Gvermi12828.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12828.t1
Unique Name	Gvermi12828.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	436

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1714773..1716080 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703958.1
Preferred name	srk1
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08286,ko:K08794
KEGG Pathway	ko04921,ko04925,map04921,map04925
GOs	GO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue	3.82e-135
EggNOG OGs	KOG0032@1\|root,KOG0032@2759\|Eukaryota
EC	2.7.11.17
Description	protein serine/threonine kinase activity
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12828	Gvermi12828	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1714773..1716080 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12828.t1.start1	Gvermi12828.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1714773..1714775 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12828.t1.CDS1	Gvermi12828.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1714773..1716080 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12828.t1.exon1	Gvermi12828.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1714773..1716080 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12828.t1.stop1	Gvermi12828.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1716078..1716080 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12828.t1	Gvermi12828.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1714773..1716080 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1714773..1716080+
coding sequence from alignment at ScGOVlb_425:1714773..1716080+

mRNA sequence

>Gvermi12828.t1 ID=Gvermi12828.t1|Name=Gvermi12828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=436bp
MESPASVSQVEVRRATPVNMCGWLFKEGKRFRSRYKRFLVLQHGVLSNHH
NEMSPPTWVVRLADCPLVAGPRNRELILHFPQRRISFFADSDSSFDQWLH
AVKSSTNCTVNDFYNVGQLLGEGAFAQVKLATHKQSNEKVAIKVIKKKGY
DPKEMEFIMREVDIMKSVSHPNVVNTIDIFDSPSQLHIVLEYMQGGELFD
IIAEAGSFSEQQAAQVTRDVIKGMKYLHMHEIVHRDIKPENVLCKAKSWP
LQVKIADFGLANFSKDGEINEQENNMIGTPGYVAPEVIKREKYGTAVDMW
AIGVLLYIMLSGKMPFYGRDDQACLRMTASGKYSMPPREWSNISDDAKSL
VKGLLQLNPDKRLTANAALQHKWLADPSAASASPINNDLSGIHSSRRKFR
KAVMATMTVGRINNLALSAAAAAAAASAAKTPTSA*

spliced messenger RNA

>Gvermi12828.t1 ID=Gvermi12828.t1|Name=Gvermi12828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1308bp|location=Sequence derived from alignment at ScGOVlb_425:1714773..1716080+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGTCCTGCTTCCGTGTCCCAGGTCGAGGTGCGACGTGCGACCCC
CGTCAACATGTGCGGTTGGCTGTTCAAGGAAGGAAAGCGTTTTCGTTCGC
GGTACAAGCGCTTTCTCGTCCTGCAGCATGGCGTGCTTTCCAACCATCAT
AACGAAATGTCTCCGCCCACCTGGGTCGTCCGCCTTGCCGACTGCCCCCT
TGTCGCTGGCCCGCGCAACCGAGAGCTTATCCTACACTTCCCACAGCGCC
GCATTTCCTTCTTTGCTGACAGCGACTCGTCCTTTGACCAGTGGTTGCAT
GCCGTCAAGAGTTCTACTAATTGCACCGTCAATGACTTTTACAACGTGGG
CCAACTGCTGGGAGAAGGTGCTTTTGCCCAGGTCAAGCTTGCCACGCACA
AGCAGTCCAACGAGAAAGTCGCCATCAAGGTGATCAAAAAGAAGGGCTAC
GATCCGAAGGAAATGGAATTCATCATGCGCGAGGTCGATATCATGAAGAG
CGTCTCTCACCCCAACGTCGTCAACACCATTGACATATTCGACTCCCCCT
CCCAGCTGCATATCGTGCTCGAGTACATGCAGGGCGGCGAACTCTTCGAT
ATCATCGCCGAAGCCGGTTCATTCTCGGAACAGCAGGCTGCCCAAGTTAC
ACGTGATGTCATCAAGGGCATGAAATATCTGCACATGCACGAAATTGTTC
ATCGTGATATCAAGCCGGAAAACGTTCTGTGCAAGGCCAAGAGCTGGCCC
CTGCAGGTCAAGATAGCAGACTTTGGTCTTGCAAACTTCTCCAAGGATGG
TGAGATCAACGAACAGGAAAACAATATGATTGGCACCCCAGGATACGTTG
CCCCCGAAGTTATCAAGCGTGAAAAATATGGAACTGCTGTCGATATGTGG
GCCATTGGCGTTCTACTCTACATCATGCTCAGTGGCAAGATGCCGTTCTA
CGGAAGAGACGACCAAGCCTGTCTCAGGATGACTGCGAGTGGCAAGTACA
GCATGCCGCCGAGGGAATGGTCTAATATTAGTGATGATGCCAAATCGCTT
GTCAAGGGATTGTTGCAACTGAACCCTGACAAACGTCTTACCGCTAATGC
TGCCTTGCAACACAAGTGGTTGGCTGACCCATCTGCTGCTAGCGCTTCGC
CTATCAACAACGATCTCAGTGGTATCCATTCCAGTCGCAGAAAGTTCAGG
AAGGCGGTTATGGCGACGATGACCGTTGGGAGGATCAACAATCTTGCCTT
AAGCGCTGCTGCAGCCGCCGCTGCAGCCTCTGCCGCGAAGACACCCACTT
CCGCGTAG

