Gvermi12856.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12856.t1
Unique Name	Gvermi12856.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	773

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1819227..1821545 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMF033CT
PFAMs	DEAD,GUCT,Helicase_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K16911
KEGG Pathway	ko01110,map01110
Evalue	5.8e-141
EggNOG OGs	COG0513@1\|root,KOG0331@2759\|Eukaryota
EC	3.6.4.13
Description	helicase activity
COG category	L
BRITE	ko00000,ko01000,ko03009,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12856	Gvermi12856	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1819227..1821545 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12856.t1.start1	Gvermi12856.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1819227..1819229 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12856.t1.CDS1	Gvermi12856.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1819227..1821545 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12856.t1.exon1	Gvermi12856.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1819227..1821545 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12856.t1.stop1	Gvermi12856.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1821543..1821545 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12856.t1	Gvermi12856.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1819227..1821545 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1819227..1821545+
coding sequence from alignment at ScGOVlb_425:1819227..1821545+

mRNA sequence

>Gvermi12856.t1 ID=Gvermi12856.t1|Name=Gvermi12856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=773bp
MSALRLATLRTMAALRTAFAPALPLRTAPFVAASRRTCPPSIRRTCLVRS
CAVAPTLASQSNGVAQTPDAPEPFAVLDTAAPPSPDAAAAAEATEAAAPP
PPELSAPADYSAPDTVPEPDDRPTMSSFRLSAPTVERLAKNGIIHPTEVQ
AGTFDKLYDGKDLIAKSRTGTGKTLAFALPILERLAVLKQARKYDARHGP
ACIVLAPTRELAKQVAREMSYIGGGLNISVQVVYGGSAYGPQEDALRRGV
DVVVGTPGRIMDHLDRGNLRLSNIAFAVLDEADEMLSMGFAQDVESIFET
LPPKDQRQVILFSATVPPWVKSLASQFQNDDVIVFDAVTSGSMAATTVRH
CAVRVPEREEARASLLADIIAVHSPTKDENLEANGVRTPSRVIVFTQTKR
EADDLATSGALDGCGAAVLHGDVSQKQREVTLSQFRNGRFQVLVATDVAA
RGLDISGVDVVVQYRVPLDSESYIHRAGRTGRAGRSGTAVVMYSDRESRN
LRGLERDCKIKFDMEVAPAPEAALEAAVDVALSNICTVDERVLKHLLPRA
AEIANRGEESTETIAAILAIACRRVRLEDRSVLSGEKGMRTLHVKSDRRQ
ALTPGAALRLIKELSRDAKLDGHVGLIRMCQDGSVVLDVGSEGSDELIST
GEKVMAGTGLSLSLCTGVPVLRETERRRDDRRRDGRFRDDRRGDDRRRDE
RRGYSRGGGRRESMPRGGSRRDSYGSSYSNSGGYRRDGRDRGGYGGRNRP
ERFERRDGARQRRSADFLSDDF*

