Gvermi12838.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12838.t1
Unique Name	Gvermi12838.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	356

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1763353..1764420 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	148960.XP_006959276.1
PFAMs	Inhibitor_I9,Peptidase_S8
Max annot lvl	4751\|Fungi
KEGG ko	ko:K01336
KEGG Pathway	ko04138,map04138
Evalue	7.23e-42
EggNOG OGs	COG1404@1\|root,KOG1153@2759\|Eukaryota,38H6S@33154\|Opisthokonta,3NU05@4751\|Fungi,3UZAU@5204\|Basidiomycota
EC	3.4.21.48
Description	Belongs to the peptidase S8 family
COG category	O
BRITE	ko00000,ko00001,ko01000,ko01002,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12838	Gvermi12838	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1763353..1764420 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12838.t1.start1	Gvermi12838.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1763353..1763355 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12838.t1.CDS1	Gvermi12838.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1763353..1764420 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12838.t1.exon1	Gvermi12838.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1763353..1764420 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12838.t1.stop1	Gvermi12838.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1764418..1764420 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12838.t1	Gvermi12838.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1763353..1764420 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1763353..1764420+
coding sequence from alignment at ScGOVlb_425:1763353..1764420+

mRNA sequence

>Gvermi12838.t1 ID=Gvermi12838.t1|Name=Gvermi12838.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=356bp
MIKAKCGSKALRLVKRSRRFIAVHQDQVIRLATPLYAEPKTDYDHVRTEF
PPARQRSFEKITPLSFNENRTGAIAWDGSLVDLSSQRIAERCSLNGGLGV
TVYVIDTGCRSSHEQLRGRVRTVVAPGSKYQSGEDDHGHGTHVAATIGGR
DFGIAPKVRLVCIKALSERNEGSANDVVAGVQLAIRMHKGQRGPGIISIS
LGGRAVKRYTVLDAAVNTASRAGLSFVVAAGNAGANACSFTPGRARRAIT
VAAVDAEGRIASFSNSGSCVSVGAPGVRVWSAVADEDDAYGVSSGTSMAA
PFVSGLLALLVGDRGKTRVSTLRRWLKDMSGNGQDGIPVVSARSFCEWRR
KSSRK*

spliced messenger RNA

>Gvermi12838.t1 ID=Gvermi12838.t1|Name=Gvermi12838.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at ScGOVlb_425:1763353..1764420+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAAAGGCCAAGTGCGGAAGCAAGGCTCTCAGACTGGTTAAACGAAG
TCGCAGATTTATCGCAGTTCACCAGGACCAGGTAATTCGACTCGCGACTC
CTTTGTATGCTGAACCTAAAACAGATTACGATCATGTACGAACCGAATTC
CCCCCAGCACGACAACGATCGTTCGAGAAGATTACACCGTTGTCATTCAA
TGAAAACCGTACCGGGGCCATTGCATGGGATGGAAGTTTAGTAGATCTGA
GCTCGCAAAGAATTGCCGAGAGATGTTCCCTTAATGGTGGTTTAGGTGTG
ACTGTGTATGTCATTGATACTGGTTGTAGGAGCAGTCATGAGCAATTGCG
AGGTCGAGTACGAACGGTCGTAGCTCCTGGTAGTAAATATCAGTCTGGGG
AAGATGATCATGGCCATGGAACTCATGTGGCTGCCACAATTGGGGGGCGA
GACTTTGGAATAGCACCAAAAGTGAGGCTTGTGTGCATTAAAGCACTGTC
TGAACGAAATGAAGGTAGTGCGAATGATGTAGTTGCCGGAGTGCAATTGG
CAATAAGGATGCATAAAGGGCAACGCGGGCCGGGAATTATATCTATCTCG
CTCGGTGGCCGTGCAGTGAAAAGGTACACGGTCTTAGATGCGGCAGTAAA
CACAGCATCTAGAGCAGGATTAAGCTTCGTTGTCGCAGCAGGAAATGCCG
GTGCAAACGCATGCTCATTTACGCCAGGAAGAGCTCGAAGAGCGATCACA
GTTGCTGCAGTGGACGCAGAGGGAAGAATTGCCTCGTTCTCCAATTCTGG
TTCATGTGTTAGCGTCGGTGCTCCTGGGGTACGGGTGTGGAGCGCGGTAG
CTGACGAAGATGATGCGTATGGGGTGAGCTCTGGAACTTCGATGGCCGCT
CCGTTTGTCTCCGGCCTCTTAGCTCTCTTGGTCGGCGACCGGGGCAAAAC
ACGTGTGAGCACATTGAGAAGATGGTTGAAGGACATGAGTGGAAATGGCC
AGGACGGCATTCCGGTTGTTTCAGCGAGGTCCTTTTGCGAGTGGCGCCGA
AAGTCGAGTCGGAAGTGA

protein sequence of Gvermi12838.t1

>Gvermi12838.t1 ID=Gvermi12838.t1|Name=Gvermi12838.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=356bp
MIKAKCGSKALRLVKRSRRFIAVHQDQVIRLATPLYAEPKTDYDHVRTEF
PPARQRSFEKITPLSFNENRTGAIAWDGSLVDLSSQRIAERCSLNGGLGV
TVYVIDTGCRSSHEQLRGRVRTVVAPGSKYQSGEDDHGHGTHVAATIGGR
DFGIAPKVRLVCIKALSERNEGSANDVVAGVQLAIRMHKGQRGPGIISIS
LGGRAVKRYTVLDAAVNTASRAGLSFVVAAGNAGANACSFTPGRARRAIT
VAAVDAEGRIASFSNSGSCVSVGAPGVRVWSAVADEDDAYGVSSGTSMAA
PFVSGLLALLVGDRGKTRVSTLRRWLKDMSGNGQDGIPVVSARSFCEWRR
KSSRK*

