Gvermi12840.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12840.t1
Unique NameGvermi12840.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length613
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1767021..1768859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12840Gvermi12840Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1767021..1768859 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12840.t1.stop1Gvermi12840.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1767021..1767023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12840.t1.CDS1Gvermi12840.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1767021..1768859 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12840.t1.exon1Gvermi12840.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1767021..1768859 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12840.t1.start1Gvermi12840.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1768857..1768859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12840.t1Gvermi12840.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1767021..1768859 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12840.t1 ID=Gvermi12840.t1|Name=Gvermi12840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=613bp
MIPRIEACLLLFSFYVVTVVVTVSRPVALGVLEPNANHVSPVWPEVPRLK
PHDPTHLDLLRAAAKAQFSLTRLDEVSIHNDKKKKKKASKGKKKGKGKKN
DSKKKGKGKRNDSKKKNRQAKKKRAQNQKNKNNRRRHRPRPRTRSKSLKF
KPWTGCKTERRSCGKSCGQKQKSKCKVTVSSPRLCMSQVKEKYACAGQRV
AMCQGEEKEAAICTKLESKTMPCDMKLPDPKKVCKRRTVSVKCVPKICAT
YDRIPCKYKTVLQPCDRPSKKCNDCVGRYKLRQCSKTYNRDVEVECPPEL
LRNVTTAETAQSSPAASPSVPVSPTPSATPRPFEDSNVYASNARCLASLF
DEEECRYADRKCQLFSDWFDSTVCAVQVCEDCRQLRYMSVTPGLKRYCFE
LLQSSCRTLYSIHQVAIYRIQVPAEPESLSVTARTSNIKFNPVDGKCYKP
ESKTVSAPCNVPLPPNKSCINRCIVGTCERRIAKGRCRGNLPDKCKKPRK
CKKTETACSYVTEDLGMCEYKVPVEYVCYKKKKVSHPCFFSSRLSVLGNN
ILPTNLLQPPKKSADLVNNMPKLCTRFVSKKHLCGSMKKTLWAQCQQKGC
RKKNCIKEICRK*
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spliced messenger RNA

>Gvermi12840.t1 ID=Gvermi12840.t1|Name=Gvermi12840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at ScGOVlb_425:1767021..1768859- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCCTCGCATCGAAGCCTGTCTTCTTCTTTTTAGCTTTTATGTTGT
CACCGTAGTCGTTACAGTTTCTCGCCCCGTCGCCCTCGGTGTCTTGGAAC
CAAACGCGAACCATGTCTCTCCCGTTTGGCCGGAAGTTCCTCGTCTAAAG
