Gvermi12854.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12854.t1
Unique NameGvermi12854.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1812713..1813639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708256.1
Preferred nameSCS-alpha
PFAMsCoA_binding,Ligase_CoA
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00014
KEGG koko:K01899
KEGG ReactionR00432,R00727
KEGG Pathwayko00020,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011
GOsGO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0004776,GO:0005488,GO:0005507,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006104,GO:0006105,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0010035,GO:0010038,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0031974,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:1901135,GO:1901360,GO:1901564
Evalue1.66e-147
EggNOG OGsCOG0074@1|root,KOG1255@2759|Eukaryota
EC6.2.1.4,6.2.1.5
Descriptionsuccinate-CoA ligase (GDP-forming) activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12854Gvermi12854Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1812713..1813639 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12854.t1.start1Gvermi12854.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1812713..1812715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12854.t1.CDS1Gvermi12854.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1812713..1813639 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12854.t1.exon1Gvermi12854.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1812713..1813639 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12854.t1.stop1Gvermi12854.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1813637..1813639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12854.t1Gvermi12854.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1812713..1813639 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12854.t1 ID=Gvermi12854.t1|Name=Gvermi12854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=309bp
MAAPAFRTFSTRPAPYVSAATRVLYQGFTGKQGTFHAEQAIAYGTNIVGG
TNPKRAGQRHLDRPVFATVAEARTETGADASAIFVPPAGAAAAIEEAIVA
EMPLVVCITEGIPQRDMVRVKSLLRDATATRLIGPNCPGIIKPDQCKIGI
MPGHIHKPGSIGVVSRSGTLTYEAVNQTTEVGLGQSICIGIGGDPFNGTD
FIDCLDMFLNDPETKGIVMIGEIGGQAEEQAAEFLRQHPVKKPVVAFIAG
VTAPPGRRMGHAGAIISGGKGTAADKIAAMEAAGARVVRSPAALGTSMLE
EMQNAGLA*
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spliced messenger RNA

>Gvermi12854.t1 ID=Gvermi12854.t1|Name=Gvermi12854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=927bp|location=Sequence derived from alignment at ScGOVlb_425:1812713..1813639+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCGCCCGCTTTCAGGACCTTTTCAACCAGACCAGCCCCCTACGT
CTCCGCCGCCACCCGCGTTCTTTACCAGGGCTTCACCGGCAAGCAGGGCA
CCTTCCACGCCGAGCAGGCAATCGCCTACGGCACCAACATCGTCGGCGGC
ACCAATCCCAAACGCGCTGGCCAGCGCCACTTAGACCGCCCCGTGTTTGC
CACCGTCGCCGAAGCCCGAACTGAGAccggcgccgatgcctcggccatct
tcgtcccgccggccggcgccgccgctgccATCGAGGAGGCTATTGTCGCC
GAGATGCCCCTGGTCGTCTGCATCACCGAGGGCATCCCACAGCGCGACAT
GGTTCGTGTCAAGAGCCTTTTGAGAGATGCCACCGCCACCCGCCTCATTG
GCCCCAACTGCCCGGGCATCATCAAGCCCGACCAGTGCAAGATCGGCATC
ATGCCCGGTCACATCCATAAGCCGGGTTCCATCGGCGTCGTGTCCCGATC
GGGGACCCTCACCTACGAGGCTGTCAACCAGACCACCGAAGTCGGCCTCG
GCCAGAGCATATGCATCGGCATAGGCGGCGATCCCTTCAACGGCACCGAC
TTTATCGACTGCCTCGACATGTTCCTCAACGACCCGGAGACAAAGGGAAT
CGTCATGATCGGCGAAATCGGCGGCCAGGCCGAGGAGCAGGCTGCCGAAT
TTCTCCGCCAGCACCCGGTCAAGAAGCCTGTTGTCGCCTTTATTGCCGGC
GTCACCGCCCCGCCGGGCAGGCGCATGGGGCACGCCGGCGCCATCATTTC
CGGCGGCAAGGGCACCGCCGCCGACAAGATTGCCGCCATGGAAGCTGCCG
GTGCCCGCGTTGTCCGGAGCCCTGCTGCGCTGGGAACCTCCATGCTGGAG
GAGATGCAGAACGCCGGTTTGGCTTGA
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protein sequence of Gvermi12854.t1

