Gvermi12820.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12820.t1
Unique NameGvermi12820.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length89
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1686012..1686375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12820Gvermi12820Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1686012..1686375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12820.t1Gvermi12820.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1686012..1686375 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12820.t1.start1Gvermi12820.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1686012..1686014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12820.t1.CDS1Gvermi12820.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1686012..1686122 +
Gvermi12820.t1.CDS2Gvermi12820.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1686220..1686375 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12820.t1.exon1Gvermi12820.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1686012..1686122 +
Gvermi12820.t1.exon2Gvermi12820.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1686220..1686375 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12820.t1.intron1Gvermi12820.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1686123..1686219 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12820.t1.stop1Gvermi12820.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1686373..1686375 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12820.t1 ID=Gvermi12820.t1|Name=Gvermi12820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=89bp
MVDTFSLDDQHLLSQLLGSTGDPRSSPSAELQHEKDQRRLLLILLSVFLV
AVLSMVFAWIRYGKEVIEALTAAESNQRQSRSYRHKRE*
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spliced messenger RNA

>Gvermi12820.t1 ID=Gvermi12820.t1|Name=Gvermi12820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=267bp|location=Sequence derived from alignment at ScGOVlb_425:1686012..1686375+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGACACTTTTTCTCTGGATGATCAGCATCTTCTTTCCCAACTTTT
GGGCAGTACAGGAGATCCGCGCTCATCACCGTCTGCTGAACTGCAGCACG
AAAAAGATCAGCGGCGATTACTTTTAATACTTCTTTCGGTCTTTCTCGTT
GCCGTTCTAAGCATGGTTTTTGCTTGGATCCGCTACGGCAAAGAGGTGAT
CGAGGCTTTAACAGCAGCGGAATCGAATCAAAGGCAGTCGAGAAGTTACA
GACACAAGCGCGAGTGA
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protein sequence of Gvermi12820.t1

>Gvermi12820.t1 ID=Gvermi12820.t1|Name=Gvermi12820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=89bp
MVDTFSLDDQHLLSQLLGSTGDPRSSPSAELQHEKDQRRLLLILLSVFLV
AVLSMVFAWIRYGKEVIEALTAAESNQRQSRSYRHKRE*
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mRNA from alignment at ScGOVlb_425:1686012..1686375+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12820.t1 ID=Gvermi12820.t1|Name=Gvermi12820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=364bp|location=Sequence derived from alignment at ScGOVlb_425:1686012..1686375+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGACACTTTTTCTCTGGATGATCAGCATCTTCTTTCCCAACTTTT
GGGCAGTACAGGAGATCCGCGCTCATCACCGTCTGCTGAACTGCAGCACG
AAAAAGATCAGGTGCGTTTCGACTGACTTTCCGTTTGAGACAGTGAATGT
TCTACGTAGAAATCTTTGTTCTAAACAAATCGCTCCGAAATTTCTTTCCG
ATGCGAAGCGGCGATTACTTTTAATACTTCTTTCGGTCTTTCTCGTTGCC
GTTCTAAGCATGGTTTTTGCTTGGATCCGCTACGGCAAAGAGGTGATCGA
GGCTTTAACAGCAGCGGAATCGAATCAAAGGCAGTCGAGAAGTTACAGAC
ACAAGCGCGAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1686012..1686375+

>Gvermi12820.t1 ID=Gvermi12820.t1|Name=Gvermi12820.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=267bp|location=Sequence derived from alignment at ScGOVlb_425:1686012..1686375+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGACACTTTTTCTCTGGATGATCAGCATCTTCTTTCCCAACTTTT
GGGCAGTACAGGAGATCCGCGCTCATCACCGTCTGCTGAACTGCAGCACG
AAAAAGATCAGCGGCGATTACTTTTAATACTTCTTTCGGTCTTTCTCGTT
GCCGTTCTAAGCATGGTTTTTGCTTGGATCCGCTACGGCAAAGAGGTGAT
CGAGGCTTTAACAGCAGCGGAATCGAATCAAAGGCAGTCGAGAAGTTACA
GACACAAGCGCGAGTGA
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