CCCCACGACCCAACGCACCTCGATTTACTGCGTGCAGCGGCCAAGGCTCA
GTTTTCATTGACAAGACTTGATGAAGTGAGCATTCACAATGACAAAAAGA
AAAAGAAGAAGGCCTCCAAAGGAAAGAAAAAGGGCAAAGGTAAAAAGAAT
GACTCAAAGAAAAAGGGCAAAGGTAAAAGGAATGACTCCAAGAAAAAGAA
CAGACAAGCAAAGAAAAAACGGGCTCAAAACCAGAAAAATAAGAACAACC
GTCGCAGGCATCGCCCCCGCCCGCGGACGAGGTCAAAGTCGTTGAAGTTC
AAGCCGTGGACTGGATGCAAAACTGAACGGCGTTCTTGTGGCAAGAGTTG
CGGCCAGAAGCAGAAATCAAAATGTAAGGTAACCGTCTCATCTCCGCGCT
TGTGTATGTCGCAAGTAAAGGAGAAGTATGCGTGTGCCGGTCAAAGAGTT
GCGATGTGCCAAGGCGAAGAAAAAGAAGCGGCCATTTGCACGAAACTGGA
AAGCAAGACCATGCCATGTGACATGAAACTCCCTGATCCTAAGAAGGTCT
GCAAGAGAAGAACAGTGAGCGTGAAATGCGTCCCAAAGATTTGTGCAACA
TACGATCGAATTCCATGCAAATACAAAACTGTTCTTCAGCCATGTGATCG
GCCGTCAAAGAAGTGCAACGACTGCGTGGGAAGGTACAAACTGAGACAAT
GTTCAAAAACATACAACCGTGATGTCGAAGTCGAATGTCCTCCGGAACTT
CTACGGAACGTAACAACCGCCGAAACGGCCCAATCCTCCCCTGCAGCATC
ACCATCCGTCCCAGTTTCTCCAACTCCATCTGCAACGCCTAGGCCTTTCG
AGGATAGTAATGTGTATGCCAGCAACGCCCGTTGTCTTGCTTCCTTGTTC
GATGAAGAAGAATGCAGATACGCCGACCGCAAATGTCAATTGTTCTCTGA
CTGGTTTGATTCGACTGTATGCGCTGTGCAAGTGTGCGAAGACTGTCGAC
AGTTGCGATACATGTCTGTCACACCAGGGCTGAAAAGATATTGTTTCGAA
TTGCTGCAGTCGAGTTGCAGAACTTTATATTCTATCCATCAAGTTGCAAT
TTACAGGATCCAAGTTCCCGCTGAACCAGAATCCCTTTCTGTGACTGCAA
GGACGTCGAACATCAAGTTTAACCCTGTTGATGGCAAATGCTACAAACCA
GAGTCTAAAACTGTTTCTGCTCCATGCAATGTTCCTTTGCCCCCCAATAA
GTCATGCATCAATCGCTGTATTGTTGGCACATGTGAACGGCGAATCGCGA
AGGGACGTTGTCGAGGGAATCTTCCAGACAAATGCAAGAAACCGAGGAAA
TGTAAGAAGACTGAAACGGCATGTTCGTACGTTACGGAAGATCTTGGAAT
GTGTGAGTACAAGGTCCCTGTCGAATACGTATGCTACAAAAAGAAGAAAG
TTTCTCATCCTTGCTTCTTTAGCTCCCGGCTTTCAGTTCTTGGAAACAAT
ATTCTGCCCACGAATCTTCTACAGCCACCGAAGAAATCTGCCGACCTGGT
TAACAACATGCCGAAGCTTTGTACACGGTTTGTGTCCAAGAAACATCTGT
GTGGGAGTATGAAGAAGACGCTATGGGCCCAATGCCAGCAGAAAGGCTGT
AGAAAGAAGAACTGCATCAAGGAAATATGCAGAAAGTAA
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protein sequence of Gvermi12840.t1

>Gvermi12840.t1 ID=Gvermi12840.t1|Name=Gvermi12840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=613bp
MIPRIEACLLLFSFYVVTVVVTVSRPVALGVLEPNANHVSPVWPEVPRLK
PHDPTHLDLLRAAAKAQFSLTRLDEVSIHNDKKKKKKASKGKKKGKGKKN
DSKKKGKGKRNDSKKKNRQAKKKRAQNQKNKNNRRRHRPRPRTRSKSLKF
KPWTGCKTERRSCGKSCGQKQKSKCKVTVSSPRLCMSQVKEKYACAGQRV
AMCQGEEKEAAICTKLESKTMPCDMKLPDPKKVCKRRTVSVKCVPKICAT
YDRIPCKYKTVLQPCDRPSKKCNDCVGRYKLRQCSKTYNRDVEVECPPEL
LRNVTTAETAQSSPAASPSVPVSPTPSATPRPFEDSNVYASNARCLASLF
DEEECRYADRKCQLFSDWFDSTVCAVQVCEDCRQLRYMSVTPGLKRYCFE
