Gvermi12834.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12834.t1
Unique NameGvermi12834.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length518
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1735561..1737114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9478.XP_008055439.1
Preferred namePOLM
PFAMsDNA_pol_B_palm,DNA_pol_B_thumb,DNA_pol_lambd_f,HHH_8
Max annot lvl33208|Metazoa
KEGG koko:K00977,ko:K03513
KEGG Pathwayko03450,ko04640,map03450,map04640
GOsGO:0000726,GO:0001775,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002521,GO:0002566,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016445,GO:0016446,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042113,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045321,GO:0046483,GO:0046649,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0140097,GO:1901360,GO:1901362,GO:1901576
Evalue1.32e-29
EggNOG OGsCOG1796@1|root,KOG2534@2759|Eukaryota,38C9S@33154|Opisthokonta,3BE7U@33208|Metazoa,3CVRE@33213|Bilateria,47ZSY@7711|Chordata,48WVW@7742|Vertebrata,3JDUR@40674|Mammalia,35DCQ@314146|Euarchontoglires,4MCHE@9443|Primates
EC2.7.7.31,2.7.7.7
DescriptionDNA polymerase X family
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12834Gvermi12834Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1735561..1737309 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12834.t1.stop1Gvermi12834.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1735561..1735563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12834.t1.CDS1Gvermi12834.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1735561..1737114 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12834.t1.exon1Gvermi12834.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1735561..1737114 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12834.t1.start1Gvermi12834.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1737112..1737114 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12834.t1Gvermi12834.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1735561..1737114 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12834.t1 ID=Gvermi12834.t1|Name=Gvermi12834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=518bp
LRNAGARVLDIEEPQHLLTFLKSPELIVVTDDKEKAQSVVKDKVNHAGTL
TYVSKEWATKMLTEQQWRPETQYVLECPEHANNKKGMDAQSIAFPESDET
