Gvermi12807.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12807.t1
Unique NameGvermi12807.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length392
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1581906..1583081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709310.1
Preferred nameVPS36
PFAMsEAP30,Vps36-NZF-N,Vps36_ESCRT-II
Max annot lvl2759|Eukaryota
KEGG rclassRC00010,RC00100,RC00950,RC01025
KEGG koko:K01426,ko:K12190
KEGG ReactionR02540,R03096,R03180,R03909,R05551,R05590
KEGG Pathwayko00330,ko00360,ko00380,ko00627,ko00643,ko01120,ko04144,map00330,map00360,map00380,map00627,map00643,map01120,map04144
KEGG ModuleM00410
GOsGO:0000003,GO:0000323,GO:0000429,GO:0000430,GO:0000433,GO:0000578,GO:0000814,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005770,GO:0005773,GO:0005829,GO:0006355,GO:0006357,GO:0006403,GO:0006508,GO:0006511,GO:0006605,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006914,GO:0006996,GO:0007032,GO:0007034,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007350,GO:0007351,GO:0007389,GO:0007584,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008298,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009892,GO:0009948,GO:0009952,GO:0009966,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010256,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010941,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030154,GO:0030163,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031902,GO:0031982,GO:0032182,GO:0032258,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034613,GO:0035282,GO:0036257,GO:0036258,GO:0036452,GO:0036477,GO:0042221,GO:0042493,GO:0042886,GO:0042981,GO:0043025,GO:0043067,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043328,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045013,GO:0045014,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0045450,GO:0045892,GO:0045934,GO:0045990,GO:0046015,GO:0046618,GO:0046907,GO:0048468,GO:0048469,GO:0048477,GO:0048519,GO:0048523,GO:0048583,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051235,GO:0051252,GO:0051253,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0051651,GO:0051704,GO:0051716,GO:0060255,GO:0060810,GO:0060811,GO:0061919,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070925,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0097159,GO:0097458,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:1904669,GO:2000112,GO:2000113,GO:2001141
Evalue2.75e-35
EggNOG OGsKOG2760@1|root,KOG2760@2759|Eukaryota
EC3.5.1.4
Descriptionprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12807Gvermi12807Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1581906..1583081 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12807.t1.start1Gvermi12807.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1581906..1581908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12807.t1.CDS1Gvermi12807.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1581906..1583081 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12807.t1.exon1Gvermi12807.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1581906..1583081 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12807.t1.stop1Gvermi12807.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1583079..1583081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12807.t1Gvermi12807.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1581906..1583081 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12807.t1 ID=Gvermi12807.t1|Name=Gvermi12807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=392bp