protein sequence of Gvermi12828.t1

>Gvermi12828.t1 ID=Gvermi12828.t1|Name=Gvermi12828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=436bp
MESPASVSQVEVRRATPVNMCGWLFKEGKRFRSRYKRFLVLQHGVLSNHH
NEMSPPTWVVRLADCPLVAGPRNRELILHFPQRRISFFADSDSSFDQWLH
AVKSSTNCTVNDFYNVGQLLGEGAFAQVKLATHKQSNEKVAIKVIKKKGY
DPKEMEFIMREVDIMKSVSHPNVVNTIDIFDSPSQLHIVLEYMQGGELFD
IIAEAGSFSEQQAAQVTRDVIKGMKYLHMHEIVHRDIKPENVLCKAKSWP
LQVKIADFGLANFSKDGEINEQENNMIGTPGYVAPEVIKREKYGTAVDMW
AIGVLLYIMLSGKMPFYGRDDQACLRMTASGKYSMPPREWSNISDDAKSL
VKGLLQLNPDKRLTANAALQHKWLADPSAASASPINNDLSGIHSSRRKFR
KAVMATMTVGRINNLALSAAAAAAAASAAKTPTSA*

mRNA from alignment at ScGOVlb_425:1714773..1716080+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12828.t1 ID=Gvermi12828.t1|Name=Gvermi12828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1308bp|location=Sequence derived from alignment at ScGOVlb_425:1714773..1716080+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGAGTCCTGCTTCCGTGTCCCAGGTCGAGGTGCGACGTGCGACCCC
CGTCAACATGTGCGGTTGGCTGTTCAAGGAAGGAAAGCGTTTTCGTTCGC
GGTACAAGCGCTTTCTCGTCCTGCAGCATGGCGTGCTTTCCAACCATCAT
AACGAAATGTCTCCGCCCACCTGGGTCGTCCGCCTTGCCGACTGCCCCCT
TGTCGCTGGCCCGCGCAACCGAGAGCTTATCCTACACTTCCCACAGCGCC
GCATTTCCTTCTTTGCTGACAGCGACTCGTCCTTTGACCAGTGGTTGCAT
GCCGTCAAGAGTTCTACTAATTGCACCGTCAATGACTTTTACAACGTGGG
CCAACTGCTGGGAGAAGGTGCTTTTGCCCAGGTCAAGCTTGCCACGCACA
AGCAGTCCAACGAGAAAGTCGCCATCAAGGTGATCAAAAAGAAGGGCTAC
GATCCGAAGGAAATGGAATTCATCATGCGCGAGGTCGATATCATGAAGAG
CGTCTCTCACCCCAACGTCGTCAACACCATTGACATATTCGACTCCCCCT
CCCAGCTGCATATCGTGCTCGAGTACATGCAGGGCGGCGAACTCTTCGAT
ATCATCGCCGAAGCCGGTTCATTCTCGGAACAGCAGGCTGCCCAAGTTAC
ACGTGATGTCATCAAGGGCATGAAATATCTGCACATGCACGAAATTGTTC
ATCGTGATATCAAGCCGGAAAACGTTCTGTGCAAGGCCAAGAGCTGGCCC
CTGCAGGTCAAGATAGCAGACTTTGGTCTTGCAAACTTCTCCAAGGATGG
TGAGATCAACGAACAGGAAAACAATATGATTGGCACCCCAGGATACGTTG
CCCCCGAAGTTATCAAGCGTGAAAAATATGGAACTGCTGTCGATATGTGG
GCCATTGGCGTTCTACTCTACATCATGCTCAGTGGCAAGATGCCGTTCTA
CGGAAGAGACGACCAAGCCTGTCTCAGGATGACTGCGAGTGGCAAGTACA
GCATGCCGCCGAGGGAATGGTCTAATATTAGTGATGATGCCAAATCGCTT
GTCAAGGGATTGTTGCAACTGAACCCTGACAAACGTCTTACCGCTAATGC
TGCCTTGCAACACAAGTGGTTGGCTGACCCATCTGCTGCTAGCGCTTCGC
CTATCAACAACGATCTCAGTGGTATCCATTCCAGTCGCAGAAAGTTCAGG
AAGGCGGTTATGGCGACGATGACCGTTGGGAGGATCAACAATCTTGCCTT
AAGCGCTGCTGCAGCCGCCGCTGCAGCCTCTGCCGCGAAGACACCCACTT
CCGCGTAG

