Gvermi12836.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12836.t1
Unique NameGvermi12836.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1754040..1755023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121272.KB903290_gene4504
PFAMsADH_N,ADH_zinc_N,ADH_zinc_N_2
Max annot lvl201174|Actinobacteria
Evalue1.46e-05
EggNOG OGsCOG0604@1|root,COG0604@2|Bacteria,2GIS3@201174|Actinobacteria,4DC7S@85008|Micromonosporales
DescriptionAlcohol dehydrogenase zinc-binding domain protein
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12836Gvermi12836Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1754040..1755023 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12836.t1.start1Gvermi12836.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1754040..1754042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12836.t1.CDS1Gvermi12836.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1754040..1755023 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12836.t1.exon1Gvermi12836.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1754040..1755023 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12836.t1.stop1Gvermi12836.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1755021..1755023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12836.t1Gvermi12836.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1754040..1755023 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12836.t1 ID=Gvermi12836.t1|Name=Gvermi12836.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=328bp
MTEPSPPPPLSMYALFLTRDRTRHFQLLAGAVPVPPVAPHQLLVEVKAAA
VGLRDVAVCKALRALPGLRNRARAPVPGCALAGVVLRAPQHSEFKPGQAV
AALSRFGGAFGPYAALTPSECWRTNLPFADAAVTAGAASAAFQAVRAAAV
KPGHTVAIAGVLTATGALIAQTCRLVYGARVVAGVHGLDQKNAACTYADV
VIDRTVEKVSSKISHLRIDAVFDVEGRLEQLCRIVKNGGVVIRVLSSVEI
VREKRAKRVRRMCQKKNITLRRIEGCIDSKAVESTKNLLHTLQLSAPSGP
AFGLKQWGAALRAAEQGVDVGAVLLLH*
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spliced messenger RNA

>Gvermi12836.t1 ID=Gvermi12836.t1|Name=Gvermi12836.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_425:1754040..1755023+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGAGCCGTCCCCCCCACCGCCGCTGTCCATGTACGCCCTGTTCCT
CACGCGCGACCGCACCCGCCACTTCCAGCTGCTCGCCGGCGCGGTGCCCG
TGCCGCCCGTCGCCCCGCACCAGCTGCTGGTCGAGGTCAAGGCCGCTGCC
GTCGGCCTGCGCGACGTCGCCGTCTGCAAGGCGCTCCGCGCGCTGCCCGG
CCTCCGCAACCGCGCGCGCGCGCCGGTGCCCGGCTGCGCCCTGGCCGGCG
TCGTGCTGCGCGCCCCGCAGCACTCCGAGTTCAAGCCTGGCCAGGCCGTT
GCCGCCCTCTCCCGCTTCGGCGGCGCCTTCGGCCCCTATGCCGCCCTCAC
GCCCTCCGAGTGCTGGCGCACCAACCTGCCGTTCGCCGATGCCGCCGTCA
CCGCCGGTGCCGCCTCGGCCGCCTTCCAGGCAGTCCGCGCCGCCGCCGTC
AAGCCTGGGCACACCGTCGCCATCGCGGGCGTCCTCACCGCCACCGGCGC
CCTCATCGCCCAGACCTGTCGCCTGGTCTACGGAGCGCGTGTGGTGGCGG
GCGTGCACGGCCTCGACCAGAAGAACGCTGCATGCACCTACGCTGACGTC
GTCATCGATCGCACCGTGGAAAAGGTTTCCTCAAAGATTTCGCACCTACG
CATCGACGCCGTCTTTGATGTCGAGGGCCGATTGGAACAGCTGTGCCGCA
TCGTCAAGAACGGCGGCGTGGTTATTCGCGTTCTCTCCTCCGTCGAGATC
GTGCGTGAAAAGCGGGCCAAACGCGTGCGTCGCATGTGCCAAAAGAAAAA
CATTACGCTTCGACGCATCGAGGGGTGCATTGATTCGAAGGCGGTGGAGA
GCACTAAGAATTTGCTTCATACTTTGCAACTGTCGGCGCCAAGTGGACCT
GCGTTTGGCCTCAAGCAGTGGGGTGCTGCTTTGCGAGCTGCCGAGCAAGG
TGTAGACGTTGGTGCTGTGCTTTTGCTTCATTGA
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protein sequence of Gvermi12836.t1

