Gvermi12851.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12851.t1
Unique Name	Gvermi12851.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	254

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1801149..1801910 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704885.1
PFAMs	DRMBL,Lactamase_B_2,SAM_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15340
GOs	GO:0000228,GO:0000715,GO:0000723,GO:0000726,GO:0000781,GO:0000784,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008409,GO:0009987,GO:0016043,GO:0016233,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0031848,GO:0031974,GO:0031981,GO:0032200,GO:0033554,GO:0034641,GO:0035312,GO:0036297,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0097159,GO:0098687,GO:0140097,GO:1901360,GO:1901363
Evalue	1.92e-39
EggNOG OGs	COG1236@1\|root,KOG1361@2759\|Eukaryota
Description	protection from non-homologous end joining at telomere
COG category	J
BRITE	ko00000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12851	Gvermi12851	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1801149..1801910 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12851.t1.start1	Gvermi12851.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1801149..1801151 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12851.t1.CDS1	Gvermi12851.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1801149..1801910 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12851.t1.exon1	Gvermi12851.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1801149..1801910 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12851.t1.stop1	Gvermi12851.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1801908..1801910 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12851.t1	Gvermi12851.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1801149..1801910 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1801149..1801910+
coding sequence from alignment at ScGOVlb_425:1801149..1801910+

mRNA sequence

>Gvermi12851.t1 ID=Gvermi12851.t1|Name=Gvermi12851.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=254bp
LHTKRWVLHTGDFRYHAPHFDRFHTLVQLVQAASLHDLHLDTTYCSPQYA
FPPQHRVLHTALHHAAQEDRRTKRACLFFFATYSIGKEKLFLHVATHLNL
RIYASKRKREMLALLHMPHMAARLVDDPTRARVHLVSMRELTPPSLRNYV
RHNALSDKFIGRGLAVCFRPTGWTFNGAAVRRHVRPADNAVVFQLPYSEH
CSFAELRRFVEWTKPCRLIPMVGAHTPEKRQHMKQLLGHSDRPLCQPTFI
PPP*

spliced messenger RNA

>Gvermi12851.t1 ID=Gvermi12851.t1|Name=Gvermi12851.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=762bp|location=Sequence derived from alignment at ScGOVlb_425:1801149..1801910+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCACACCAAGCGCTGGGTGCTGCACACGGGCGACTTCCGCTACCACGC
CCCCCACTTTGACCGCTTCCACACGCTGGTGCAGCTGGTGCAGGCAGCCT
CGCTGCACGATCTGCACCTGGACACCACGTACTGCTCACCGCAGTACGCC
TTCCCGCCGCAGCACCGCGTCCTGCACACCGCCTTGCACCACGCCGCGCA
GGAGGACCGCCGCACCAAGCGCGCCTGCCTCTTCTTCTTCGCCACCTACT
CCATCGGCAAGGAGAAGCTCTTCCTGCACGTGGCCACCCACCTGAACCTC
CGCATCTACGCCTCCAAGCGCAAGCGCGAAATGCTCGCCCTGCTCCACAT
GCCGCACATGGCCGCCCGCCTCGTCGACGACCCCACGCGCGCCCGCGTCC
ACCTTGTCTCTATGCGCGAGCTCACCCCGCCGTCGCTGCGCAACTACGTC
CGCCACAACGCGCTGTCCGACAAGTTCATCGGCCGCGGGCTGGCCGTGTG
CTTCCGCCCCACCGGCTGGACGTTCAACGGCGCCGCCGTGCGCCGCCACG
TGCGCCCCGCCGACAACGCCGTCGTGTTTCAGCTCCCGTACTCCGAGCAC
TGCAGCTTTGCCGAGCTGCGCCGCTTCGTCGAGTGGACAAAGCCCTGCCG
ACTCATCCCCATGGTCGGCGCGCACACGCCCGAGAAGCGCCAGCACATGA
AGCAGCTGCTGGGACACAGCGACCGCCCGCTCTGCCAGCCTACGTTTATT
CCCCCGCCGTGA

protein sequence of Gvermi12851.t1

>Gvermi12851.t1 ID=Gvermi12851.t1|Name=Gvermi12851.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=254bp
LHTKRWVLHTGDFRYHAPHFDRFHTLVQLVQAASLHDLHLDTTYCSPQYA
FPPQHRVLHTALHHAAQEDRRTKRACLFFFATYSIGKEKLFLHVATHLNL
RIYASKRKREMLALLHMPHMAARLVDDPTRARVHLVSMRELTPPSLRNYV
RHNALSDKFIGRGLAVCFRPTGWTFNGAAVRRHVRPADNAVVFQLPYSEH
CSFAELRRFVEWTKPCRLIPMVGAHTPEKRQHMKQLLGHSDRPLCQPTFI
PPP*

