Gvermi12815.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12815.t1
Unique Name	Gvermi12815.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	500

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1620145..1621644 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	913865.DOT_5908
PFAMs	Cu-oxidase,Cu-oxidase_2,Cu-oxidase_3
Max annot lvl	186801\|Clostridia
KEGG ko	ko:K06324
Evalue	5.68e-36
EggNOG OGs	COG0277@1\|root,COG2132@1\|root,COG0277@2\|Bacteria,COG2132@2\|Bacteria,1TQSU@1239\|Firmicutes,24CJP@186801\|Clostridia,260KE@186807\|Peptococcaceae
EC	1.16.3.3
Description	Multicopper oxidase
COG category	Q
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12815	Gvermi12815	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1620145..1621644 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12815.t1.start1	Gvermi12815.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1620145..1620147 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12815.t1.CDS1	Gvermi12815.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1620145..1621644 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12815.t1.exon1	Gvermi12815.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1620145..1621644 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12815.t1.stop1	Gvermi12815.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1621642..1621644 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12815.t1	Gvermi12815.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1620145..1621644 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1620145..1621644+
coding sequence from alignment at ScGOVlb_425:1620145..1621644+

mRNA sequence

>Gvermi12815.t1 ID=Gvermi12815.t1|Name=Gvermi12815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=500bp
MNRLSARLLLVVIALRFTCGNANPIPALRACISQFLPVYTPGNSNFHRLK
ALSFRNDFATPLAIVEPRNERHVSHVVKCAAQAQVRVCVRSGGHSLIGHS
LCKGLLLDLSNMRFVTFVSNNVANIQPGANMGEVLWHLHKRRRWMAAGVC
PTVGLAGYALGGGHGPYEGRLGLACDSMLSLRMVDRFGRVLVVSPSSRPL
LFWAMCGAGGAQFGIVTSFQWKTVPSQPFDRAVVFRFRWPAERGGELLQK
WQNYGEWNGDVWFRMEVYHAYRDKAVFGYGACYSVKNVADCLARLNQASF
FNTPGRSTTFISTVRNALDLHAFFGPEGGWGSYRAPNVYNALLQQRWKES
GQANGRTYQSSFLRKIHNNPPSKEFWQQYVDFCQTAGGKSSIPWVVCEMN
LFQNAINNKQNNAFAFRSANIITHYIVGGGSKDDRSFVYSWMKTHFQKYS
IGVYVNYPELQLPYYSKSYWAHHVDWLKQVKISYDPYNFFMNPQPIPTK*

spliced messenger RNA

>Gvermi12815.t1 ID=Gvermi12815.t1|Name=Gvermi12815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at ScGOVlb_425:1620145..1621644+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCGTTTGTCCGCCCGTCTTCTTCTTGTAGTCATTGCGTTACGGTT
CACTTGCGGCAATGCCAATCCAATTCCCGCTCTGCGAGCCTGCATTTCCC
AGTTTCTCCCAGTCTATACCCCCGGCAATTCAAACTTTCACCGCTTAAAG
GCGCTCTCGTTCCGCAACGATTTTGCCACTCCTCTTGCCATCGTCGAGCC
CCGAAACGAACGTCATGTTTCGCACGTTGTCAAATGCGCCGCCCAAGCCC
AAGTTCGAGTCTGTGTGCGCTCGGGTGGCCACTCACTTATTGGACACAGC
CTGTGCAAGGGTTTACTTCTCGACCTTTCCAACATGCGCTTCGTCACCTT
CGTCAGCAACAATGTTGCCAACATTCAGCCGGGCGCAAACATGGGTGAAG
TGCTGTGGCATTTGCACAAACGACGGCGCTGGATGGCTGCAGGGGTTTGT
CCCACGGTTGGATTAGCTGGTTATGCGCTCGGAGGAGGCCACGGCCCTTA
TGAGGGCCGACTGGGGCTTGCTTGTGATTCCATGCTATCGCTTCGCATGG
TGGATCGTTTTGGGCGAGTTCTGGTCGTTTCACCGTCGAGCAGACCATTA
CTTTTTTGGGCAATGTGCGGCGCTGGTGGCGCTCAATTTGGTATCGTCAC
TTCATTTCAGTGGAAAACCGTCCCGTCTCAGCCATTCGACAGAGCTGTAG
TGTTTCGCTTTCGCTGGCCCGCGGAGCGAGGCGGAGAGTTGTTACAAAAA
TGGCAGAATTACGGAGAGTGGAACGGAGATGTTTGGTTTAGAATGGAAGT
TTATCATGCCTATCGAGATAAAGCGGTGTTTGGCTATGGTGCCTGCTATA
GCGTGAAAAACGTCGCTGATTGCTTGGCGAGATTGAATCAAGCATCGTTC
TTCAACACTCCAGGACGCAGCACGACCTTTATTTCCACTGTGCGGAATGC
TCTCGATTTGCACGCCTTCTTCGGGCCTGAGGGTGGATGGGGAAGCTATC
GAGCACCAAACGTTTACAACGCTTTGCTTCAACAACGATGGAAGGAGAGT
GGACAGGCGAATGGACGAACCTATCAATCCAGCTTTCTGAGAAAAATACA
TAATAATCCGCCTTCAAAAGAGTTCTGGCAACAGTATGTAGACTTTTGCC
AAACAGCAGGAGGAAAAAGCAGTATTCCGTGGGTGGTTTGTGAAATGAAT
CTGTTCCAAAACGCAATTAATAACAAACAAAACAATGCATTTGCATTTCG
CTCAGCCAATATCATTACGCATTACATCGTCGGTGGTGGAAGCAAAGATG
ATAGAAGTTTTGTCTACAGCTGGATGAAAACCCATTTCCAGAAATATTCC
ATCGGTGTGTACGTTAATTATCCGGAGCTACAGCTTCCATACTACTCAAA
ATCGTACTGGGCGCATCACGTAGACTGGCTGAAGCAGGTGAAAATTTCGT
ATGATCCGTACAATTTCTTTATGAATCCGCAGCCTATACCGACCAAGTAA

