Gvermi12850.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12850.t1
Unique NameGvermi12850.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1797429..1798388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009039927.1
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Evalue7.9e-38
EggNOG OGsKOG0758@1|root,KOG0758@2759|Eukaryota
Descriptionmitochondrial transport
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12850Gvermi12850Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1797429..1798388 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12850.t1.stop1Gvermi12850.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1797429..1797431 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12850.t1.CDS1Gvermi12850.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1797429..1798388 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12850.t1.exon1Gvermi12850.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1797429..1798388 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12850.t1.start1Gvermi12850.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1798386..1798388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12850.t1Gvermi12850.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1797429..1798388 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12850.t1 ID=Gvermi12850.t1|Name=Gvermi12850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=320bp
LVDHALQARIITAIRAASPRPLAVGLEMVQAKFQPALDAFVAGRLSELDL
YLRTEWDTRWVWPYELYLPVLRACRRLAVPLVALAIDSEKLAALRARPAP
PAARSALDLAAPLPQPQPQPHPDPDPDPAVFAAIMREPGFKRYVNECITP
SYAAHYKLGLLSEATDFSTYFASRMFRDHAMATNAVRHVLSAAPGTTLVC
LLGADHVKFEYGVAGRVRRLLAAHRARAPPAAADAADAAGVRAETRASPP
DPLLKTVMLNPAPPDAYDAADGSLKLEMPVGDVQLPIADYLWFSSAADAN
PRKQIKRRVLPPIERLTSS*
back to top

spliced messenger RNA

>Gvermi12850.t1 ID=Gvermi12850.t1|Name=Gvermi12850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=960bp|location=Sequence derived from alignment at ScGOVlb_425:1797429..1798388- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGTCGACCACGCCCTGCAGGCCCGCATCATCACCGCCATCCGCGCCGC
CTCCCCGCGCCCGCTCGCCGTCGGGCTCGAGATGGTCCAGGCCAAGTTCC
AGCCCGCGCTGGACGCCTTTGTGGCCGGCCGCCTGTCCGAGCTCGACCTC
TACCTGCGCACCGAGTGGGACACACGCTGGGTCTGGCCCTACGAGCTCTA
CCTCCCCGTGCTGCGTGCGTGCCGCCGCCTCGCCGTCCCACTCGTCGCCC
TGGCCATCGACTCGGAGAAGCTGGCCGCCCTGCGCGCGCGTCCCGCCCCG
CCCGCCGCGCGCTCCGCACTCGACCTCGCCGCCCCGCTGCCGCAGCCGCA
GCCGCAGCCGCACCCGGACCCGGACCCGGACCCAGCCGTCTTCGCCGCAA
TCATGCGCGAGCCGGGCTTCAAGCGCTACGTCAACGAGTGCATCACCCCG
AGCTACGCTGCGCATTACAAGCTCGGCCTGCTGTCGGAGGCCACCGACTT
CAGCACCTACTTCGCCAGCAGGATGTTCCGCGACCACGCCATGGCCACCA
ACGCCGTGCGCCACGTGCTGTCCGCCGCGCCCGGCACCACGCTCGTCTGC
CTGCTCGGCGCCGACCACGTCAAGTTCGAGTACGGCGTCGCCGGCAGGGT
GCGCCGCCTGCTCGCCGCCCACCGCGCGCGCGCGCCGCCCGCCGCCGCCG
ACGCCGCCGACGCCGCCGGCGTGCGCGCGGAGACGCGCGCGTCGCCGCCC
GACCCGCTCCTCAAGACCGTCATGCTCAACCCCGCCCCGCCGGACGCTTA
CGACGCCGCCGACGGCAGCCTCAAGCTCGAAATGCCTGTCGGCGACGTGC
AGCTGCCCATTGCCGACTATCTCTGGTTCAGCTCCGCCGCCGACGCCAAC
CCCAGGAAGCAGATTAAGCGCCGGGTGCTTCCGCCGATTGAGCGTTTAAC
CAGCTCGTGA
back to top

protein sequence of Gvermi12850.t1

>Gvermi12850.t1 ID=Gvermi12850.t1|Name=Gvermi12850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=320bp
LVDHALQARIITAIRAASPRPLAVGLEMVQAKFQPALDAFVAGRLSELDL
YLRTEWDTRWVWPYELYLPVLRACRRLAVPLVALAIDSEKLAALRARPAP
PAARSALDLAAPLPQPQPQPHPDPDPDPAVFAAIMREPGFKRYVNECITP
SYAAHYKLGLLSEATDFSTYFASRMFRDHAMATNAVRHVLSAAPGTTLVC
LLGADHVKFEYGVAGRVRRLLAAHRARAPPAAADAADAAGVRAETRASPP
DPLLKTVMLNPAPPDAYDAADGSLKLEMPVGDVQLPIADYLWFSSAADAN
PRKQIKRRVLPPIERLTSS*
back to top