Coding sequence (CDS) from alignment at ScGOVlb_425:1714773..1716080+

>Gvermi12828.t1 ID=Gvermi12828.t1|Name=Gvermi12828.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1308bp|location=Sequence derived from alignment at ScGOVlb_425:1714773..1716080+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGAGTCCTGCTTCCGTGTCCCAGGTCGAGGTGCGACGTGCGACCCC
CGTCAACATGTGCGGTTGGCTGTTCAAGGAAGGAAAGCGTTTTCGTTCGC
GGTACAAGCGCTTTCTCGTCCTGCAGCATGGCGTGCTTTCCAACCATCAT
AACGAAATGTCTCCGCCCACCTGGGTCGTCCGCCTTGCCGACTGCCCCCT
TGTCGCTGGCCCGCGCAACCGAGAGCTTATCCTACACTTCCCACAGCGCC
GCATTTCCTTCTTTGCTGACAGCGACTCGTCCTTTGACCAGTGGTTGCAT
GCCGTCAAGAGTTCTACTAATTGCACCGTCAATGACTTTTACAACGTGGG
CCAACTGCTGGGAGAAGGTGCTTTTGCCCAGGTCAAGCTTGCCACGCACA
AGCAGTCCAACGAGAAAGTCGCCATCAAGGTGATCAAAAAGAAGGGCTAC
GATCCGAAGGAAATGGAATTCATCATGCGCGAGGTCGATATCATGAAGAG
CGTCTCTCACCCCAACGTCGTCAACACCATTGACATATTCGACTCCCCCT
CCCAGCTGCATATCGTGCTCGAGTACATGCAGGGCGGCGAACTCTTCGAT
ATCATCGCCGAAGCCGGTTCATTCTCGGAACAGCAGGCTGCCCAAGTTAC
ACGTGATGTCATCAAGGGCATGAAATATCTGCACATGCACGAAATTGTTC
ATCGTGATATCAAGCCGGAAAACGTTCTGTGCAAGGCCAAGAGCTGGCCC
CTGCAGGTCAAGATAGCAGACTTTGGTCTTGCAAACTTCTCCAAGGATGG
TGAGATCAACGAACAGGAAAACAATATGATTGGCACCCCAGGATACGTTG
CCCCCGAAGTTATCAAGCGTGAAAAATATGGAACTGCTGTCGATATGTGG
GCCATTGGCGTTCTACTCTACATCATGCTCAGTGGCAAGATGCCGTTCTA
CGGAAGAGACGACCAAGCCTGTCTCAGGATGACTGCGAGTGGCAAGTACA
GCATGCCGCCGAGGGAATGGTCTAATATTAGTGATGATGCCAAATCGCTT
GTCAAGGGATTGTTGCAACTGAACCCTGACAAACGTCTTACCGCTAATGC
TGCCTTGCAACACAAGTGGTTGGCTGACCCATCTGCTGCTAGCGCTTCGC
CTATCAACAACGATCTCAGTGGTATCCATTCCAGTCGCAGAAAGTTCAGG
AAGGCGGTTATGGCGACGATGACCGTTGGGAGGATCAACAATCTTGCCTT
AAGCGCTGCTGCAGCCGCCGCTGCAGCCTCTGCCGCGAAGACACCCACTT
CCGCGTAG