Gvermi12859.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12859.t1
Unique Name	Gvermi12859.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	507

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1823967..1825487 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9361.ENSDNOP00000006243
Preferred name	FH
PFAMs	FumaraseC_C,Lyase_1
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00443
KEGG ko	ko:K01679
KEGG Reaction	R01082
KEGG Pathway	ko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko04934,ko05200,ko05211,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200,map04934,map05200,map05211
KEGG Module	M00009,M00011,M00173,M00376
GOs	GO:0001894,GO:0003674,GO:0003824,GO:0004333,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006106,GO:0006108,GO:0008150,GO:0008152,GO:0009060,GO:0009987,GO:0015980,GO:0016829,GO:0016835,GO:0016836,GO:0016999,GO:0017144,GO:0019752,GO:0031974,GO:0032501,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0048871,GO:0048872,GO:0048873,GO:0055114,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072350
Evalue	5.89e-227
EggNOG OGs	COG0114@1\|root,KOG1317@2759\|Eukaryota,38GHX@33154\|Opisthokonta,3BB3C@33208\|Metazoa,3CUSS@33213\|Bilateria,487GR@7711\|Chordata,490UB@7742\|Vertebrata,3J6FA@40674\|Mammalia
EC	4.2.1.2
Description	Fumarate hydratase
COG category	C
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12859	Gvermi12859	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1823967..1825487 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12859.t1.stop1	Gvermi12859.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1823967..1823969 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12859.t1.CDS1	Gvermi12859.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1823967..1825487 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12859.t1.exon1	Gvermi12859.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1823967..1825487 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12859.t1.start1	Gvermi12859.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1825485..1825487 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12859.t1	Gvermi12859.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1823967..1825487 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1823967..1825487-
coding sequence from alignment at ScGOVlb_425:1823967..1825487-

mRNA sequence

>Gvermi12859.t1 ID=Gvermi12859.t1|Name=Gvermi12859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=507bp
MRSAAFTLAAMPLARAPPTLLARLLRAPRLPRPARPFHATPPAMAFRTET
DTFGEVQVPADRLWGAQTQRSISNFDICRDTDRMPLPVIHAFGVLKHATA
SANRLFGLDHSIAAAIETAAADVAAGKLDDHFPLVVWQTGSGTQSNMNVN
EVISNRAIDILGGQRGSKSPVHPNDHVNKSQSSNDTFPTAMHIALARELN
ARLIPALTSLADAFDRQARRHAHVIKIGRTHCMDAVPLTYAQQFSAYVRQ
LRQAVSRVRACLPAVYELAIGGTAVGTGLNTHAGFADSVCDKVAELTGLP
FVPAPNKFEALAAHDAVVFASGALNTAAASLMKIANDIRLLGSGPRCGLG
ELVLPENEPGSSIMPGKVNPTQCEAVTMACAQVMGNHVAITVGGCTGHFE
LNVFKPMMIHNVLHSVRLLSDCAASFERNCVEGLRVDEKRVAQLLSESLM
LVTALNPVIGYDKAAQIAKKAHKEGTTLRDAAVSLGFLSAQKFDEVVVPA
DMLGPK*