spliced messenger RNA

>Gvermi12856.t1 ID=Gvermi12856.t1|Name=Gvermi12856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2319bp|location=Sequence derived from alignment at ScGOVlb_425:1819227..1821545+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCCTCCGCCTGGCCACGCTGCGCACCATGGCCGCCCTTCGCAC
CGCCTTCGCGCCGGCGCTCCCGCTGCGGACCGCCCCGTTCGTCGCCGCGT
CGCGCCGCACGTGCCCGCCCTCCATCCGCCGCACATGCCTTGTGCGCTCG
TGCGCGGTGGCGCCCACGCTGGCGTCGCAGTCCAACGGCGTGGCGCAGAC
CCCCGACGCCCCCGAGCCGTTCGCCGTGCTGGACACCGCCGCCCCCCCCT
CACCCGACGCCGCGGCCGCGGCGGAAGCGACGGAGGCGGCGGCGCCGCCG
CCGCCTGAGTTGAGCGCCCCCGCAGACTATTCTGCGCCGGACACCGTGCC
CGAGCCGGACGACAGGCCCACCATGTCGTCATTTCGCCTGTCCGCCCCCA
CCGTGGAGCGCCTGGCGAAGAACGGAATCATTCACCCCACCGAGGTGCAG
GCCGGCACGTTCGACAAGCTGTACGACGGAAAGGACCTGATCGCAAAGTC
GCGCACCGGCACGGGCAAGACGCTCGCGTTCGCGCTGCCCATTCTGGAGC
GCCTGGCCGTCCTCAAGCAGGCCCGCAAGTACGACGCCCGCCACGGCCCC
GCGTGCATCGTGCTGGCGCCCACCAGAGAGCTGGCGAAGCAGGTTGCCCG
CGAGATGTCGTACATTGGCGGCGGCTTGAACATCTCCGTGCAGGTCGTCT
ACGGCGGCTCTGCATACGGTCCGCAGGAGGACGCGCTCAGAAGGGGCGTT
GATGTCGTCGTCGGCACGCCGGGCAGAATCATGGACCATCTGGATCGTGG
CAACTTGCGCCTGTCCAACATTGCCTTTGCCGTCCTGGACGAGGCCGATG
AGATGCTCAGCATGGGCTTTGCGCAAGATGTGGAGTCAATTTTTGAGACC
TTGCCTCCCAAAGACCAGCGTCAGGTCATTTTGTTTTCGGCGACGGTTCC
GCCTTGGGTTAAGAGTCTGGCCTCGCAGTTCCAAAACGATGATGTGATCG
TTTTCGATGCCGTCACTTCTGGTTCTATGGCGGCTACCACTGTTCGCCAC
TGTGCGGTTCGAGTGCCGGAGCGGGAAGAGGCCAGGGCATCGTTATTGGC
CGATATTATTGCTGTACATAGCCCCACAAAGGACGAAAATCTGGAGGCCA
ACGGCGTTCGAACGCCGAGTCGTGTGATTGTGTTCACGCAAACCAAGAGA
GAAGCTGATGATTTAGCTACGTCGGGTGCTCTCGATGGGTGCGGTGCTGC
TGTGCTTCACGGTGATGTATCTCAGAAACAGCGAGAGGTGACTCTTTCTC
AGTTTAGAAATGGACGGTTTCAGGTGCTGGTGGCAACGGATGTTGCAGCA
AGAGGTCTGGACATAAGCGGTGTGGACGTGGTGGTGCAGTATCGCGTTCC
GCTGGATTCAGAATCGTACATTCATCGGGCTGGACGAACAGGGCGTGCTG
GGCGTTCGGGCACAGCCGTGGTGATGTACAGTGATCGCGAGTCGCGTAAC
CTCCGCGGCCTAGAACGTGATTGCAAGATCAAGTTCGACATGGAGGTGGC
GCCGGCACCGGAGGCAGCTTTGGAAGCGGCAGTGGATGTGGCATTGTCCA
ACATTTGCACTGTTGACGAGCGTGTTTTGAAGCATTTGCTACCGCGCGCT
GCAGAGATTGCGAATCGGGGTGAGGAGAGCACGGAAACGATTGCTGCCAT
CTTGGCGATTGCGTGCAGGAGGGTGCGGTTAGAAGACCGCAGTGTGCTGA
GTGGAGAGAAAGGGATGCGCACTCTTCACGTGAAGAGTGATAGGCGACAA
GCGCTGACCCCAGGGGCGGCGCTGCGATTAATTAAGGAACTGTCAAGGGA
CGCCAAGTTGGACGGACACGTTGGACTTATTCGGATGTGCCAGGACGGGT
CTGTGGTTCTGGATGTCGGGAGCGAGGGAAGCGATGAGCTCATCTCAACG
GGAGAAAAGGTTATGGCGGGGACAGGACTGAGTCTTTCACTGTGCACGGG
AGTGCCAGTTCTGCGGGAGACGGAGCGGCGACGTGATGATCGACGCCGGG
ATGGACGATTTCgcgatgaccggcgtggcgacgaccgacgccgagacgag
cggcgaggatactcgaggggcggcgggcgacgGGAGAGCATGCCGCGCGG
CGGAAGTCGACGGGATTCGTACGGCAGTTCGTACAGCAATTCGGGCGGAT
ACCGAAGAGATGGGCGTGACCGCGGAGGATATGGCGGGCGCAACAGACCG
GAACGGTTTGAGCGACGCGACGGAGCGCGCCAGAGGCGTTCGGCTGACTT
CTTGTCTGACGACTTTTGA