protein sequence of Gvermi12815.t1

>Gvermi12815.t1 ID=Gvermi12815.t1|Name=Gvermi12815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=500bp
MNRLSARLLLVVIALRFTCGNANPIPALRACISQFLPVYTPGNSNFHRLK
ALSFRNDFATPLAIVEPRNERHVSHVVKCAAQAQVRVCVRSGGHSLIGHS
LCKGLLLDLSNMRFVTFVSNNVANIQPGANMGEVLWHLHKRRRWMAAGVC
PTVGLAGYALGGGHGPYEGRLGLACDSMLSLRMVDRFGRVLVVSPSSRPL
LFWAMCGAGGAQFGIVTSFQWKTVPSQPFDRAVVFRFRWPAERGGELLQK
WQNYGEWNGDVWFRMEVYHAYRDKAVFGYGACYSVKNVADCLARLNQASF
FNTPGRSTTFISTVRNALDLHAFFGPEGGWGSYRAPNVYNALLQQRWKES
GQANGRTYQSSFLRKIHNNPPSKEFWQQYVDFCQTAGGKSSIPWVVCEMN
LFQNAINNKQNNAFAFRSANIITHYIVGGGSKDDRSFVYSWMKTHFQKYS
IGVYVNYPELQLPYYSKSYWAHHVDWLKQVKISYDPYNFFMNPQPIPTK*

mRNA from alignment at ScGOVlb_425:1620145..1621644+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12815.t1 ID=Gvermi12815.t1|Name=Gvermi12815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at ScGOVlb_425:1620145..1621644+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCGTTTGTCCGCCCGTCTTCTTCTTGTAGTCATTGCGTTACGGTT
CACTTGCGGCAATGCCAATCCAATTCCCGCTCTGCGAGCCTGCATTTCCC
AGTTTCTCCCAGTCTATACCCCCGGCAATTCAAACTTTCACCGCTTAAAG
GCGCTCTCGTTCCGCAACGATTTTGCCACTCCTCTTGCCATCGTCGAGCC
CCGAAACGAACGTCATGTTTCGCACGTTGTCAAATGCGCCGCCCAAGCCC
AAGTTCGAGTCTGTGTGCGCTCGGGTGGCCACTCACTTATTGGACACAGC
CTGTGCAAGGGTTTACTTCTCGACCTTTCCAACATGCGCTTCGTCACCTT
CGTCAGCAACAATGTTGCCAACATTCAGCCGGGCGCAAACATGGGTGAAG
TGCTGTGGCATTTGCACAAACGACGGCGCTGGATGGCTGCAGGGGTTTGT
CCCACGGTTGGATTAGCTGGTTATGCGCTCGGAGGAGGCCACGGCCCTTA
TGAGGGCCGACTGGGGCTTGCTTGTGATTCCATGCTATCGCTTCGCATGG
TGGATCGTTTTGGGCGAGTTCTGGTCGTTTCACCGTCGAGCAGACCATTA
CTTTTTTGGGCAATGTGCGGCGCTGGTGGCGCTCAATTTGGTATCGTCAC
TTCATTTCAGTGGAAAACCGTCCCGTCTCAGCCATTCGACAGAGCTGTAG
TGTTTCGCTTTCGCTGGCCCGCGGAGCGAGGCGGAGAGTTGTTACAAAAA
TGGCAGAATTACGGAGAGTGGAACGGAGATGTTTGGTTTAGAATGGAAGT
TTATCATGCCTATCGAGATAAAGCGGTGTTTGGCTATGGTGCCTGCTATA
GCGTGAAAAACGTCGCTGATTGCTTGGCGAGATTGAATCAAGCATCGTTC
TTCAACACTCCAGGACGCAGCACGACCTTTATTTCCACTGTGCGGAATGC
TCTCGATTTGCACGCCTTCTTCGGGCCTGAGGGTGGATGGGGAAGCTATC
GAGCACCAAACGTTTACAACGCTTTGCTTCAACAACGATGGAAGGAGAGT
GGACAGGCGAATGGACGAACCTATCAATCCAGCTTTCTGAGAAAAATACA
TAATAATCCGCCTTCAAAAGAGTTCTGGCAACAGTATGTAGACTTTTGCC
AAACAGCAGGAGGAAAAAGCAGTATTCCGTGGGTGGTTTGTGAAATGAAT
CTGTTCCAAAACGCAATTAATAACAAACAAAACAATGCATTTGCATTTCG
CTCAGCCAATATCATTACGCATTACATCGTCGGTGGTGGAAGCAAAGATG
ATAGAAGTTTTGTCTACAGCTGGATGAAAACCCATTTCCAGAAATATTCC
ATCGGTGTGTACGTTAATTATCCGGAGCTACAGCTTCCATACTACTCAAA
ATCGTACTGGGCGCATCACGTAGACTGGCTGAAGCAGGTGAAAATTTCGT
ATGATCCGTACAATTTCTTTATGAATCCGCAGCCTATACCGACCAAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1620145..1621644+

