAATCAAAAAGACCACGCAGCTGAAGAAACTCATGGAC
GCGTACTGCGCGCGCATGGGAACCACCAAGGGCGCCTACCGCTTCCTCTT
CGACGGCCACAGAATCAACGACGAGGACACCCCCGAGTCGCTTGACATGC
AGGAACTCGACTGCGTCGACGCCATGGTCTCGCAACTGGGCGGTTAA
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protein sequence of Gvermi12865.t1

>Gvermi12865.t1 ID=Gvermi12865.t1|Name=Gvermi12865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=99bp
MAEKAPEDSKANVDTKPEPGEQINIKVRDAEGNEVQFKIKKTTQLKKLMD
AYCARMGTTKGAYRFLFDGHRINDEDTPESLDMQELDCVDAMVSQLGG*
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mRNA from alignment at ScGOVlb_425:1840395..1840793-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12865.t1 ID=Gvermi12865.t1|Name=Gvermi12865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=399bp|location=Sequence derived from alignment at ScGOVlb_425:1840395..1840793- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGAAAAGGCGCCCGAGGACTCAAAAGCCAATGTCGACACCAAGCC
CGAGCCCGGCGAACAGATCAACATCAAGGTACGCTGCCGCACCCGTTCGC
CCCCCTCGCGCTCCACCGCCCACTAACCTCCCCCGCCCCCCGTCCCACTC
TCGCCCGCACCCCCGCCGCCATCGCCGCAGGTGCGCGACGCCGAGGGAAA
CGAGGTGCAGTTCAAAATCAAAAAGACCACGCAGCTGAAGAAACTCATGG
ACGCGTACTGCGCGCGCATGGGAACCACCAAGGGCGCCTACCGCTTCCTC
TTCGACGGCCACAGAATCAACGACGAGGACACCCCCGAGTCGCTTGACAT
GCAGGAACTCGACTGCGTCGACGCCATGGTCTCGCAACTGGGCGGTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1840395..1840793-

>Gvermi12865.t1 ID=Gvermi12865.t1|Name=Gvermi12865.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=297bp|location=Sequence derived from alignment at ScGOVlb_425:1840395..1840793- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGAAAAGGCGCCCGAGGACTCAAAAGCCAATGTCGACACCAAGCC
CGAGCCCGGCGAACAGATCAACATCAAGGTGCGCGACGCCGAGGGAAACG
AGGTGCAGTTCAAAATCAAAAAGACCACGCAGCTGAAGAAACTCATGGAC
GCGTACTGCGCGCGCATGGGAACCACCAAGGGCGCCTACCGCTTCCTCTT
CGACGGCCACAGAATCAACGACGAGGACACCCCCGAGTCGCTTGACATGC
AGGAACTCGACTGCGTCGACGCCATGGTCTCGCAACTGGGCGGTTAA
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