AVEITHCQARTSEAAPVRSEMTPVWCRQRIDENSELTKKKQFLASLPKFL
CERCTITPAILKPPNDKICKVLELIAKKRRLEQAGGSEESADIRGRAYQR
ASAALKCVPFKLRTVQDADALYSLGPRVLAVVQEYLTAGVVKEAQLMQTD
ERLKALSKFQSVYGVGYVKARTFYDELAIRSMKELVESETQSDDGKRGPV
VRYLRHVEQLQNLCWTDAVAFKDLVHEIANSGNENDLHLRFQLCGGFRRG
ENRGHDVDILYCRHDKYSKDCSSVLKELVERLEDKGLVVEILKESSDVNG
WNEVHYQPRASSAVFAYAHDVLHAIGTYKGQVFRLDLVGVRDAREFCFAT
IAWSGSTAFQRDLRWWCEQHRGWTFNEHGVFDRKTGERMQLSPEPRSEMD
VFAALGLTYRAPFERSC*
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spliced messenger RNA

>Gvermi12834.t1 ID=Gvermi12834.t1|Name=Gvermi12834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at ScGOVlb_425:1735561..1737114- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGAGGAACGCCGGTGCAAGAGTGCTGGACATTGAAGAGCCCCAACACCT
TTTAACTTTCTTAAAGAGTCCAGAGCTCATTGTTGTGACGGATGACAAGG
AAAAGGCCCAATCCGTCGTAAAAGACAAAGTAAATCATGCGGGCACCCTG
ACCTACGTGTCGAAAGAGTGGGCAACCAAAATGCTGACTGAACAACAGTG
GCGGCCAGAGACGCAATACGTTTTAGAATGCCCTGAGCATGCAAACAACA
AAAAAGGCATGGACGCACAATCCATCGCATTTCCTGAAAGTGATGAGACT
GCCGTAGAAATCACGCACTGTCAAGCACGCACGTCAGAGGCTGCACCGGT
AAGATCAGAGATGACACCAGTGTGGTGTCGCCAGCGTATCGACGAAAACA
GTGAGCTGACAAAGAAGAAACAATTTCTGGCGAGCCTTCCGAAGTTTTTA
TGTGAACGATGCACAATAACGCCAGCAATACTGAAGCCGCCCAATGATAA
AATCTGTAAAGTGCTGGAGCTTATCGCCAAGAAAAGGAGGCTGGAGCAGG
CTGGTGGATCCGAGGAGTCTGCAGACATTCGCGGTAGAGCATATCAGAGA
GCTAGTGCAGCGTTGAAGTGCGTGCCCTTCAAACTGCGGACCGTGCAAGA
TGCAGACGCTTTGTATTCGCTCGGGCCAAGAGTTCTAGCTGTCGTGCAAG
AGTACCTGACGGCCGGAGTGGTGAAAGAAGCGCAATTGATGCAAACAGAT
GAAAGATTAAAGGCGCTGTCAAAATTTCAGAGCGTGTATGGCGTAGGGTA
CGTAAAGGCGAGAACGTTTTACGACGAGTTGGCGATCAGAAGCATGAAAG
AGCTTGTTGAAAGCGAGACTCAAAGTGACGATGGAAAACGCGGGCCTGTT
GTGCGCTACTTGAGGCACGTCGAACAGCTTCAAAACTTGTGTTGGACAGA
TGCGGTGGCATTCAAAGATTTGGTGCATGAGATTGCAAACAGTGGAAACG
AGAATGATTTGCACCTTCGCTTCCAACTGTGCGGTGGATTCAGACGCGGA
GAGAACAGAGGACATGATGTAGACATTCTTTACTGTCGACATGACAAGTA
TTCAAAAGATTGCAGTTCCGTGCTCAAAGAGCTTGTTGAAAGGCTTGAAG
ACAAGGGGCTAGTTGTGGAGATACTGAAGGAAAGCAGTGATGTTAACGGC
TGGAATGAAGTGCATTACCAGCCGAGAGCGTCGTCAGCAGTGTTCGCATA
CGCGCACGACGTACTTCATGCCATAGGCACGTACAAGGGTCAGGTGTTCC
GGCTGGACTTGGTTGGGGTGCGAGACGCGCGCGAGTTCTGTTTCGCAACG
ATCGCATGGTCAGGGTCAACGGCGTTTCAACGCGATCTGAGGTGGTGGTG
TGAGCAACACAGAGGGTGGACGTTCAACGAGCACGGGGTGTTTGACCGCA
AAACCGGGGAGCGCATGCAGCTGAGTCCGGAGCCGCGGAGTGAAATGGAT
GTGTTCGCGGCGTTGGGGCTGACGTATCGGGCGCCGTTCGAGCGAAGTTG
CTAG