>Gvermi12854.t1 ID=Gvermi12854.t1|Name=Gvermi12854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=309bp
MAAPAFRTFSTRPAPYVSAATRVLYQGFTGKQGTFHAEQAIAYGTNIVGG
TNPKRAGQRHLDRPVFATVAEARTETGADASAIFVPPAGAAAAIEEAIVA
EMPLVVCITEGIPQRDMVRVKSLLRDATATRLIGPNCPGIIKPDQCKIGI
MPGHIHKPGSIGVVSRSGTLTYEAVNQTTEVGLGQSICIGIGGDPFNGTD
FIDCLDMFLNDPETKGIVMIGEIGGQAEEQAAEFLRQHPVKKPVVAFIAG
VTAPPGRRMGHAGAIISGGKGTAADKIAAMEAAGARVVRSPAALGTSMLE
EMQNAGLA*
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mRNA from alignment at ScGOVlb_425:1812713..1813639+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12854.t1 ID=Gvermi12854.t1|Name=Gvermi12854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=927bp|location=Sequence derived from alignment at ScGOVlb_425:1812713..1813639+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCGCCCGCTTTCAGGACCTTTTCAACCAGACCAGCCCCCTACGT
CTCCGCCGCCACCCGCGTTCTTTACCAGGGCTTCACCGGCAAGCAGGGCA
CCTTCCACGCCGAGCAGGCAATCGCCTACGGCACCAACATCGTCGGCGGC
ACCAATCCCAAACGCGCTGGCCAGCGCCACTTAGACCGCCCCGTGTTTGC
CACCGTCGCCGAAGCCCGAACTGAGAccggcgccgatgcctcggccatct
tcgtcccgccggccggcgccgccgctgccATCGAGGAGGCTATTGTCGCC
GAGATGCCCCTGGTCGTCTGCATCACCGAGGGCATCCCACAGCGCGACAT
GGTTCGTGTCAAGAGCCTTTTGAGAGATGCCACCGCCACCCGCCTCATTG
GCCCCAACTGCCCGGGCATCATCAAGCCCGACCAGTGCAAGATCGGCATC
ATGCCCGGTCACATCCATAAGCCGGGTTCCATCGGCGTCGTGTCCCGATC
GGGGACCCTCACCTACGAGGCTGTCAACCAGACCACCGAAGTCGGCCTCG
GCCAGAGCATATGCATCGGCATAGGCGGCGATCCCTTCAACGGCACCGAC
TTTATCGACTGCCTCGACATGTTCCTCAACGACCCGGAGACAAAGGGAAT
CGTCATGATCGGCGAAATCGGCGGCCAGGCCGAGGAGCAGGCTGCCGAAT
TTCTCCGCCAGCACCCGGTCAAGAAGCCTGTTGTCGCCTTTATTGCCGGC
GTCACCGCCCCGCCGGGCAGGCGCATGGGGCACGCCGGCGCCATCATTTC
CGGCGGCAAGGGCACCGCCGCCGACAAGATTGCCGCCATGGAAGCTGCCG
GTGCCCGCGTTGTCCGGAGCCCTGCTGCGCTGGGAACCTCCATGCTGGAG
GAGATGCAGAACGCCGGTTTGGCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1812713..1813639+

>Gvermi12854.t1 ID=Gvermi12854.t1|Name=Gvermi12854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=927bp|location=Sequence derived from alignment at ScGOVlb_425:1812713..1813639+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGCGCCCGCTTTCAGGACCTTTTCAACCAGACCAGCCCCCTACGT
CTCCGCCGCCACCCGCGTTCTTTACCAGGGCTTCACCGGCAAGCAGGGCA
CCTTCCACGCCGAGCAGGCAATCGCCTACGGCACCAACATCGTCGGCGGC
ACCAATCCCAAACGCGCTGGCCAGCGCCACTTAGACCGCCCCGTGTTTGC
CACCGTCGCCGAAGCCCGAACTGAGAccggcgccgatgcctcggccatct
tcgtcccgccggccggcgccgccgctgccATCGAGGAGGCTATTGTCGCC
GAGATGCCCCTGGTCGTCTGCATCACCGAGGGCATCCCACAGCGCGACAT
GGTTCGTGTCAAGAGCCTTTTGAGAGATGCCACCGCCACCCGCCTCATTG
GCCCCAACTGCCCGGGCATCATCAAGCCCGACCAGTGCAAGATCGGCATC
ATGCCCGGTCACATCCATAAGCCGGGTTCCATCGGCGTCGTGTCCCGATC
GGGGACCCTCACCTACGAGGCTGTCAACCAGACCACCGAAGTCGGCCTCG
GCCAGAGCATATGCATCGGCATAGGCGGCGATCCCTTCAACGGCACCGAC
TTTATCGACTGCCTCGACATGTTCCTCAACGACCCGGAGACAAAGGGAAT
CGTCATGATCGGCGAAATCGGCGGCCAGGCCGAGGAGCAGGCTGCCGAAT
TTCTCCGCCAGCACCCGGTCAAGAAGCCTGTTGTCGCCTTTATTGCCGGC
GTCACCGCCCCGCCGGGCAGGCGCATGGGGCACGCCGGCGCCATCATTTC
CGGCGGCAAGGGCACCGCCGCCGACAAGATTGCCGCCATGGAAGCTGCCG
GTGCCCGCGTTGTCCGGAGCCCTGCTGCGCTGGGAACCTCCATGCTGGAG
GAGATGCAGAACGCCGGTTTGGCTTGA
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