spliced messenger RNA

>Gvermi12859.t1 ID=Gvermi12859.t1|Name=Gvermi12859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_425:1823967..1825487- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGCGCCGCCTTCACCCTCGCCGCCATGCCCCTCGCCCGCGCGCC
CCCCACGCTGCTTGCCCGCCTGCTCCGCGCCCCCCGCCTTCCCCGCCCCG
CCCGCCCCTTCCACGCCACCCCCCCCGCCATGGCCTTCCGCACCGAGACC
GACACGTTTGGCGAAGTGCAGGTGCCCGCCGATCGCCTCTGGGGCGCCCA
GACCCAGCGCTCCATCTCCAACTTCGACATCTGCCGCGACACCGACCGCA
TGCCGCTGCCCGTCATTCACGCCTTCGGCGTCCTCAAGCACGCCACCGCC
TCGGCCAACCGCCTCTTCGGCCTGGACCACTCCATCGCCGCCGCCATCGA
GACCGCCGCCGCCGACGTCGCCGCCGGCAAGCTCGACGACCACTTCCCGC
TCGTCGTGTGGCAGACCGGATCGGGCACCCAGTCCAACATGAACGTCAAC
GAGGTCATCTCCAACCGCGCCATCGACATCCTGGGCGGCCAGCGCGGCTC
CAAGAGCCCGGTGCACCCCAACGACCACGTCAACAAGTCGCAGTCGTCCA
ACGACACCTTCCCCACCGCCATGCACATTGCGCTCGCGCGCGAGCTCAAC
GCGCGCCTCATCCCCGCCCTCACCTCGCTGGCCGACGCCTTCGACCGCCA
GGCGCGCCGCCACGCGCACGTCATCAAGATCGGCCGCACGCACTGCATGG
ACGCCGTGCCGCTCACGTACGCGCAGCAGTTCTCGGCGTACGTGCGCCAG
CTGCGCCAGGCCGTGTCGCGCGTGCGCGCGTGCCTGCCGGCCGTGTACGA
GCTCGCCATCGGCGGCACGGCCGTCGGCACGGGGCTCAACACGCACGCGG
GCTTTGCCGACAGCGTGTGCGACAAGGTGGCCGAGCTGACGGGGCTGCCG
TTTGTGCCGGCGCCCAACAAGTTCGAGGCGCTGGCCGCGCACGACGCCGT
CGTGTTCGCCAGCGGCGCGCTCAACACCGCCGCCGCCTCGCTCATGAAGA
TCGCCAACGACATTCGGCTGCTGGGCTCCGGCCCGCGCTGCGGGCTGGGC
GAGCTCGTGCTGCCGGAGAACGAGCCCGGCAGCTCCATCATGCCCGGCAA
GGTGAACCCCACGCAGTGCGAGGCGGTGACGATGGCGTGCGCGCAGGTGA
TGGGCAACCACGTGGCCATCACCGTCGGCGGCTGCACCGGCCACTTTGAG
CTCAACGTGTTCAAGCCCATGATGATCCACAACGTTCTACACAGCGTGCG
GCTGCTGAGCGATTGTGCCGCGTCGTTCGAACGCAACTGCGTTGAGGGAC
TGCGCGTGGACGAGAAGCGGGTGGCGCAACTGCTCTCCGAGAGCCTGATG
CTGGTGACGGCGCTCAACCCGGTGATCGGGTACGACAAGGCGGCGCAGAT
CGCCAAGAAGGCGCACAAGGAAGGCACTACACTGCGCGACGCCGCCGTGT
CGCTGGGCTTTCTGTCGGCGCAAAAGTTTGACGAGGTTGTGGTGCCCGCC
GACATGCTCGGCCCGAAGTAA

protein sequence of Gvermi12859.t1

>Gvermi12859.t1 ID=Gvermi12859.t1|Name=Gvermi12859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=507bp
MRSAAFTLAAMPLARAPPTLLARLLRAPRLPRPARPFHATPPAMAFRTET
DTFGEVQVPADRLWGAQTQRSISNFDICRDTDRMPLPVIHAFGVLKHATA
SANRLFGLDHSIAAAIETAAADVAAGKLDDHFPLVVWQTGSGTQSNMNVN
EVISNRAIDILGGQRGSKSPVHPNDHVNKSQSSNDTFPTAMHIALARELN
ARLIPALTSLADAFDRQARRHAHVIKIGRTHCMDAVPLTYAQQFSAYVRQ
LRQAVSRVRACLPAVYELAIGGTAVGTGLNTHAGFADSVCDKVAELTGLP
FVPAPNKFEALAAHDAVVFASGALNTAAASLMKIANDIRLLGSGPRCGLG
ELVLPENEPGSSIMPGKVNPTQCEAVTMACAQVMGNHVAITVGGCTGHFE
LNVFKPMMIHNVLHSVRLLSDCAASFERNCVEGLRVDEKRVAQLLSESLM
LVTALNPVIGYDKAAQIAKKAHKEGTTLRDAAVSLGFLSAQKFDEVVVPA
DMLGPK*