>Gvermi12815.t1 ID=Gvermi12815.t1|Name=Gvermi12815.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1500bp|location=Sequence derived from alignment at ScGOVlb_425:1620145..1621644+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCGTTTGTCCGCCCGTCTTCTTCTTGTAGTCATTGCGTTACGGTT
CACTTGCGGCAATGCCAATCCAATTCCCGCTCTGCGAGCCTGCATTTCCC
AGTTTCTCCCAGTCTATACCCCCGGCAATTCAAACTTTCACCGCTTAAAG
GCGCTCTCGTTCCGCAACGATTTTGCCACTCCTCTTGCCATCGTCGAGCC
CCGAAACGAACGTCATGTTTCGCACGTTGTCAAATGCGCCGCCCAAGCCC
AAGTTCGAGTCTGTGTGCGCTCGGGTGGCCACTCACTTATTGGACACAGC
CTGTGCAAGGGTTTACTTCTCGACCTTTCCAACATGCGCTTCGTCACCTT
CGTCAGCAACAATGTTGCCAACATTCAGCCGGGCGCAAACATGGGTGAAG
TGCTGTGGCATTTGCACAAACGACGGCGCTGGATGGCTGCAGGGGTTTGT
CCCACGGTTGGATTAGCTGGTTATGCGCTCGGAGGAGGCCACGGCCCTTA
TGAGGGCCGACTGGGGCTTGCTTGTGATTCCATGCTATCGCTTCGCATGG
TGGATCGTTTTGGGCGAGTTCTGGTCGTTTCACCGTCGAGCAGACCATTA
CTTTTTTGGGCAATGTGCGGCGCTGGTGGCGCTCAATTTGGTATCGTCAC
TTCATTTCAGTGGAAAACCGTCCCGTCTCAGCCATTCGACAGAGCTGTAG
TGTTTCGCTTTCGCTGGCCCGCGGAGCGAGGCGGAGAGTTGTTACAAAAA
TGGCAGAATTACGGAGAGTGGAACGGAGATGTTTGGTTTAGAATGGAAGT
TTATCATGCCTATCGAGATAAAGCGGTGTTTGGCTATGGTGCCTGCTATA
GCGTGAAAAACGTCGCTGATTGCTTGGCGAGATTGAATCAAGCATCGTTC
TTCAACACTCCAGGACGCAGCACGACCTTTATTTCCACTGTGCGGAATGC
TCTCGATTTGCACGCCTTCTTCGGGCCTGAGGGTGGATGGGGAAGCTATC
GAGCACCAAACGTTTACAACGCTTTGCTTCAACAACGATGGAAGGAGAGT
GGACAGGCGAATGGACGAACCTATCAATCCAGCTTTCTGAGAAAAATACA
TAATAATCCGCCTTCAAAAGAGTTCTGGCAACAGTATGTAGACTTTTGCC
AAACAGCAGGAGGAAAAAGCAGTATTCCGTGGGTGGTTTGTGAAATGAAT
CTGTTCCAAAACGCAATTAATAACAAACAAAACAATGCATTTGCATTTCG
CTCAGCCAATATCATTACGCATTACATCGTCGGTGGTGGAAGCAAAGATG
ATAGAAGTTTTGTCTACAGCTGGATGAAAACCCATTTCCAGAAATATTCC
ATCGGTGTGTACGTTAATTATCCGGAGCTACAGCTTCCATACTACTCAAA
ATCGTACTGGGCGCATCACGTAGACTGGCTGAAGCAGGTGAAAATTTCGT
ATGATCCGTACAATTTCTTTATGAATCCGCAGCCTATACCGACCAAGTAA