Gvermi12825.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12825.t1
Unique NameGvermi12825.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1707676..1708598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708429.1
Preferred nameDNAJC28
PFAMsDUF1992,DnaJ
Max annot lvl2759|Eukaryota
KEGG koko:K03457,ko:K19373
KEGG TC2.A.39
GOsGO:0000301,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005886,GO:0006139,GO:0006206,GO:0006725,GO:0006807,GO:0006810,GO:0006890,GO:0006891,GO:0006996,GO:0007030,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009112,GO:0009526,GO:0009536,GO:0009987,GO:0010256,GO:0012505,GO:0015205,GO:0015851,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0018130,GO:0019438,GO:0019856,GO:0022607,GO:0022857,GO:0031967,GO:0031975,GO:0032991,GO:0034622,GO:0034641,GO:0034654,GO:0043094,GO:0043100,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044431,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046112,GO:0046483,GO:0048193,GO:0048213,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0065003,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072527,GO:0072528,GO:0099023,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue3.11e-28
EggNOG OGsKOG0568@1|root,KOG0568@2759|Eukaryota
DescriptionGolgi vesicle prefusion complex stabilization
COG categoryJ
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12825Gvermi12825Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1707676..1708598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12825.t1Gvermi12825.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1707676..1708598 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12825.t1.stop1Gvermi12825.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1707676..1707678 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12825.t1.CDS1Gvermi12825.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1707676..1708436 -
Gvermi12825.t1.CDS2Gvermi12825.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1708502..1708598 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12825.t1.exon1Gvermi12825.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1707676..1708436 -
Gvermi12825.t1.exon2Gvermi12825.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1708502..1708598 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12825.t1.intron1Gvermi12825.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1708437..1708501 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12825.t1.start1Gvermi12825.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1708596..1708598 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12825.t1 ID=Gvermi12825.t1|Name=Gvermi12825.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=286bp
MSFLRATLLGRIAPALHALSTRSFTERAAGPGGLFRSSTVVNPSKEQASA
SRKRLRRARTALDHTRLPPELQNEHDHHENQFESEEDIRDFVEARIQESM
RTGQFDNLKNKGRPLPHQPSSTHEYAMRIMRDNGLRPHWLQLMHDIDSEK
RQLRNTLSHAWHTHMPHAPHRWALAVKIMELRIESVNKRVDTFNLVRPMS
VSHLFRLRLRINEEIERAMKSKLPTESEQYRMSGQPTASKEKQRADKSEP
RYSWQLFARFVRATEVREYKRPTWGRRKSDDESEA*
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spliced messenger RNA

>Gvermi12825.t1 ID=Gvermi12825.t1|Name=Gvermi12825.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=858bp|location=Sequence derived from alignment at ScGOVlb_425:1707676..1708598- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTTTCTCCGCGCAACACTGCTCGGGCGAATTGCTCCGGCCTTACA
CGCCCTCTCCACCCGTTCGTTCACTGAGCGAGCGGCAGGACCAGGCGGGC
TTTTCCGCAGTAGCACAGTAGTCAACCCGTCAAAGGAGCAGGCAAGTGCG
TCGCGAAAGCGTCTCCGCCGCGCTCGGACGGCCCTTGACCACACGCGCCT
TCCGCCAGAACTGCAGAACGAGCATGACCATCACGAGAATCAGTTCGAGT
CTGAAGAGGACATTCGTGACTTCGTGGAGGCTAGAATACAAGAGTCCATG
CGCACCGGTCAGTTCGACAACCTTAAGAACAAAGGCAGACCGCTTCCGCA
TCAGCCATCCAGCACTCACGAGTACGCCATGAGAATAATGCGTGACAATG
GGCTGCGTCCTCACTGGTTGCAGCTCATGCATGACATTGACAGCGAAAAG
AGACAGCTTAGAAACACTCTCAGTCATGCCTGGCATACGCACATGCCACA
TGCTCCTCACCGCTGGGCGCTTGCTGTCAAAATTATGGAGTTGCGCATCG
AGTCGGTCAACAAACGCGTTGATACCTTCAACCTTGTTCGCCCGATGTCT
GTCTCGCATTTGTTCAGGCTTCGACTTCGCATAAATGAAGAGATTGAGCG
CGCTATGAAAAGCAAGTTGCCGACCGAGAGTGAGCAATATAGAATGTCAG
GACAACCAACAGCGAGCAAAGAGAAGCAAAGAGCTGATAAAAGTGAACCT
CGCTACTCCTGGCAGCTGTTTGCTCGCTTTGTAAGAGCAACAGAGGTGCG
AGAGTACAAGCGTCCTACATGGGGAAGAAGAAAGTCTGATGACGAAAGCG
AGGCATGA
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protein sequence of Gvermi12825.t1