>Gvermi12836.t1 ID=Gvermi12836.t1|Name=Gvermi12836.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=328bp
MTEPSPPPPLSMYALFLTRDRTRHFQLLAGAVPVPPVAPHQLLVEVKAAA
VGLRDVAVCKALRALPGLRNRARAPVPGCALAGVVLRAPQHSEFKPGQAV
AALSRFGGAFGPYAALTPSECWRTNLPFADAAVTAGAASAAFQAVRAAAV
KPGHTVAIAGVLTATGALIAQTCRLVYGARVVAGVHGLDQKNAACTYADV
VIDRTVEKVSSKISHLRIDAVFDVEGRLEQLCRIVKNGGVVIRVLSSVEI
VREKRAKRVRRMCQKKNITLRRIEGCIDSKAVESTKNLLHTLQLSAPSGP
AFGLKQWGAALRAAEQGVDVGAVLLLH*
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mRNA from alignment at ScGOVlb_425:1754040..1755023+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12836.t1 ID=Gvermi12836.t1|Name=Gvermi12836.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_425:1754040..1755023+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGAGCCGTCCCCCCCACCGCCGCTGTCCATGTACGCCCTGTTCCT
CACGCGCGACCGCACCCGCCACTTCCAGCTGCTCGCCGGCGCGGTGCCCG
TGCCGCCCGTCGCCCCGCACCAGCTGCTGGTCGAGGTCAAGGCCGCTGCC
GTCGGCCTGCGCGACGTCGCCGTCTGCAAGGCGCTCCGCGCGCTGCCCGG
CCTCCGCAACCGCGCGCGCGCGCCGGTGCCCGGCTGCGCCCTGGCCGGCG
TCGTGCTGCGCGCCCCGCAGCACTCCGAGTTCAAGCCTGGCCAGGCCGTT
GCCGCCCTCTCCCGCTTCGGCGGCGCCTTCGGCCCCTATGCCGCCCTCAC
GCCCTCCGAGTGCTGGCGCACCAACCTGCCGTTCGCCGATGCCGCCGTCA
CCGCCGGTGCCGCCTCGGCCGCCTTCCAGGCAGTCCGCGCCGCCGCCGTC
AAGCCTGGGCACACCGTCGCCATCGCGGGCGTCCTCACCGCCACCGGCGC
CCTCATCGCCCAGACCTGTCGCCTGGTCTACGGAGCGCGTGTGGTGGCGG
GCGTGCACGGCCTCGACCAGAAGAACGCTGCATGCACCTACGCTGACGTC
GTCATCGATCGCACCGTGGAAAAGGTTTCCTCAAAGATTTCGCACCTACG
CATCGACGCCGTCTTTGATGTCGAGGGCCGATTGGAACAGCTGTGCCGCA
TCGTCAAGAACGGCGGCGTGGTTATTCGCGTTCTCTCCTCCGTCGAGATC
GTGCGTGAAAAGCGGGCCAAACGCGTGCGTCGCATGTGCCAAAAGAAAAA
CATTACGCTTCGACGCATCGAGGGGTGCATTGATTCGAAGGCGGTGGAGA
GCACTAAGAATTTGCTTCATACTTTGCAACTGTCGGCGCCAAGTGGACCT
GCGTTTGGCCTCAAGCAGTGGGGTGCTGCTTTGCGAGCTGCCGAGCAAGG
TGTAGACGTTGGTGCTGTGCTTTTGCTTCATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1754040..1755023+

>Gvermi12836.t1 ID=Gvermi12836.t1|Name=Gvermi12836.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=984bp|location=Sequence derived from alignment at ScGOVlb_425:1754040..1755023+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGAGCCGTCCCCCCCACCGCCGCTGTCCATGTACGCCCTGTTCCT
CACGCGCGACCGCACCCGCCACTTCCAGCTGCTCGCCGGCGCGGTGCCCG
TGCCGCCCGTCGCCCCGCACCAGCTGCTGGTCGAGGTCAAGGCCGCTGCC
GTCGGCCTGCGCGACGTCGCCGTCTGCAAGGCGCTCCGCGCGCTGCCCGG
CCTCCGCAACCGCGCGCGCGCGCCGGTGCCCGGCTGCGCCCTGGCCGGCG
TCGTGCTGCGCGCCCCGCAGCACTCCGAGTTCAAGCCTGGCCAGGCCGTT
GCCGCCCTCTCCCGCTTCGGCGGCGCCTTCGGCCCCTATGCCGCCCTCAC
GCCCTCCGAGTGCTGGCGCACCAACCTGCCGTTCGCCGATGCCGCCGTCA
CCGCCGGTGCCGCCTCGGCCGCCTTCCAGGCAGTCCGCGCCGCCGCCGTC
AAGCCTGGGCACACCGTCGCCATCGCGGGCGTCCTCACCGCCACCGGCGC
CCTCATCGCCCAGACCTGTCGCCTGGTCTACGGAGCGCGTGTGGTGGCGG
GCGTGCACGGCCTCGACCAGAAGAACGCTGCATGCACCTACGCTGACGTC
GTCATCGATCGCACCGTGGAAAAGGTTTCCTCAAAGATTTCGCACCTACG
CATCGACGCCGTCTTTGATGTCGAGGGCCGATTGGAACAGCTGTGCCGCA
TCGTCAAGAACGGCGGCGTGGTTATTCGCGTTCTCTCCTCCGTCGAGATC
GTGCGTGAAAAGCGGGCCAAACGCGTGCGTCGCATGTGCCAAAAGAAAAA
CATTACGCTTCGACGCATCGAGGGGTGCATTGATTCGAAGGCGGTGGAGA
GCACTAAGAATTTGCTTCATACTTTGCAACTGTCGGCGCCAAGTGGACCT
GCGTTTGGCCTCAAGCAGTGGGGTGCTGCTTTGCGAGCTGCCGAGCAAGG
TGTAGACGTTGGTGCTGTGCTTTTGCTTCATTGA
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