LLQSSCRTLYSIHQVAIYRIQVPAEPESLSVTARTSNIKFNPVDGKCYKP
ESKTVSAPCNVPLPPNKSCINRCIVGTCERRIAKGRCRGNLPDKCKKPRK
CKKTETACSYVTEDLGMCEYKVPVEYVCYKKKKVSHPCFFSSRLSVLGNN
ILPTNLLQPPKKSADLVNNMPKLCTRFVSKKHLCGSMKKTLWAQCQQKGC
RKKNCIKEICRK*
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mRNA from alignment at ScGOVlb_425:1767021..1768859-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12840.t1 ID=Gvermi12840.t1|Name=Gvermi12840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at ScGOVlb_425:1767021..1768859- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCCCTCGCATCGAAGCCTGTCTTCTTCTTTTTAGCTTTTATGTTGT
CACCGTAGTCGTTACAGTTTCTCGCCCCGTCGCCCTCGGTGTCTTGGAAC
CAAACGCGAACCATGTCTCTCCCGTTTGGCCGGAAGTTCCTCGTCTAAAG
CCCCACGACCCAACGCACCTCGATTTACTGCGTGCAGCGGCCAAGGCTCA
GTTTTCATTGACAAGACTTGATGAAGTGAGCATTCACAATGACAAAAAGA
AAAAGAAGAAGGCCTCCAAAGGAAAGAAAAAGGGCAAAGGTAAAAAGAAT
GACTCAAAGAAAAAGGGCAAAGGTAAAAGGAATGACTCCAAGAAAAAGAA
CAGACAAGCAAAGAAAAAACGGGCTCAAAACCAGAAAAATAAGAACAACC
GTCGCAGGCATCGCCCCCGCCCGCGGACGAGGTCAAAGTCGTTGAAGTTC
AAGCCGTGGACTGGATGCAAAACTGAACGGCGTTCTTGTGGCAAGAGTTG
CGGCCAGAAGCAGAAATCAAAATGTAAGGTAACCGTCTCATCTCCGCGCT
TGTGTATGTCGCAAGTAAAGGAGAAGTATGCGTGTGCCGGTCAAAGAGTT
GCGATGTGCCAAGGCGAAGAAAAAGAAGCGGCCATTTGCACGAAACTGGA
AAGCAAGACCATGCCATGTGACATGAAACTCCCTGATCCTAAGAAGGTCT
GCAAGAGAAGAACAGTGAGCGTGAAATGCGTCCCAAAGATTTGTGCAACA
TACGATCGAATTCCATGCAAATACAAAACTGTTCTTCAGCCATGTGATCG
GCCGTCAAAGAAGTGCAACGACTGCGTGGGAAGGTACAAACTGAGACAAT
GTTCAAAAACATACAACCGTGATGTCGAAGTCGAATGTCCTCCGGAACTT
CTACGGAACGTAACAACCGCCGAAACGGCCCAATCCTCCCCTGCAGCATC
ACCATCCGTCCCAGTTTCTCCAACTCCATCTGCAACGCCTAGGCCTTTCG
AGGATAGTAATGTGTATGCCAGCAACGCCCGTTGTCTTGCTTCCTTGTTC
GATGAAGAAGAATGCAGATACGCCGACCGCAAATGTCAATTGTTCTCTGA
CTGGTTTGATTCGACTGTATGCGCTGTGCAAGTGTGCGAAGACTGTCGAC
AGTTGCGATACATGTCTGTCACACCAGGGCTGAAAAGATATTGTTTCGAA
TTGCTGCAGTCGAGTTGCAGAACTTTATATTCTATCCATCAAGTTGCAAT
TTACAGGATCCAAGTTCCCGCTGAACCAGAATCCCTTTCTGTGACTGCAA
GGACGTCGAACATCAAGTTTAACCCTGTTGATGGCAAATGCTACAAACCA
GAGTCTAAAACTGTTTCTGCTCCATGCAATGTTCCTTTGCCCCCCAATAA
GTCATGCATCAATCGCTGTATTGTTGGCACATGTGAACGGCGAATCGCGA
AGGGACGTTGTCGAGGGAATCTTCCAGACAAATGCAAGAAACCGAGGAAA
TGTAAGAAGACTGAAACGGCATGTTCGTACGTTACGGAAGATCTTGGAAT
GTGTGAGTACAAGGTCCCTGTCGAATACGTATGCTACAAAAAGAAGAAAG
TTTCTCATCCTTGCTTCTTTAGCTCCCGGCTTTCAGTTCTTGGAAACAAT
ATTCTGCCCACGAATCTTCTACAGCCACCGAAGAAATCTGCCGACCTGGT
TAACAACATGCCGAAGCTTTGTACACGGTTTGTGTCCAAGAAACATCTGT