mRNA from alignment at ScGOVlb_425:1763353..1764420+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12838.t1 ID=Gvermi12838.t1|Name=Gvermi12838.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at ScGOVlb_425:1763353..1764420+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATAAAGGCCAAGTGCGGAAGCAAGGCTCTCAGACTGGTTAAACGAAG
TCGCAGATTTATCGCAGTTCACCAGGACCAGGTAATTCGACTCGCGACTC
CTTTGTATGCTGAACCTAAAACAGATTACGATCATGTACGAACCGAATTC
CCCCCAGCACGACAACGATCGTTCGAGAAGATTACACCGTTGTCATTCAA
TGAAAACCGTACCGGGGCCATTGCATGGGATGGAAGTTTAGTAGATCTGA
GCTCGCAAAGAATTGCCGAGAGATGTTCCCTTAATGGTGGTTTAGGTGTG
ACTGTGTATGTCATTGATACTGGTTGTAGGAGCAGTCATGAGCAATTGCG
AGGTCGAGTACGAACGGTCGTAGCTCCTGGTAGTAAATATCAGTCTGGGG
AAGATGATCATGGCCATGGAACTCATGTGGCTGCCACAATTGGGGGGCGA
GACTTTGGAATAGCACCAAAAGTGAGGCTTGTGTGCATTAAAGCACTGTC
TGAACGAAATGAAGGTAGTGCGAATGATGTAGTTGCCGGAGTGCAATTGG
CAATAAGGATGCATAAAGGGCAACGCGGGCCGGGAATTATATCTATCTCG
CTCGGTGGCCGTGCAGTGAAAAGGTACACGGTCTTAGATGCGGCAGTAAA
CACAGCATCTAGAGCAGGATTAAGCTTCGTTGTCGCAGCAGGAAATGCCG
GTGCAAACGCATGCTCATTTACGCCAGGAAGAGCTCGAAGAGCGATCACA
GTTGCTGCAGTGGACGCAGAGGGAAGAATTGCCTCGTTCTCCAATTCTGG
TTCATGTGTTAGCGTCGGTGCTCCTGGGGTACGGGTGTGGAGCGCGGTAG
CTGACGAAGATGATGCGTATGGGGTGAGCTCTGGAACTTCGATGGCCGCT
CCGTTTGTCTCCGGCCTCTTAGCTCTCTTGGTCGGCGACCGGGGCAAAAC
ACGTGTGAGCACATTGAGAAGATGGTTGAAGGACATGAGTGGAAATGGCC
AGGACGGCATTCCGGTTGTTTCAGCGAGGTCCTTTTGCGAGTGGCGCCGA
AAGTCGAGTCGGAAGTGA

Coding sequence (CDS) from alignment at ScGOVlb_425:1763353..1764420+

>Gvermi12838.t1 ID=Gvermi12838.t1|Name=Gvermi12838.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1068bp|location=Sequence derived from alignment at ScGOVlb_425:1763353..1764420+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATAAAGGCCAAGTGCGGAAGCAAGGCTCTCAGACTGGTTAAACGAAG
TCGCAGATTTATCGCAGTTCACCAGGACCAGGTAATTCGACTCGCGACTC
CTTTGTATGCTGAACCTAAAACAGATTACGATCATGTACGAACCGAATTC
CCCCCAGCACGACAACGATCGTTCGAGAAGATTACACCGTTGTCATTCAA
TGAAAACCGTACCGGGGCCATTGCATGGGATGGAAGTTTAGTAGATCTGA
GCTCGCAAAGAATTGCCGAGAGATGTTCCCTTAATGGTGGTTTAGGTGTG
ACTGTGTATGTCATTGATACTGGTTGTAGGAGCAGTCATGAGCAATTGCG
AGGTCGAGTACGAACGGTCGTAGCTCCTGGTAGTAAATATCAGTCTGGGG
AAGATGATCATGGCCATGGAACTCATGTGGCTGCCACAATTGGGGGGCGA
GACTTTGGAATAGCACCAAAAGTGAGGCTTGTGTGCATTAAAGCACTGTC
TGAACGAAATGAAGGTAGTGCGAATGATGTAGTTGCCGGAGTGCAATTGG
CAATAAGGATGCATAAAGGGCAACGCGGGCCGGGAATTATATCTATCTCG
CTCGGTGGCCGTGCAGTGAAAAGGTACACGGTCTTAGATGCGGCAGTAAA
CACAGCATCTAGAGCAGGATTAAGCTTCGTTGTCGCAGCAGGAAATGCCG
GTGCAAACGCATGCTCATTTACGCCAGGAAGAGCTCGAAGAGCGATCACA
GTTGCTGCAGTGGACGCAGAGGGAAGAATTGCCTCGTTCTCCAATTCTGG
TTCATGTGTTAGCGTCGGTGCTCCTGGGGTACGGGTGTGGAGCGCGGTAG
CTGACGAAGATGATGCGTATGGGGTGAGCTCTGGAACTTCGATGGCCGCT
CCGTTTGTCTCCGGCCTCTTAGCTCTCTTGGTCGGCGACCGGGGCAAAAC
ACGTGTGAGCACATTGAGAAGATGGTTGAAGGACATGAGTGGAAATGGCC
AGGACGGCATTCCGGTTGTTTCAGCGAGGTCCTTTTGCGAGTGGCGCCGA
AAGTCGAGTCGGAAGTGA