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protein sequence of Gvermi12834.t1

>Gvermi12834.t1 ID=Gvermi12834.t1|Name=Gvermi12834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=518bp
LRNAGARVLDIEEPQHLLTFLKSPELIVVTDDKEKAQSVVKDKVNHAGTL
TYVSKEWATKMLTEQQWRPETQYVLECPEHANNKKGMDAQSIAFPESDET
AVEITHCQARTSEAAPVRSEMTPVWCRQRIDENSELTKKKQFLASLPKFL
CERCTITPAILKPPNDKICKVLELIAKKRRLEQAGGSEESADIRGRAYQR
ASAALKCVPFKLRTVQDADALYSLGPRVLAVVQEYLTAGVVKEAQLMQTD
ERLKALSKFQSVYGVGYVKARTFYDELAIRSMKELVESETQSDDGKRGPV
VRYLRHVEQLQNLCWTDAVAFKDLVHEIANSGNENDLHLRFQLCGGFRRG
ENRGHDVDILYCRHDKYSKDCSSVLKELVERLEDKGLVVEILKESSDVNG
WNEVHYQPRASSAVFAYAHDVLHAIGTYKGQVFRLDLVGVRDAREFCFAT
IAWSGSTAFQRDLRWWCEQHRGWTFNEHGVFDRKTGERMQLSPEPRSEMD
VFAALGLTYRAPFERSC*
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mRNA from alignment at ScGOVlb_425:1735561..1737114-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12834.t1 ID=Gvermi12834.t1|Name=Gvermi12834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at ScGOVlb_425:1735561..1737114- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGAGGAACGCCGGTGCAAGAGTGCTGGACATTGAAGAGCCCCAACACCT
TTTAACTTTCTTAAAGAGTCCAGAGCTCATTGTTGTGACGGATGACAAGG
AAAAGGCCCAATCCGTCGTAAAAGACAAAGTAAATCATGCGGGCACCCTG
ACCTACGTGTCGAAAGAGTGGGCAACCAAAATGCTGACTGAACAACAGTG
GCGGCCAGAGACGCAATACGTTTTAGAATGCCCTGAGCATGCAAACAACA
AAAAAGGCATGGACGCACAATCCATCGCATTTCCTGAAAGTGATGAGACT
GCCGTAGAAATCACGCACTGTCAAGCACGCACGTCAGAGGCTGCACCGGT
AAGATCAGAGATGACACCAGTGTGGTGTCGCCAGCGTATCGACGAAAACA
GTGAGCTGACAAAGAAGAAACAATTTCTGGCGAGCCTTCCGAAGTTTTTA
TGTGAACGATGCACAATAACGCCAGCAATACTGAAGCCGCCCAATGATAA
AATCTGTAAAGTGCTGGAGCTTATCGCCAAGAAAAGGAGGCTGGAGCAGG
CTGGTGGATCCGAGGAGTCTGCAGACATTCGCGGTAGAGCATATCAGAGA
GCTAGTGCAGCGTTGAAGTGCGTGCCCTTCAAACTGCGGACCGTGCAAGA
TGCAGACGCTTTGTATTCGCTCGGGCCAAGAGTTCTAGCTGTCGTGCAAG
AGTACCTGACGGCCGGAGTGGTGAAAGAAGCGCAATTGATGCAAACAGAT
GAAAGATTAAAGGCGCTGTCAAAATTTCAGAGCGTGTATGGCGTAGGGTA
CGTAAAGGCGAGAACGTTTTACGACGAGTTGGCGATCAGAAGCATGAAAG
AGCTTGTTGAAAGCGAGACTCAAAGTGACGATGGAAAACGCGGGCCTGTT
GTGCGCTACTTGAGGCACGTCGAACAGCTTCAAAACTTGTGTTGGACAGA
TGCGGTGGCATTCAAAGATTTGGTGCATGAGATTGCAAACAGTGGAAACG
AGAATGATTTGCACCTTCGCTTCCAACTGTGCGGTGGATTCAGACGCGGA
GAGAACAGAGGACATGATGTAGACATTCTTTACTGTCGACATGACAAGTA
TTCAAAAGATTGCAGTTCCGTGCTCAAAGAGCTTGTTGAAAGGCTTGAAG
ACAAGGGGCTAGTTGTGGAGATACTGAAGGAAAGCAGTGATGTTAACGGC
