Gvermi12841.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12841.t1
Unique NameGvermi12841.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1769953..1770494 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc03g025690.2.1
Max annot lvl35493|Streptophyta
Evalue1.22e-06
EggNOG OGs2BKCE@1|root,2S1IB@2759|Eukaryota,37VDP@33090|Viridiplantae,3GJMI@35493|Streptophyta,44KTS@71274|asterids
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12841Gvermi12841Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1769953..1770494 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12841.t1Gvermi12841.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1769953..1770494 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12841.t1.start1Gvermi12841.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1769953..1769955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12841.t1.CDS1Gvermi12841.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1769953..1769992 +
Gvermi12841.t1.CDS2Gvermi12841.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1770085..1770152 +
Gvermi12841.t1.CDS3Gvermi12841.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1770258..1770494 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12841.t1.exon1Gvermi12841.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1769953..1769992 +
Gvermi12841.t1.exon2Gvermi12841.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1770085..1770152 +
Gvermi12841.t1.exon3Gvermi12841.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1770258..1770494 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12841.t1.intron1Gvermi12841.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1769993..1770084 +
Gvermi12841.t1.intron2Gvermi12841.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1770153..1770257 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12841.t1.stop1Gvermi12841.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1770492..1770494 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12841.t1 ID=Gvermi12841.t1|Name=Gvermi12841.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=115bp
LSALPVGSIIAAGVSMGILAATFENMLNVLHKRRGVVISDDELCAYCSGF
GNVRCEVCNSRGAVFVGVTYFQRVCPACNGKKREKCRRCAGSGKSGMKKS
QIQLEEQPSDQSLQ*
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spliced messenger RNA

>Gvermi12841.t1 ID=Gvermi12841.t1|Name=Gvermi12841.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=345bp|location=Sequence derived from alignment at ScGOVlb_425:1769953..1770494+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTCGGCGCTCCCCGTCGGGAGTATTATTGCTGCTGGCGTCTCCATGGG
TATTCTAGCCGCCACATTTGAGAACATGCTCAATGTCCTGCATAAGCGGA
GAGGCGTGGTCATTTCGGACGATGAACTATGCGCCTATTGCTCAGGGTTT
GGAAACGTGCGCTGCGAGGTGTGCAATTCCCGCGGTGCTGTCTTTGTCGG
CGTCACCTACTTTCAGCGAGTATGTCCCGCCTGCAACGGAAAGAAGCGCG
AAAAGTGCAGAAGATGCGCGGGCAGCGGCAAGAGCGGAATGAAGAAGTCA
CAAATTCAACTCGAGGAACAACCTTCAGACCAATCGCTGCAATAA
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protein sequence of Gvermi12841.t1

>Gvermi12841.t1 ID=Gvermi12841.t1|Name=Gvermi12841.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=115bp
LSALPVGSIIAAGVSMGILAATFENMLNVLHKRRGVVISDDELCAYCSGF
GNVRCEVCNSRGAVFVGVTYFQRVCPACNGKKREKCRRCAGSGKSGMKKS
QIQLEEQPSDQSLQ*
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mRNA from alignment at ScGOVlb_425:1769953..1770494+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12841.t1 ID=Gvermi12841.t1|Name=Gvermi12841.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=542bp|location=Sequence derived from alignment at ScGOVlb_425:1769953..1770494+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTCGGCGCTCCCCGTCGGGAGTATTATTGCTGCTGGCGGTAGGTTGCC
ATTTTCTGTTCTTCTTTCGCGCGCACTTGTCCTGCGTGCATCTCTGCGGC
TAACAGGCTGGTGCTTTTGTGCTGTCTTGCAGTCTCCATGGGTATTCTAG
CCGCCACATTTGAGAACATGCTCAATGTCCTGCATAAGCGGAGAGGCGTG
GTACGTTTACGCAGCAGCTGCCACGATGTGCTGAGGTGCATCGGCCACGC
ATGGGGACAGAGCGTCTAACCAACAAACTGACCTTGTACCATCGATCAAA
AAAAGGTCATTTCGGACGATGAACTATGCGCCTATTGCTCAGGGTTTGGA
AACGTGCGCTGCGAGGTGTGCAATTCCCGCGGTGCTGTCTTTGTCGGCGT
CACCTACTTTCAGCGAGTATGTCCCGCCTGCAACGGAAAGAAGCGCGAAA
AGTGCAGAAGATGCGCGGGCAGCGGCAAGAGCGGAATGAAGAAGTCACAA
ATTCAACTCGAGGAACAACCTTCAGACCAATCGCTGCAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1769953..1770494+

>Gvermi12841.t1 ID=Gvermi12841.t1|Name=Gvermi12841.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=345bp|location=Sequence derived from alignment at ScGOVlb_425:1769953..1770494+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTCGGCGCTCCCCGTCGGGAGTATTATTGCTGCTGGCGTCTCCATGGG
TATTCTAGCCGCCACATTTGAGAACATGCTCAATGTCCTGCATAAGCGGA
GAGGCGTGGTCATTTCGGACGATGAACTATGCGCCTATTGCTCAGGGTTT
GGAAACGTGCGCTGCGAGGTGTGCAATTCCCGCGGTGCTGTCTTTGTCGG
CGTCACCTACTTTCAGCGAGTATGTCCCGCCTGCAACGGAAAGAAGCGCG
AAAAGTGCAGAAGATGCGCGGGCAGCGGCAAGAGCGGAATGAAGAAGTCA
CAAATTCAACTCGAGGAACAACCTTCAGACCAATCGCTGCAATAA
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