Gvermi12814.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12814.t1
Unique NameGvermi12814.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1617800..1618694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_06734T0
Max annot lvl2759|Eukaryota
Evalue6.09e-15
EggNOG OGs2C1MM@1|root,2S2PZ@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12814Gvermi12814Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1617800..1618694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12814.t1Gvermi12814.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1617800..1618694 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12814.t1.stop1Gvermi12814.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1617800..1617802 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12814.t1.CDS1Gvermi12814.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1617800..1617806 -
Gvermi12814.t1.CDS2Gvermi12814.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1617895..1617915 -
Gvermi12814.t1.CDS3Gvermi12814.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1618100..1618185 -
Gvermi12814.t1.CDS4Gvermi12814.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1618284..1618694 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12814.t1.exon1Gvermi12814.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1617800..1617806 -
Gvermi12814.t1.exon2Gvermi12814.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1617895..1617915 -
Gvermi12814.t1.exon3Gvermi12814.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1618100..1618185 -
Gvermi12814.t1.exon4Gvermi12814.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1618284..1618694 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12814.t1.intron1Gvermi12814.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1617807..1617894 -
Gvermi12814.t1.intron2Gvermi12814.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1617916..1618099 -
Gvermi12814.t1.intron3Gvermi12814.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1618186..1618283 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12814.t1.start1Gvermi12814.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1618692..1618694 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12814.t1 ID=Gvermi12814.t1|Name=Gvermi12814.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=175bp
MDSLETLRQRVTTAKQSFLREAQPRSTTRAATRQQETEEPTRALLFAASA
LQNIGHVLEVVCGSVYSFWHALQPYEPAEWFAVVYGLFLVLFGGAFVTLV
ECGEAARQFGWQRIQLAVTALYYEVQNARRALDRDNKVDDNRDGVEDVKQ
LTAPELALRRMTVLSAHTRNGFRW*
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spliced messenger RNA

>Gvermi12814.t1 ID=Gvermi12814.t1|Name=Gvermi12814.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=525bp|location=Sequence derived from alignment at ScGOVlb_425:1617800..1618694- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCTCTAGAGACGCTAAGGCAGCGCGTGACGACGGCCAAGCAATC
ATTTCTTCGCGAAGCGCAGCCGCGCAGTACCACTCGCGCGGCAACGAGGC
AGCAGGAAACTGAGGAACCCACACGGGCGCTCCTGTTTGCAGCCTCGGCT
CTGCAGAACATTGGGCATGTGTTGGAGGTCGTGTGTGGCAGCGTATATTC
TTTTTGGCACGCTTTACAACCCTATGAGCCAGCGGAATGGTTTGCAGTGG
TATATGGGTTGTTCCTGGTGCTATTTGGAGGAGCGTTCGTCACCCTGGTG
GAGTGCGGCGAGGCGGCGCGACAATTTGGATGGCAGCGTATCCAACTGGC
CGTGACGGCGTTGTATTACGAAGTGCAAAATGCTCGTCGCGCACTGGACA
GAGACAATAAGGTGGATGACAATCGCGACGGCGTGGAGGATGTGAAGCAA
CTGACGGCGCCTGAGCTGGCGCTGCGTAGAATGACGGTTCTGAGCGCGCA
CACGAGAAATGGATTCCGGTGGTGA
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protein sequence of Gvermi12814.t1

>Gvermi12814.t1 ID=Gvermi12814.t1|Name=Gvermi12814.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=175bp
MDSLETLRQRVTTAKQSFLREAQPRSTTRAATRQQETEEPTRALLFAASA
LQNIGHVLEVVCGSVYSFWHALQPYEPAEWFAVVYGLFLVLFGGAFVTLV
ECGEAARQFGWQRIQLAVTALYYEVQNARRALDRDNKVDDNRDGVEDVKQ
LTAPELALRRMTVLSAHTRNGFRW*
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mRNA from alignment at ScGOVlb_425:1617800..1618694-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12814.t1 ID=Gvermi12814.t1|Name=Gvermi12814.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=895bp|location=Sequence derived from alignment at ScGOVlb_425:1617800..1618694- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCTCTAGAGACGCTAAGGCAGCGCGTGACGACGGCCAAGCAATC
ATTTCTTCGCGAAGCGCAGCCGCGCAGTACCACTCGCGCGGCAACGAGGC
AGCAGGAAACTGAGGAACCCACACGGGCGCTCCTGTTTGCAGCCTCGGCT
CTGCAGAACATTGGGCATGTGTTGGAGGTCGTGTGTGGCAGCGTATATTC
TTTTTGGCACGCTTTACAACCCTATGAGCCAGCGGAATGGTTTGCAGTGG
TATATGGGTTGTTCCTGGTGCTATTTGGAGGAGCGTTCGTCACCCTGGTG
GAGTGCGGCGAGGCGGCGCGACAATTTGGATGGCAGCGTATCCAACTGGC
CGTGACGGCGTTGTATTACGAAGTGCAAAATGCTCGTCGCGCACTGGACA
GAGACAATAAGGTAAGTGAAACTTCAAACACGGAGAAAGAGGGGAGCGCA
CGGGTGCGCACGGATACGGCCCTAACAGTGACTATAATGCAATGCGTGTT
GCTGCTCAGGTGGATGACAATCGCGACGGCGTGGAGGATGTGAAGCAACT
GACGGCGCCTGAGCTGGCGCTGCGTAGAATGACGGTTCTGAGCGCGTCAG
TGAACCCTGACGACGTGTCAGCGGCATTGGAAGGGCTGAGCATGGCGGCA
GTGGCGGTGACAGCGACGCTGCGGGTGCGCTTCGCCAAGGCGATCACGCT
GGGGTCGGCTATTGGTGACGTGTTGAGCGGAATGCTGTCGCCGCTGACGA
GCGCACTGTTGCGGGCGTGTTTGACGGAGGCACACGAGAAATGGATTCCG
GTACGTGGTTGGGCGGAGCAGATTTTGGAGCGGCAACGCGACGCGCGAGA
CGGACTGACTGACCGAGCGGGAGCGTGGGCGGCGACAGGTGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1617800..1618694-

>Gvermi12814.t1 ID=Gvermi12814.t1|Name=Gvermi12814.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=525bp|location=Sequence derived from alignment at ScGOVlb_425:1617800..1618694- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCTCTAGAGACGCTAAGGCAGCGCGTGACGACGGCCAAGCAATC
ATTTCTTCGCGAAGCGCAGCCGCGCAGTACCACTCGCGCGGCAACGAGGC
AGCAGGAAACTGAGGAACCCACACGGGCGCTCCTGTTTGCAGCCTCGGCT
CTGCAGAACATTGGGCATGTGTTGGAGGTCGTGTGTGGCAGCGTATATTC
TTTTTGGCACGCTTTACAACCCTATGAGCCAGCGGAATGGTTTGCAGTGG
TATATGGGTTGTTCCTGGTGCTATTTGGAGGAGCGTTCGTCACCCTGGTG
GAGTGCGGCGAGGCGGCGCGACAATTTGGATGGCAGCGTATCCAACTGGC
CGTGACGGCGTTGTATTACGAAGTGCAAAATGCTCGTCGCGCACTGGACA
GAGACAATAAGGTGGATGACAATCGCGACGGCGTGGAGGATGTGAAGCAA
CTGACGGCGCCTGAGCTGGCGCTGCGTAGAATGACGGTTCTGAGCGCGCA
CACGAGAAATGGATTCCGGTGGTGA
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