protein sequence of Gvermi12856.t1

>Gvermi12856.t1 ID=Gvermi12856.t1|Name=Gvermi12856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=773bp
MSALRLATLRTMAALRTAFAPALPLRTAPFVAASRRTCPPSIRRTCLVRS
CAVAPTLASQSNGVAQTPDAPEPFAVLDTAAPPSPDAAAAAEATEAAAPP
PPELSAPADYSAPDTVPEPDDRPTMSSFRLSAPTVERLAKNGIIHPTEVQ
AGTFDKLYDGKDLIAKSRTGTGKTLAFALPILERLAVLKQARKYDARHGP
ACIVLAPTRELAKQVAREMSYIGGGLNISVQVVYGGSAYGPQEDALRRGV
DVVVGTPGRIMDHLDRGNLRLSNIAFAVLDEADEMLSMGFAQDVESIFET
LPPKDQRQVILFSATVPPWVKSLASQFQNDDVIVFDAVTSGSMAATTVRH
CAVRVPEREEARASLLADIIAVHSPTKDENLEANGVRTPSRVIVFTQTKR
EADDLATSGALDGCGAAVLHGDVSQKQREVTLSQFRNGRFQVLVATDVAA
RGLDISGVDVVVQYRVPLDSESYIHRAGRTGRAGRSGTAVVMYSDRESRN
LRGLERDCKIKFDMEVAPAPEAALEAAVDVALSNICTVDERVLKHLLPRA
AEIANRGEESTETIAAILAIACRRVRLEDRSVLSGEKGMRTLHVKSDRRQ
ALTPGAALRLIKELSRDAKLDGHVGLIRMCQDGSVVLDVGSEGSDELIST
GEKVMAGTGLSLSLCTGVPVLRETERRRDDRRRDGRFRDDRRGDDRRRDE
RRGYSRGGGRRESMPRGGSRRDSYGSSYSNSGGYRRDGRDRGGYGGRNRP
ERFERRDGARQRRSADFLSDDF*