TGGAATGAAGTGCATTACCAGCCGAGAGCGTCGTCAGCAGTGTTCGCATA
CGCGCACGACGTACTTCATGCCATAGGCACGTACAAGGGTCAGGTGTTCC
GGCTGGACTTGGTTGGGGTGCGAGACGCGCGCGAGTTCTGTTTCGCAACG
ATCGCATGGTCAGGGTCAACGGCGTTTCAACGCGATCTGAGGTGGTGGTG
TGAGCAACACAGAGGGTGGACGTTCAACGAGCACGGGGTGTTTGACCGCA
AAACCGGGGAGCGCATGCAGCTGAGTCCGGAGCCGCGGAGTGAAATGGAT
GTGTTCGCGGCGTTGGGGCTGACGTATCGGGCGCCGTTCGAGCGAAGTTG
CTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1735561..1737114-

>Gvermi12834.t1 ID=Gvermi12834.t1|Name=Gvermi12834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1554bp|location=Sequence derived from alignment at ScGOVlb_425:1735561..1737114- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGAGGAACGCCGGTGCAAGAGTGCTGGACATTGAAGAGCCCCAACACCT
TTTAACTTTCTTAAAGAGTCCAGAGCTCATTGTTGTGACGGATGACAAGG
AAAAGGCCCAATCCGTCGTAAAAGACAAAGTAAATCATGCGGGCACCCTG
ACCTACGTGTCGAAAGAGTGGGCAACCAAAATGCTGACTGAACAACAGTG
GCGGCCAGAGACGCAATACGTTTTAGAATGCCCTGAGCATGCAAACAACA
AAAAAGGCATGGACGCACAATCCATCGCATTTCCTGAAAGTGATGAGACT
GCCGTAGAAATCACGCACTGTCAAGCACGCACGTCAGAGGCTGCACCGGT
AAGATCAGAGATGACACCAGTGTGGTGTCGCCAGCGTATCGACGAAAACA
GTGAGCTGACAAAGAAGAAACAATTTCTGGCGAGCCTTCCGAAGTTTTTA
TGTGAACGATGCACAATAACGCCAGCAATACTGAAGCCGCCCAATGATAA
AATCTGTAAAGTGCTGGAGCTTATCGCCAAGAAAAGGAGGCTGGAGCAGG
CTGGTGGATCCGAGGAGTCTGCAGACATTCGCGGTAGAGCATATCAGAGA
GCTAGTGCAGCGTTGAAGTGCGTGCCCTTCAAACTGCGGACCGTGCAAGA
TGCAGACGCTTTGTATTCGCTCGGGCCAAGAGTTCTAGCTGTCGTGCAAG
AGTACCTGACGGCCGGAGTGGTGAAAGAAGCGCAATTGATGCAAACAGAT
GAAAGATTAAAGGCGCTGTCAAAATTTCAGAGCGTGTATGGCGTAGGGTA
CGTAAAGGCGAGAACGTTTTACGACGAGTTGGCGATCAGAAGCATGAAAG
AGCTTGTTGAAAGCGAGACTCAAAGTGACGATGGAAAACGCGGGCCTGTT
GTGCGCTACTTGAGGCACGTCGAACAGCTTCAAAACTTGTGTTGGACAGA
TGCGGTGGCATTCAAAGATTTGGTGCATGAGATTGCAAACAGTGGAAACG
AGAATGATTTGCACCTTCGCTTCCAACTGTGCGGTGGATTCAGACGCGGA
GAGAACAGAGGACATGATGTAGACATTCTTTACTGTCGACATGACAAGTA
TTCAAAAGATTGCAGTTCCGTGCTCAAAGAGCTTGTTGAAAGGCTTGAAG
ACAAGGGGCTAGTTGTGGAGATACTGAAGGAAAGCAGTGATGTTAACGGC
TGGAATGAAGTGCATTACCAGCCGAGAGCGTCGTCAGCAGTGTTCGCATA
CGCGCACGACGTACTTCATGCCATAGGCACGTACAAGGGTCAGGTGTTCC
GGCTGGACTTGGTTGGGGTGCGAGACGCGCGCGAGTTCTGTTTCGCAACG
ATCGCATGGTCAGGGTCAACGGCGTTTCAACGCGATCTGAGGTGGTGGTG
TGAGCAACACAGAGGGTGGACGTTCAACGAGCACGGGGTGTTTGACCGCA
AAACCGGGGAGCGCATGCAGCTGAGTCCGGAGCCGCGGAGTGAAATGGAT
GTGTTCGCGGCGTTGGGGCTGACGTATCGGGCGCCGTTCGAGCGAAGTTG
CTAG
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