GTGGGAGTATGAAGAAGACGCTATGGGCCCAATGCCAGCAGAAAGGCTGT
AGAAAGAAGAACTGCATCAAGGAAATATGCAGAAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1767021..1768859-

>Gvermi12840.t1 ID=Gvermi12840.t1|Name=Gvermi12840.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1839bp|location=Sequence derived from alignment at ScGOVlb_425:1767021..1768859- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCCCTCGCATCGAAGCCTGTCTTCTTCTTTTTAGCTTTTATGTTGT
CACCGTAGTCGTTACAGTTTCTCGCCCCGTCGCCCTCGGTGTCTTGGAAC
CAAACGCGAACCATGTCTCTCCCGTTTGGCCGGAAGTTCCTCGTCTAAAG
CCCCACGACCCAACGCACCTCGATTTACTGCGTGCAGCGGCCAAGGCTCA
GTTTTCATTGACAAGACTTGATGAAGTGAGCATTCACAATGACAAAAAGA
AAAAGAAGAAGGCCTCCAAAGGAAAGAAAAAGGGCAAAGGTAAAAAGAAT
GACTCAAAGAAAAAGGGCAAAGGTAAAAGGAATGACTCCAAGAAAAAGAA
CAGACAAGCAAAGAAAAAACGGGCTCAAAACCAGAAAAATAAGAACAACC
GTCGCAGGCATCGCCCCCGCCCGCGGACGAGGTCAAAGTCGTTGAAGTTC
AAGCCGTGGACTGGATGCAAAACTGAACGGCGTTCTTGTGGCAAGAGTTG
CGGCCAGAAGCAGAAATCAAAATGTAAGGTAACCGTCTCATCTCCGCGCT
TGTGTATGTCGCAAGTAAAGGAGAAGTATGCGTGTGCCGGTCAAAGAGTT
GCGATGTGCCAAGGCGAAGAAAAAGAAGCGGCCATTTGCACGAAACTGGA
AAGCAAGACCATGCCATGTGACATGAAACTCCCTGATCCTAAGAAGGTCT
GCAAGAGAAGAACAGTGAGCGTGAAATGCGTCCCAAAGATTTGTGCAACA
TACGATCGAATTCCATGCAAATACAAAACTGTTCTTCAGCCATGTGATCG
GCCGTCAAAGAAGTGCAACGACTGCGTGGGAAGGTACAAACTGAGACAAT
GTTCAAAAACATACAACCGTGATGTCGAAGTCGAATGTCCTCCGGAACTT
CTACGGAACGTAACAACCGCCGAAACGGCCCAATCCTCCCCTGCAGCATC
ACCATCCGTCCCAGTTTCTCCAACTCCATCTGCAACGCCTAGGCCTTTCG
AGGATAGTAATGTGTATGCCAGCAACGCCCGTTGTCTTGCTTCCTTGTTC
GATGAAGAAGAATGCAGATACGCCGACCGCAAATGTCAATTGTTCTCTGA
CTGGTTTGATTCGACTGTATGCGCTGTGCAAGTGTGCGAAGACTGTCGAC
AGTTGCGATACATGTCTGTCACACCAGGGCTGAAAAGATATTGTTTCGAA
TTGCTGCAGTCGAGTTGCAGAACTTTATATTCTATCCATCAAGTTGCAAT
TTACAGGATCCAAGTTCCCGCTGAACCAGAATCCCTTTCTGTGACTGCAA
GGACGTCGAACATCAAGTTTAACCCTGTTGATGGCAAATGCTACAAACCA
GAGTCTAAAACTGTTTCTGCTCCATGCAATGTTCCTTTGCCCCCCAATAA
GTCATGCATCAATCGCTGTATTGTTGGCACATGTGAACGGCGAATCGCGA
AGGGACGTTGTCGAGGGAATCTTCCAGACAAATGCAAGAAACCGAGGAAA
TGTAAGAAGACTGAAACGGCATGTTCGTACGTTACGGAAGATCTTGGAAT
GTGTGAGTACAAGGTCCCTGTCGAATACGTATGCTACAAAAAGAAGAAAG
TTTCTCATCCTTGCTTCTTTAGCTCCCGGCTTTCAGTTCTTGGAAACAAT
ATTCTGCCCACGAATCTTCTACAGCCACCGAAGAAATCTGCCGACCTGGT
TAACAACATGCCGAAGCTTTGTACACGGTTTGTGTCCAAGAAACATCTGT
GTGGGAGTATGAAGAAGACGCTATGGGCCCAATGCCAGCAGAAAGGCTGT
AGAAAGAAGAACTGCATCAAGGAAATATGCAGAAAGTAA
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