mRNA from alignment at ScGOVlb_425:1797429..1798388-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12850.t1 ID=Gvermi12850.t1|Name=Gvermi12850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=960bp|location=Sequence derived from alignment at ScGOVlb_425:1797429..1798388- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGTCGACCACGCCCTGCAGGCCCGCATCATCACCGCCATCCGCGCCGC
CTCCCCGCGCCCGCTCGCCGTCGGGCTCGAGATGGTCCAGGCCAAGTTCC
AGCCCGCGCTGGACGCCTTTGTGGCCGGCCGCCTGTCCGAGCTCGACCTC
TACCTGCGCACCGAGTGGGACACACGCTGGGTCTGGCCCTACGAGCTCTA
CCTCCCCGTGCTGCGTGCGTGCCGCCGCCTCGCCGTCCCACTCGTCGCCC
TGGCCATCGACTCGGAGAAGCTGGCCGCCCTGCGCGCGCGTCCCGCCCCG
CCCGCCGCGCGCTCCGCACTCGACCTCGCCGCCCCGCTGCCGCAGCCGCA
GCCGCAGCCGCACCCGGACCCGGACCCGGACCCAGCCGTCTTCGCCGCAA
TCATGCGCGAGCCGGGCTTCAAGCGCTACGTCAACGAGTGCATCACCCCG
AGCTACGCTGCGCATTACAAGCTCGGCCTGCTGTCGGAGGCCACCGACTT
CAGCACCTACTTCGCCAGCAGGATGTTCCGCGACCACGCCATGGCCACCA
ACGCCGTGCGCCACGTGCTGTCCGCCGCGCCCGGCACCACGCTCGTCTGC
CTGCTCGGCGCCGACCACGTCAAGTTCGAGTACGGCGTCGCCGGCAGGGT
GCGCCGCCTGCTCGCCGCCCACCGCGCGCGCGCGCCGCCCGCCGCCGCCG
ACGCCGCCGACGCCGCCGGCGTGCGCGCGGAGACGCGCGCGTCGCCGCCC
GACCCGCTCCTCAAGACCGTCATGCTCAACCCCGCCCCGCCGGACGCTTA
CGACGCCGCCGACGGCAGCCTCAAGCTCGAAATGCCTGTCGGCGACGTGC
AGCTGCCCATTGCCGACTATCTCTGGTTCAGCTCCGCCGCCGACGCCAAC
CCCAGGAAGCAGATTAAGCGCCGGGTGCTTCCGCCGATTGAGCGTTTAAC
CAGCTCGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1797429..1798388-

>Gvermi12850.t1 ID=Gvermi12850.t1|Name=Gvermi12850.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=960bp|location=Sequence derived from alignment at ScGOVlb_425:1797429..1798388- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGTCGACCACGCCCTGCAGGCCCGCATCATCACCGCCATCCGCGCCGC
CTCCCCGCGCCCGCTCGCCGTCGGGCTCGAGATGGTCCAGGCCAAGTTCC
AGCCCGCGCTGGACGCCTTTGTGGCCGGCCGCCTGTCCGAGCTCGACCTC
TACCTGCGCACCGAGTGGGACACACGCTGGGTCTGGCCCTACGAGCTCTA
CCTCCCCGTGCTGCGTGCGTGCCGCCGCCTCGCCGTCCCACTCGTCGCCC
TGGCCATCGACTCGGAGAAGCTGGCCGCCCTGCGCGCGCGTCCCGCCCCG
CCCGCCGCGCGCTCCGCACTCGACCTCGCCGCCCCGCTGCCGCAGCCGCA
GCCGCAGCCGCACCCGGACCCGGACCCGGACCCAGCCGTCTTCGCCGCAA
TCATGCGCGAGCCGGGCTTCAAGCGCTACGTCAACGAGTGCATCACCCCG
AGCTACGCTGCGCATTACAAGCTCGGCCTGCTGTCGGAGGCCACCGACTT
CAGCACCTACTTCGCCAGCAGGATGTTCCGCGACCACGCCATGGCCACCA
ACGCCGTGCGCCACGTGCTGTCCGCCGCGCCCGGCACCACGCTCGTCTGC
CTGCTCGGCGCCGACCACGTCAAGTTCGAGTACGGCGTCGCCGGCAGGGT
GCGCCGCCTGCTCGCCGCCCACCGCGCGCGCGCGCCGCCCGCCGCCGCCG
ACGCCGCCGACGCCGCCGGCGTGCGCGCGGAGACGCGCGCGTCGCCGCCC
GACCCGCTCCTCAAGACCGTCATGCTCAACCCCGCCCCGCCGGACGCTTA
CGACGCCGCCGACGGCAGCCTCAAGCTCGAAATGCCTGTCGGCGACGTGC
AGCTGCCCATTGCCGACTATCTCTGGTTCAGCTCCGCCGCCGACGCCAAC
CCCAGGAAGCAGATTAAGCGCCGGGTGCTTCCGCCGATTGAGCGTTTAAC
CAGCTCGTGA
back to top