mRNA from alignment at ScGOVlb_425:1819227..1821545+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12856.t1 ID=Gvermi12856.t1|Name=Gvermi12856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2319bp|location=Sequence derived from alignment at ScGOVlb_425:1819227..1821545+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCCCTCCGCCTGGCCACGCTGCGCACCATGGCCGCCCTTCGCAC
CGCCTTCGCGCCGGCGCTCCCGCTGCGGACCGCCCCGTTCGTCGCCGCGT
CGCGCCGCACGTGCCCGCCCTCCATCCGCCGCACATGCCTTGTGCGCTCG
TGCGCGGTGGCGCCCACGCTGGCGTCGCAGTCCAACGGCGTGGCGCAGAC
CCCCGACGCCCCCGAGCCGTTCGCCGTGCTGGACACCGCCGCCCCCCCCT
CACCCGACGCCGCGGCCGCGGCGGAAGCGACGGAGGCGGCGGCGCCGCCG
CCGCCTGAGTTGAGCGCCCCCGCAGACTATTCTGCGCCGGACACCGTGCC
CGAGCCGGACGACAGGCCCACCATGTCGTCATTTCGCCTGTCCGCCCCCA
CCGTGGAGCGCCTGGCGAAGAACGGAATCATTCACCCCACCGAGGTGCAG
GCCGGCACGTTCGACAAGCTGTACGACGGAAAGGACCTGATCGCAAAGTC
GCGCACCGGCACGGGCAAGACGCTCGCGTTCGCGCTGCCCATTCTGGAGC
GCCTGGCCGTCCTCAAGCAGGCCCGCAAGTACGACGCCCGCCACGGCCCC
GCGTGCATCGTGCTGGCGCCCACCAGAGAGCTGGCGAAGCAGGTTGCCCG
CGAGATGTCGTACATTGGCGGCGGCTTGAACATCTCCGTGCAGGTCGTCT
ACGGCGGCTCTGCATACGGTCCGCAGGAGGACGCGCTCAGAAGGGGCGTT
GATGTCGTCGTCGGCACGCCGGGCAGAATCATGGACCATCTGGATCGTGG
CAACTTGCGCCTGTCCAACATTGCCTTTGCCGTCCTGGACGAGGCCGATG
AGATGCTCAGCATGGGCTTTGCGCAAGATGTGGAGTCAATTTTTGAGACC
TTGCCTCCCAAAGACCAGCGTCAGGTCATTTTGTTTTCGGCGACGGTTCC
GCCTTGGGTTAAGAGTCTGGCCTCGCAGTTCCAAAACGATGATGTGATCG
TTTTCGATGCCGTCACTTCTGGTTCTATGGCGGCTACCACTGTTCGCCAC
TGTGCGGTTCGAGTGCCGGAGCGGGAAGAGGCCAGGGCATCGTTATTGGC
CGATATTATTGCTGTACATAGCCCCACAAAGGACGAAAATCTGGAGGCCA
ACGGCGTTCGAACGCCGAGTCGTGTGATTGTGTTCACGCAAACCAAGAGA
GAAGCTGATGATTTAGCTACGTCGGGTGCTCTCGATGGGTGCGGTGCTGC
TGTGCTTCACGGTGATGTATCTCAGAAACAGCGAGAGGTGACTCTTTCTC
AGTTTAGAAATGGACGGTTTCAGGTGCTGGTGGCAACGGATGTTGCAGCA
AGAGGTCTGGACATAAGCGGTGTGGACGTGGTGGTGCAGTATCGCGTTCC
GCTGGATTCAGAATCGTACATTCATCGGGCTGGACGAACAGGGCGTGCTG
GGCGTTCGGGCACAGCCGTGGTGATGTACAGTGATCGCGAGTCGCGTAAC
CTCCGCGGCCTAGAACGTGATTGCAAGATCAAGTTCGACATGGAGGTGGC
GCCGGCACCGGAGGCAGCTTTGGAAGCGGCAGTGGATGTGGCATTGTCCA
ACATTTGCACTGTTGACGAGCGTGTTTTGAAGCATTTGCTACCGCGCGCT
GCAGAGATTGCGAATCGGGGTGAGGAGAGCACGGAAACGATTGCTGCCAT
CTTGGCGATTGCGTGCAGGAGGGTGCGGTTAGAAGACCGCAGTGTGCTGA
GTGGAGAGAAAGGGATGCGCACTCTTCACGTGAAGAGTGATAGGCGACAA
GCGCTGACCCCAGGGGCGGCGCTGCGATTAATTAAGGAACTGTCAAGGGA
CGCCAAGTTGGACGGACACGTTGGACTTATTCGGATGTGCCAGGACGGGT
CTGTGGTTCTGGATGTCGGGAGCGAGGGAAGCGATGAGCTCATCTCAACG
GGAGAAAAGGTTATGGCGGGGACAGGACTGAGTCTTTCACTGTGCACGGG
AGTGCCAGTTCTGCGGGAGACGGAGCGGCGACGTGATGATCGACGCCGGG
ATGGACGATTTCgcgatgaccggcgtggcgacgaccgacgccgagacgag
cggcgaggatactcgaggggcggcgggcgacgGGAGAGCATGCCGCGCGG
CGGAAGTCGACGGGATTCGTACGGCAGTTCGTACAGCAATTCGGGCGGAT
ACCGAAGAGATGGGCGTGACCGCGGAGGATATGGCGGGCGCAACAGACCG
GAACGGTTTGAGCGACGCGACGGAGCGCGCCAGAGGCGTTCGGCTGACTT
CTTGTCTGACGACTTTTGA