mRNA from alignment at ScGOVlb_425:1823967..1825487-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12859.t1 ID=Gvermi12859.t1|Name=Gvermi12859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_425:1823967..1825487- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCAGCGCCGCCTTCACCCTCGCCGCCATGCCCCTCGCCCGCGCGCC
CCCCACGCTGCTTGCCCGCCTGCTCCGCGCCCCCCGCCTTCCCCGCCCCG
CCCGCCCCTTCCACGCCACCCCCCCCGCCATGGCCTTCCGCACCGAGACC
GACACGTTTGGCGAAGTGCAGGTGCCCGCCGATCGCCTCTGGGGCGCCCA
GACCCAGCGCTCCATCTCCAACTTCGACATCTGCCGCGACACCGACCGCA
TGCCGCTGCCCGTCATTCACGCCTTCGGCGTCCTCAAGCACGCCACCGCC
TCGGCCAACCGCCTCTTCGGCCTGGACCACTCCATCGCCGCCGCCATCGA
GACCGCCGCCGCCGACGTCGCCGCCGGCAAGCTCGACGACCACTTCCCGC
TCGTCGTGTGGCAGACCGGATCGGGCACCCAGTCCAACATGAACGTCAAC
GAGGTCATCTCCAACCGCGCCATCGACATCCTGGGCGGCCAGCGCGGCTC
CAAGAGCCCGGTGCACCCCAACGACCACGTCAACAAGTCGCAGTCGTCCA
ACGACACCTTCCCCACCGCCATGCACATTGCGCTCGCGCGCGAGCTCAAC
GCGCGCCTCATCCCCGCCCTCACCTCGCTGGCCGACGCCTTCGACCGCCA
GGCGCGCCGCCACGCGCACGTCATCAAGATCGGCCGCACGCACTGCATGG
ACGCCGTGCCGCTCACGTACGCGCAGCAGTTCTCGGCGTACGTGCGCCAG
CTGCGCCAGGCCGTGTCGCGCGTGCGCGCGTGCCTGCCGGCCGTGTACGA
GCTCGCCATCGGCGGCACGGCCGTCGGCACGGGGCTCAACACGCACGCGG
GCTTTGCCGACAGCGTGTGCGACAAGGTGGCCGAGCTGACGGGGCTGCCG
TTTGTGCCGGCGCCCAACAAGTTCGAGGCGCTGGCCGCGCACGACGCCGT
CGTGTTCGCCAGCGGCGCGCTCAACACCGCCGCCGCCTCGCTCATGAAGA
TCGCCAACGACATTCGGCTGCTGGGCTCCGGCCCGCGCTGCGGGCTGGGC
GAGCTCGTGCTGCCGGAGAACGAGCCCGGCAGCTCCATCATGCCCGGCAA
GGTGAACCCCACGCAGTGCGAGGCGGTGACGATGGCGTGCGCGCAGGTGA
TGGGCAACCACGTGGCCATCACCGTCGGCGGCTGCACCGGCCACTTTGAG
CTCAACGTGTTCAAGCCCATGATGATCCACAACGTTCTACACAGCGTGCG
GCTGCTGAGCGATTGTGCCGCGTCGTTCGAACGCAACTGCGTTGAGGGAC
TGCGCGTGGACGAGAAGCGGGTGGCGCAACTGCTCTCCGAGAGCCTGATG
CTGGTGACGGCGCTCAACCCGGTGATCGGGTACGACAAGGCGGCGCAGAT
CGCCAAGAAGGCGCACAAGGAAGGCACTACACTGCGCGACGCCGCCGTGT
CGCTGGGCTTTCTGTCGGCGCAAAAGTTTGACGAGGTTGTGGTGCCCGCC
GACATGCTCGGCCCGAAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1823967..1825487-

