Gvermi12858.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12858.t1
Unique NameGvermi12858.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length77
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1823490..1823817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMD068CT
Max annot lvl2759|Eukaryota
Evalue5.07e-19
EggNOG OGs2CGJ1@1|root,2SBJS@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12858Gvermi12858Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1823490..1823817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12858.t1Gvermi12858.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1823490..1823817 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12858.t1.start1Gvermi12858.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1823490..1823492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12858.t1.CDS1Gvermi12858.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1823490..1823648 +
Gvermi12858.t1.CDS2Gvermi12858.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1823746..1823817 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12858.t1.exon1Gvermi12858.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1823490..1823648 +
Gvermi12858.t1.exon2Gvermi12858.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1823746..1823817 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12858.t1.intron1Gvermi12858.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1823649..1823745 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12858.t1.stop1Gvermi12858.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1823815..1823817 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12858.t1 ID=Gvermi12858.t1|Name=Gvermi12858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=77bp
MGEGPRFPYPKEVWSPAGGWWPYPKKWRANTALTLALIVALSIPVAVLSE
NNMVTEGRPSRRIPWRPSLKPADDEH*
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spliced messenger RNA

>Gvermi12858.t1 ID=Gvermi12858.t1|Name=Gvermi12858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=231bp|location=Sequence derived from alignment at ScGOVlb_425:1823490..1823817+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGAAGGCCCGCGCTTCCCGTACCCGAAGGAGGTGTGGTCGCCGGC
CGGCGGCTGGTGGCCGTACCCGAAGAAGTGGCGCGCCAACACCGCCCTCA
CGCTCGCGCTCATCGTCGCGCTCTCCATCCCGGTCGCCGTCCTCTCGGAG
AACAACATGGTCACCGAGGGCCGCCCGAGCCGCCGCATCCCGTGGCGACC
CAGCCTCAAGCCGGCCGATGACGAGCACTAG
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protein sequence of Gvermi12858.t1

>Gvermi12858.t1 ID=Gvermi12858.t1|Name=Gvermi12858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=77bp
MGEGPRFPYPKEVWSPAGGWWPYPKKWRANTALTLALIVALSIPVAVLSE
NNMVTEGRPSRRIPWRPSLKPADDEH*
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mRNA from alignment at ScGOVlb_425:1823490..1823817+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12858.t1 ID=Gvermi12858.t1|Name=Gvermi12858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=328bp|location=Sequence derived from alignment at ScGOVlb_425:1823490..1823817+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGAAGGCCCGCGCTTCCCGTACCCGAAGGAGGTGTGGTCGCCGGC
CGGCGGCTGGTGGCCGTACCCGAAGAAGTGGCGCGCCAACACCGCCCTCA
CGCTCGCGCTCATCGTCGCGCTCTCCATCCCGGTCGCCGTCCTCTCGGAG
AACAACATGGTAAGCAGCCGCGCCGCGCCGCGCCGCCGCGCCCGCCACGC
CATCCGCTAACGCGCGCGCCTGCGTCCCGCCCCGCCCCGCTGCGAGCGCC
GCGCAGGTCACCGAGGGCCGCCCGAGCCGCCGCATCCCGTGGCGACCCAG
CCTCAAGCCGGCCGATGACGAGCACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1823490..1823817+

>Gvermi12858.t1 ID=Gvermi12858.t1|Name=Gvermi12858.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=231bp|location=Sequence derived from alignment at ScGOVlb_425:1823490..1823817+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGAGAAGGCCCGCGCTTCCCGTACCCGAAGGAGGTGTGGTCGCCGGC
CGGCGGCTGGTGGCCGTACCCGAAGAAGTGGCGCGCCAACACCGCCCTCA
CGCTCGCGCTCATCGTCGCGCTCTCCATCCCGGTCGCCGTCCTCTCGGAG
AACAACATGGTCACCGAGGGCCGCCCGAGCCGCCGCATCCCGTGGCGACC
CAGCCTCAAGCCGGCCGATGACGAGCACTAG
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