Gvermi12818.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12818.t1
Unique NameGvermi12818.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length184
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1683873..1684509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_12209T0
Preferred nameDNLZ
PFAMszf-DNL
Max annot lvl33154|Opisthokonta
KEGG koko:K17808
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0006457,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006986,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0009987,GO:0010033,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019866,GO:0030150,GO:0031090,GO:0031647,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035966,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0050821,GO:0050896,GO:0051082,GO:0051087,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0065007,GO:0065008,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0098796,GO:0098798,GO:0098800,GO:1990542
Evalue2.25e-14
EggNOG OGsKOG3277@1|root,KOG3277@2759|Eukaryota,3A8PK@33154|Opisthokonta
Descriptionprotein import into mitochondrial matrix
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12818Gvermi12818Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1683873..1684509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12818.t1Gvermi12818.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1683873..1684509 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12818.t1.start1Gvermi12818.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1683873..1683875 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12818.t1.CDS1Gvermi12818.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1683873..1684323 +
Gvermi12818.t1.CDS2Gvermi12818.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1684409..1684509 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12818.t1.exon1Gvermi12818.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1683873..1684323 +
Gvermi12818.t1.exon2Gvermi12818.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1684409..1684509 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12818.t1.intron1Gvermi12818.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1684324..1684408 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12818.t1.stop1Gvermi12818.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1684507..1684509 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12818.t1 ID=Gvermi12818.t1|Name=Gvermi12818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=184bp
MAYLFISPLLPKLTHRLNGRTRTSCKPKILVSAKSEKGLPNRLPSGKGDS
SARSEGKVGFVGSDTIGISFTCNANSCNQRITKTIKRKSYEKGTVLIQCP
SCNKHHVIADNMGMYAHLTGGRKNVEEIARDAGVNVTRVSSATFDLEKLV
STVIDGDNINENGTFRESENPGPRDQEPTEENN*
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spliced messenger RNA

>Gvermi12818.t1 ID=Gvermi12818.t1|Name=Gvermi12818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=552bp|location=Sequence derived from alignment at ScGOVlb_425:1683873..1684509+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTACTTGTTCATCTCTCCGTTACTTCCAAAATTAACTCACCGTCT
CAATGGAAGAACGAGGACAAGTTGCAAACCAAAAATACTAGTCTCTGCGA
AAAGCGAAAAGGGACTACCAAATCGTTTGCCATCTGGGAAAGGGGATTCA
AGCGCTCGAAGTGAAGGAAAGGTAGGATTTGTTGGTTCGGACACGATTGG
CATATCTTTCACGTGCAACGCAAATTCATGCAACCAACGCATAACAAAGA
CCATCAAAAGAAAGAGTTATGAGAAAGGGACTGTGCTCATTCAGTGTCCA
TCATGCAACAAACATCACGTCATAGCAGATAACATGGGCATGTATGCTCA
TTTAACGGGAGGGAGAAAAAACGTTGAAGAAATTGCAAGAGACGCCGGGG
TGAATGTAACACGAGTCAGTTCTGCCACATTTGATTTGGAAAAGCTTGTC
TCAACCGTTATTGATGGCGATAATATCAATGAAAACGGAACTTTTCGTGA
AAGCGAAAACCCAGGACCGAGAGATCAAGAGCCAACGGAAGAAAACAATT
GA
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protein sequence of Gvermi12818.t1

>Gvermi12818.t1 ID=Gvermi12818.t1|Name=Gvermi12818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=184bp
MAYLFISPLLPKLTHRLNGRTRTSCKPKILVSAKSEKGLPNRLPSGKGDS
SARSEGKVGFVGSDTIGISFTCNANSCNQRITKTIKRKSYEKGTVLIQCP
SCNKHHVIADNMGMYAHLTGGRKNVEEIARDAGVNVTRVSSATFDLEKLV
STVIDGDNINENGTFRESENPGPRDQEPTEENN*
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mRNA from alignment at ScGOVlb_425:1683873..1684509+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12818.t1 ID=Gvermi12818.t1|Name=Gvermi12818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=637bp|location=Sequence derived from alignment at ScGOVlb_425:1683873..1684509+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTACTTGTTCATCTCTCCGTTACTTCCAAAATTAACTCACCGTCT
CAATGGAAGAACGAGGACAAGTTGCAAACCAAAAATACTAGTCTCTGCGA
AAAGCGAAAAGGGACTACCAAATCGTTTGCCATCTGGGAAAGGGGATTCA
AGCGCTCGAAGTGAAGGAAAGGTAGGATTTGTTGGTTCGGACACGATTGG
CATATCTTTCACGTGCAACGCAAATTCATGCAACCAACGCATAACAAAGA
CCATCAAAAGAAAGAGTTATGAGAAAGGGACTGTGCTCATTCAGTGTCCA
TCATGCAACAAACATCACGTCATAGCAGATAACATGGGCATGTATGCTCA
TTTAACGGGAGGGAGAAAAAACGTTGAAGAAATTGCAAGAGACGCCGGGG
TGAATGTAACACGAGTCAGTTCTGCCACATTTGATTTGGAAAAGCTTGTC
TGTAAGTTGGGTTCAAATCTAGATTCCTGATGCAGTTCATGTCTTTTGGA
ACATCTAACAGTTGTCTGCTAATGCTGGCGTTGCAGCAACCGTTATTGAT
GGCGATAATATCAATGAAAACGGAACTTTTCGTGAAAGCGAAAACCCAGG
ACCGAGAGATCAAGAGCCAACGGAAGAAAACAATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1683873..1684509+

>Gvermi12818.t1 ID=Gvermi12818.t1|Name=Gvermi12818.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=552bp|location=Sequence derived from alignment at ScGOVlb_425:1683873..1684509+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTACTTGTTCATCTCTCCGTTACTTCCAAAATTAACTCACCGTCT
CAATGGAAGAACGAGGACAAGTTGCAAACCAAAAATACTAGTCTCTGCGA
AAAGCGAAAAGGGACTACCAAATCGTTTGCCATCTGGGAAAGGGGATTCA
AGCGCTCGAAGTGAAGGAAAGGTAGGATTTGTTGGTTCGGACACGATTGG
CATATCTTTCACGTGCAACGCAAATTCATGCAACCAACGCATAACAAAGA
CCATCAAAAGAAAGAGTTATGAGAAAGGGACTGTGCTCATTCAGTGTCCA
TCATGCAACAAACATCACGTCATAGCAGATAACATGGGCATGTATGCTCA
TTTAACGGGAGGGAGAAAAAACGTTGAAGAAATTGCAAGAGACGCCGGGG
TGAATGTAACACGAGTCAGTTCTGCCACATTTGATTTGGAAAAGCTTGTC
TCAACCGTTATTGATGGCGATAATATCAATGAAAACGGAACTTTTCGTGA
AAGCGAAAACCCAGGACCGAGAGATCAAGAGCCAACGGAAGAAAACAATT
GA
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