>Gvermi12859.t1 ID=Gvermi12859.t1|Name=Gvermi12859.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1521bp|location=Sequence derived from alignment at ScGOVlb_425:1823967..1825487- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCAGCGCCGCCTTCACCCTCGCCGCCATGCCCCTCGCCCGCGCGCC
CCCCACGCTGCTTGCCCGCCTGCTCCGCGCCCCCCGCCTTCCCCGCCCCG
CCCGCCCCTTCCACGCCACCCCCCCCGCCATGGCCTTCCGCACCGAGACC
GACACGTTTGGCGAAGTGCAGGTGCCCGCCGATCGCCTCTGGGGCGCCCA
GACCCAGCGCTCCATCTCCAACTTCGACATCTGCCGCGACACCGACCGCA
TGCCGCTGCCCGTCATTCACGCCTTCGGCGTCCTCAAGCACGCCACCGCC
TCGGCCAACCGCCTCTTCGGCCTGGACCACTCCATCGCCGCCGCCATCGA
GACCGCCGCCGCCGACGTCGCCGCCGGCAAGCTCGACGACCACTTCCCGC
TCGTCGTGTGGCAGACCGGATCGGGCACCCAGTCCAACATGAACGTCAAC
GAGGTCATCTCCAACCGCGCCATCGACATCCTGGGCGGCCAGCGCGGCTC
CAAGAGCCCGGTGCACCCCAACGACCACGTCAACAAGTCGCAGTCGTCCA
ACGACACCTTCCCCACCGCCATGCACATTGCGCTCGCGCGCGAGCTCAAC
GCGCGCCTCATCCCCGCCCTCACCTCGCTGGCCGACGCCTTCGACCGCCA
GGCGCGCCGCCACGCGCACGTCATCAAGATCGGCCGCACGCACTGCATGG
ACGCCGTGCCGCTCACGTACGCGCAGCAGTTCTCGGCGTACGTGCGCCAG
CTGCGCCAGGCCGTGTCGCGCGTGCGCGCGTGCCTGCCGGCCGTGTACGA
GCTCGCCATCGGCGGCACGGCCGTCGGCACGGGGCTCAACACGCACGCGG
GCTTTGCCGACAGCGTGTGCGACAAGGTGGCCGAGCTGACGGGGCTGCCG
TTTGTGCCGGCGCCCAACAAGTTCGAGGCGCTGGCCGCGCACGACGCCGT
CGTGTTCGCCAGCGGCGCGCTCAACACCGCCGCCGCCTCGCTCATGAAGA
TCGCCAACGACATTCGGCTGCTGGGCTCCGGCCCGCGCTGCGGGCTGGGC
GAGCTCGTGCTGCCGGAGAACGAGCCCGGCAGCTCCATCATGCCCGGCAA
GGTGAACCCCACGCAGTGCGAGGCGGTGACGATGGCGTGCGCGCAGGTGA
TGGGCAACCACGTGGCCATCACCGTCGGCGGCTGCACCGGCCACTTTGAG
CTCAACGTGTTCAAGCCCATGATGATCCACAACGTTCTACACAGCGTGCG
GCTGCTGAGCGATTGTGCCGCGTCGTTCGAACGCAACTGCGTTGAGGGAC
TGCGCGTGGACGAGAAGCGGGTGGCGCAACTGCTCTCCGAGAGCCTGATG
CTGGTGACGGCGCTCAACCCGGTGATCGGGTACGACAAGGCGGCGCAGAT
CGCCAAGAAGGCGCACAAGGAAGGCACTACACTGCGCGACGCCGCCGTGT
CGCTGGGCTTTCTGTCGGCGCAAAAGTTTGACGAGGTTGTGGTGCCCGCC
GACATGCTCGGCCCGAAGTAA