Coding sequence (CDS) from alignment at ScGOVlb_425:1819227..1821545+

>Gvermi12856.t1 ID=Gvermi12856.t1|Name=Gvermi12856.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2319bp|location=Sequence derived from alignment at ScGOVlb_425:1819227..1821545+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCCCTCCGCCTGGCCACGCTGCGCACCATGGCCGCCCTTCGCAC
CGCCTTCGCGCCGGCGCTCCCGCTGCGGACCGCCCCGTTCGTCGCCGCGT
CGCGCCGCACGTGCCCGCCCTCCATCCGCCGCACATGCCTTGTGCGCTCG
TGCGCGGTGGCGCCCACGCTGGCGTCGCAGTCCAACGGCGTGGCGCAGAC
CCCCGACGCCCCCGAGCCGTTCGCCGTGCTGGACACCGCCGCCCCCCCCT
CACCCGACGCCGCGGCCGCGGCGGAAGCGACGGAGGCGGCGGCGCCGCCG
CCGCCTGAGTTGAGCGCCCCCGCAGACTATTCTGCGCCGGACACCGTGCC
CGAGCCGGACGACAGGCCCACCATGTCGTCATTTCGCCTGTCCGCCCCCA
CCGTGGAGCGCCTGGCGAAGAACGGAATCATTCACCCCACCGAGGTGCAG
GCCGGCACGTTCGACAAGCTGTACGACGGAAAGGACCTGATCGCAAAGTC
GCGCACCGGCACGGGCAAGACGCTCGCGTTCGCGCTGCCCATTCTGGAGC
GCCTGGCCGTCCTCAAGCAGGCCCGCAAGTACGACGCCCGCCACGGCCCC
GCGTGCATCGTGCTGGCGCCCACCAGAGAGCTGGCGAAGCAGGTTGCCCG
CGAGATGTCGTACATTGGCGGCGGCTTGAACATCTCCGTGCAGGTCGTCT
ACGGCGGCTCTGCATACGGTCCGCAGGAGGACGCGCTCAGAAGGGGCGTT
GATGTCGTCGTCGGCACGCCGGGCAGAATCATGGACCATCTGGATCGTGG
CAACTTGCGCCTGTCCAACATTGCCTTTGCCGTCCTGGACGAGGCCGATG
AGATGCTCAGCATGGGCTTTGCGCAAGATGTGGAGTCAATTTTTGAGACC
TTGCCTCCCAAAGACCAGCGTCAGGTCATTTTGTTTTCGGCGACGGTTCC
GCCTTGGGTTAAGAGTCTGGCCTCGCAGTTCCAAAACGATGATGTGATCG
TTTTCGATGCCGTCACTTCTGGTTCTATGGCGGCTACCACTGTTCGCCAC
TGTGCGGTTCGAGTGCCGGAGCGGGAAGAGGCCAGGGCATCGTTATTGGC
CGATATTATTGCTGTACATAGCCCCACAAAGGACGAAAATCTGGAGGCCA
ACGGCGTTCGAACGCCGAGTCGTGTGATTGTGTTCACGCAAACCAAGAGA
GAAGCTGATGATTTAGCTACGTCGGGTGCTCTCGATGGGTGCGGTGCTGC
TGTGCTTCACGGTGATGTATCTCAGAAACAGCGAGAGGTGACTCTTTCTC
AGTTTAGAAATGGACGGTTTCAGGTGCTGGTGGCAACGGATGTTGCAGCA
AGAGGTCTGGACATAAGCGGTGTGGACGTGGTGGTGCAGTATCGCGTTCC
GCTGGATTCAGAATCGTACATTCATCGGGCTGGACGAACAGGGCGTGCTG
GGCGTTCGGGCACAGCCGTGGTGATGTACAGTGATCGCGAGTCGCGTAAC
CTCCGCGGCCTAGAACGTGATTGCAAGATCAAGTTCGACATGGAGGTGGC
GCCGGCACCGGAGGCAGCTTTGGAAGCGGCAGTGGATGTGGCATTGTCCA
ACATTTGCACTGTTGACGAGCGTGTTTTGAAGCATTTGCTACCGCGCGCT
GCAGAGATTGCGAATCGGGGTGAGGAGAGCACGGAAACGATTGCTGCCAT
CTTGGCGATTGCGTGCAGGAGGGTGCGGTTAGAAGACCGCAGTGTGCTGA
GTGGAGAGAAAGGGATGCGCACTCTTCACGTGAAGAGTGATAGGCGACAA
GCGCTGACCCCAGGGGCGGCGCTGCGATTAATTAAGGAACTGTCAAGGGA
CGCCAAGTTGGACGGACACGTTGGACTTATTCGGATGTGCCAGGACGGGT
CTGTGGTTCTGGATGTCGGGAGCGAGGGAAGCGATGAGCTCATCTCAACG
GGAGAAAAGGTTATGGCGGGGACAGGACTGAGTCTTTCACTGTGCACGGG
AGTGCCAGTTCTGCGGGAGACGGAGCGGCGACGTGATGATCGACGCCGGG
ATGGACGATTTCgcgatgaccggcgtggcgacgaccgacgccgagacgag
cggcgaggatactcgaggggcggcgggcgacgGGAGAGCATGCCGCGCGG
CGGAAGTCGACGGGATTCGTACGGCAGTTCGTACAGCAATTCGGGCGGAT
ACCGAAGAGATGGGCGTGACCGCGGAGGATATGGCGGGCGCAACAGACCG
GAACGGTTTGAGCGACGCGACGGAGCGCGCCAGAGGCGTTCGGCTGACTT
CTTGTCTGACGACTTTTGA