>Gvermi12825.t1 ID=Gvermi12825.t1|Name=Gvermi12825.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=286bp
MSFLRATLLGRIAPALHALSTRSFTERAAGPGGLFRSSTVVNPSKEQASA
SRKRLRRARTALDHTRLPPELQNEHDHHENQFESEEDIRDFVEARIQESM
RTGQFDNLKNKGRPLPHQPSSTHEYAMRIMRDNGLRPHWLQLMHDIDSEK
RQLRNTLSHAWHTHMPHAPHRWALAVKIMELRIESVNKRVDTFNLVRPMS
VSHLFRLRLRINEEIERAMKSKLPTESEQYRMSGQPTASKEKQRADKSEP
RYSWQLFARFVRATEVREYKRPTWGRRKSDDESEA*
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mRNA from alignment at ScGOVlb_425:1707676..1708598-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12825.t1 ID=Gvermi12825.t1|Name=Gvermi12825.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=923bp|location=Sequence derived from alignment at ScGOVlb_425:1707676..1708598- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCTTTCTCCGCGCAACACTGCTCGGGCGAATTGCTCCGGCCTTACA
CGCCCTCTCCACCCGTTCGTTCACTGAGCGAGCGGCAGGACCAGGCGGTA
AGTTCCAGACCTGCTGATAGCTTGTTTCAGCATGTACTGACGCACAACTA
CTTCCTTGTCAGGGCTTTTCCGCAGTAGCACAGTAGTCAACCCGTCAAAG
GAGCAGGCAAGTGCGTCGCGAAAGCGTCTCCGCCGCGCTCGGACGGCCCT
TGACCACACGCGCCTTCCGCCAGAACTGCAGAACGAGCATGACCATCACG
AGAATCAGTTCGAGTCTGAAGAGGACATTCGTGACTTCGTGGAGGCTAGA
ATACAAGAGTCCATGCGCACCGGTCAGTTCGACAACCTTAAGAACAAAGG
CAGACCGCTTCCGCATCAGCCATCCAGCACTCACGAGTACGCCATGAGAA
TAATGCGTGACAATGGGCTGCGTCCTCACTGGTTGCAGCTCATGCATGAC
ATTGACAGCGAAAAGAGACAGCTTAGAAACACTCTCAGTCATGCCTGGCA
TACGCACATGCCACATGCTCCTCACCGCTGGGCGCTTGCTGTCAAAATTA
TGGAGTTGCGCATCGAGTCGGTCAACAAACGCGTTGATACCTTCAACCTT
GTTCGCCCGATGTCTGTCTCGCATTTGTTCAGGCTTCGACTTCGCATAAA
TGAAGAGATTGAGCGCGCTATGAAAAGCAAGTTGCCGACCGAGAGTGAGC
AATATAGAATGTCAGGACAACCAACAGCGAGCAAAGAGAAGCAAAGAGCT
GATAAAAGTGAACCTCGCTACTCCTGGCAGCTGTTTGCTCGCTTTGTAAG
AGCAACAGAGGTGCGAGAGTACAAGCGTCCTACATGGGGAAGAAGAAAGT
CTGATGACGAAAGCGAGGCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1707676..1708598-

>Gvermi12825.t1 ID=Gvermi12825.t1|Name=Gvermi12825.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=858bp|location=Sequence derived from alignment at ScGOVlb_425:1707676..1708598- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCTTTCTCCGCGCAACACTGCTCGGGCGAATTGCTCCGGCCTTACA
CGCCCTCTCCACCCGTTCGTTCACTGAGCGAGCGGCAGGACCAGGCGGGC
TTTTCCGCAGTAGCACAGTAGTCAACCCGTCAAAGGAGCAGGCAAGTGCG
TCGCGAAAGCGTCTCCGCCGCGCTCGGACGGCCCTTGACCACACGCGCCT
TCCGCCAGAACTGCAGAACGAGCATGACCATCACGAGAATCAGTTCGAGT
CTGAAGAGGACATTCGTGACTTCGTGGAGGCTAGAATACAAGAGTCCATG
CGCACCGGTCAGTTCGACAACCTTAAGAACAAAGGCAGACCGCTTCCGCA
TCAGCCATCCAGCACTCACGAGTACGCCATGAGAATAATGCGTGACAATG
GGCTGCGTCCTCACTGGTTGCAGCTCATGCATGACATTGACAGCGAAAAG
AGACAGCTTAGAAACACTCTCAGTCATGCCTGGCATACGCACATGCCACA
TGCTCCTCACCGCTGGGCGCTTGCTGTCAAAATTATGGAGTTGCGCATCG
AGTCGGTCAACAAACGCGTTGATACCTTCAACCTTGTTCGCCCGATGTCT
GTCTCGCATTTGTTCAGGCTTCGACTTCGCATAAATGAAGAGATTGAGCG
CGCTATGAAAAGCAAGTTGCCGACCGAGAGTGAGCAATATAGAATGTCAG
GACAACCAACAGCGAGCAAAGAGAAGCAAAGAGCTGATAAAAGTGAACCT
CGCTACTCCTGGCAGCTGTTTGCTCGCTTTGTAAGAGCAACAGAGGTGCG
AGAGTACAAGCGTCCTACATGGGGAAGAAGAAAGTCTGATGACGAAAGCG
AGGCATGA
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