mRNA from alignment at ScGOVlb_425:1801149..1801910+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12851.t1 ID=Gvermi12851.t1|Name=Gvermi12851.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=762bp|location=Sequence derived from alignment at ScGOVlb_425:1801149..1801910+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCACACCAAGCGCTGGGTGCTGCACACGGGCGACTTCCGCTACCACGC
CCCCCACTTTGACCGCTTCCACACGCTGGTGCAGCTGGTGCAGGCAGCCT
CGCTGCACGATCTGCACCTGGACACCACGTACTGCTCACCGCAGTACGCC
TTCCCGCCGCAGCACCGCGTCCTGCACACCGCCTTGCACCACGCCGCGCA
GGAGGACCGCCGCACCAAGCGCGCCTGCCTCTTCTTCTTCGCCACCTACT
CCATCGGCAAGGAGAAGCTCTTCCTGCACGTGGCCACCCACCTGAACCTC
CGCATCTACGCCTCCAAGCGCAAGCGCGAAATGCTCGCCCTGCTCCACAT
GCCGCACATGGCCGCCCGCCTCGTCGACGACCCCACGCGCGCCCGCGTCC
ACCTTGTCTCTATGCGCGAGCTCACCCCGCCGTCGCTGCGCAACTACGTC
CGCCACAACGCGCTGTCCGACAAGTTCATCGGCCGCGGGCTGGCCGTGTG
CTTCCGCCCCACCGGCTGGACGTTCAACGGCGCCGCCGTGCGCCGCCACG
TGCGCCCCGCCGACAACGCCGTCGTGTTTCAGCTCCCGTACTCCGAGCAC
TGCAGCTTTGCCGAGCTGCGCCGCTTCGTCGAGTGGACAAAGCCCTGCCG
ACTCATCCCCATGGTCGGCGCGCACACGCCCGAGAAGCGCCAGCACATGA
AGCAGCTGCTGGGACACAGCGACCGCCCGCTCTGCCAGCCTACGTTTATT
CCCCCGCCGTGA

Coding sequence (CDS) from alignment at ScGOVlb_425:1801149..1801910+

>Gvermi12851.t1 ID=Gvermi12851.t1|Name=Gvermi12851.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=762bp|location=Sequence derived from alignment at ScGOVlb_425:1801149..1801910+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCACACCAAGCGCTGGGTGCTGCACACGGGCGACTTCCGCTACCACGC
CCCCCACTTTGACCGCTTCCACACGCTGGTGCAGCTGGTGCAGGCAGCCT
CGCTGCACGATCTGCACCTGGACACCACGTACTGCTCACCGCAGTACGCC
TTCCCGCCGCAGCACCGCGTCCTGCACACCGCCTTGCACCACGCCGCGCA
GGAGGACCGCCGCACCAAGCGCGCCTGCCTCTTCTTCTTCGCCACCTACT
CCATCGGCAAGGAGAAGCTCTTCCTGCACGTGGCCACCCACCTGAACCTC
CGCATCTACGCCTCCAAGCGCAAGCGCGAAATGCTCGCCCTGCTCCACAT
GCCGCACATGGCCGCCCGCCTCGTCGACGACCCCACGCGCGCCCGCGTCC
ACCTTGTCTCTATGCGCGAGCTCACCCCGCCGTCGCTGCGCAACTACGTC
CGCCACAACGCGCTGTCCGACAAGTTCATCGGCCGCGGGCTGGCCGTGTG
CTTCCGCCCCACCGGCTGGACGTTCAACGGCGCCGCCGTGCGCCGCCACG
TGCGCCCCGCCGACAACGCCGTCGTGTTTCAGCTCCCGTACTCCGAGCAC
TGCAGCTTTGCCGAGCTGCGCCGCTTCGTCGAGTGGACAAAGCCCTGCCG
ACTCATCCCCATGGTCGGCGCGCACACGCCCGAGAAGCGCCAGCACATGA
AGCAGCTGCTGGGACACAGCGACCGCCCGCTCTGCCAGCCTACGTTTATT
CCCCCGCCGTGA