MQSFSPCDLTAAGTLKMVEGEYTTASIEKATLQTHDKKWTPYTRGLLSVT
THRIVWTDARRTRAIGAPLSALPSGAPTEDKSSPLRARIMLRYGRGVRVV
FEANSGARDRERFVSAVKAACARKEWERIAEQRAKEALERERMGEYVPRR
AGVSGVQDRVRLQNAQRREAIHSGFGSIDQLREQAEDLMKIARFFRAKKD
ASGEDNELLSMMAEMGIQSPVTKQVTGGNVAVYREELSRQLWEFLRVAVG
RVGGIMTLTDAYCVTLRNRATTELISAEDFRAACEAIGRLHVGLEVKRLE
SGVLALWTDSSKDATGAQSLREMAEKEGSVSALDVVRRRHIPIQRAVGML
KEAEAMGLLARDETTNGVRFFPNAFGTLLKNSRLGSGGREG*
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spliced messenger RNA

>Gvermi12807.t1 ID=Gvermi12807.t1|Name=Gvermi12807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at ScGOVlb_425:1581906..1583081+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAGCTTCTCTCCGTGCGACCTGACAGCAGCCGGCACGTTGAAAAT
GGTGGAAGGAGAGTATACAACGGCCAGCATCGAGAAGGCAACGCTACAGA
CGCACGACAAGAAGTGGACGCCGTACACCAGAGGGCTGCTCAGCGTAACG
ACGCACAGAATCGTATGGACGGATGCGCGTCGAACAAGAGCAATCGGGGC
GCCGCTGAGCGCGCTGCCGAGTGGCGCGCCCACGGAGGACAAATCGTCGC
CGCTTCGAGCCCGAATCATGCTGCGCTACGGGCGCGGGGTGCGCGTGGTG
TTCGAAGCAAACTCGGGGGCGCGCGACCGAGAGCGATTTGTGAGCGCCGT
GAAGGCGGCGTGCGCGCGCAAGGAATGGGAGCGCATCGCGGAGCAGAGGG
CGAAGGAGGCGTTGGAAAGGGAGAGGATGGGCGAGTACGTTCCCAGGAGA
GCCGGCGTAAGCGGGGTGCAAGACCGGGTGCGGCTGCAGAACGCGCAGAG
AAGGGAGGCGATACACAGCGGGTTCGGGTCGATCGACCAGCTTCGGGAAC
AGGCCGAGGACCTGATGAAGATTGCGAGGTTTTTTCGCGCAAAGAAGGAC
GCGAGCGGGGAGGACAACGAACTGCTGAGCATGATGGCGGAAATGGGGAT
CCAGTCGCCGGTGACCAAGCAGGTGACGGGCGGGAATGTGGCGGTGTACA
GGGAGGAGCTTTCGCGGCAGTTGTGGGAGTTTCTACGAGTGGCGGTGGGG
CGCGTCGGGGGGATCATGACGCTGACGGACGCGTACTGCGTGACGCTGAG
GAACCGGGCGACGACGGAACTGATTTCTGCCGAGGACTTTCGGGCGGCGT
GCGAGGCGATTGGACGGCTGCACGTGGGGCTGGAGGTGAAGAGGTTGGAG
AGCGGGGTGTTGGCGCTGTGGACAGACAGCTCGAAAGACGCGACAGGGGC
ACAGAGTTTACGTGAGATGGCGGAGAAGGAGGGGAGCGTGAGCGCGCTGG
ACGTGGTGCGGCGGCGGCACATCCCGATCCAGCGGGCGGTGGGCATGCTC
AAGGAGGCGGAGGCAATGGGGCTTTTGGCGCGAGACGAGACGACGAACGG
GGTGCGGTTCTTCCCGAACGCGTTTGGCACGCTGCTGAAGAATTCGCGGC
TCGGGAGCGGCGGCAGAGAGGGCTAG
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protein sequence of Gvermi12807.t1

>Gvermi12807.t1 ID=Gvermi12807.t1|Name=Gvermi12807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=392bp
MQSFSPCDLTAAGTLKMVEGEYTTASIEKATLQTHDKKWTPYTRGLLSVT
THRIVWTDARRTRAIGAPLSALPSGAPTEDKSSPLRARIMLRYGRGVRVV
FEANSGARDRERFVSAVKAACARKEWERIAEQRAKEALERERMGEYVPRR
AGVSGVQDRVRLQNAQRREAIHSGFGSIDQLREQAEDLMKIARFFRAKKD
ASGEDNELLSMMAEMGIQSPVTKQVTGGNVAVYREELSRQLWEFLRVAVG
RVGGIMTLTDAYCVTLRNRATTELISAEDFRAACEAIGRLHVGLEVKRLE
SGVLALWTDSSKDATGAQSLREMAEKEGSVSALDVVRRRHIPIQRAVGML
KEAEAMGLLARDETTNGVRFFPNAFGTLLKNSRLGSGGREG*
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mRNA from alignment at ScGOVlb_425:1581906..1583081+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12807.t1 ID=Gvermi12807.t1|Name=Gvermi12807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1176bp|location=Sequence derived from alignment at ScGOVlb_425:1581906..1583081+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAAGCTTCTCTCCGTGCGACCTGACAGCAGCCGGCACGTTGAAAAT
GGTGGAAGGAGAGTATACAACGGCCAGCATCGAGAAGGCAACGCTACAGA
CGCACGACAAGAAGTGGACGCCGTACACCAGAGGGCTGCTCAGCGTAACG
ACGCACAGAATCGTATGGACGGATGCGCGTCGAACAAGAGCAATCGGGGC
GCCGCTGAGCGCGCTGCCGAGTGGCGCGCCCACGGAGGACAAATCGTCGC
CGCTTCGAGCCCGAATCATGCTGCGCTACGGGCGCGGGGTGCGCGTGGTG
TTCGAAGCAAACTCGGGGGCGCGCGACCGAGAGCGATTTGTGAGCGCCGT
GAAGGCGGCGTGCGCGCGCAAGGAATGGGAGCGCATCGCGGAGCAGAGGG
CGAAGGAGGCGTTGGAAAGGGAGAGGATGGGCGAGTACGTTCCCAGGAGA
GCCGGCGTAAGCGGGGTGCAAGACCGGGTGCGGCTGCAGAACGCGCAGAG
AAGGGAGGCGATACACAGCGGGTTCGGGTCGATCGACCAGCTTCGGGAAC
AGGCCGAGGACCTGATGAAGATTGCGAGGTTTTTTCGCGCAAAGAAGGAC
GCGAGCGGGGAGGACAACGAACTGCTGAGCATGATGGCGGAAATGGGGAT
CCAGTCGCCGGTGACCAAGCAGGTGACGGGCGGGAATGTGGCGGTGTACA
GGGAGGAGCTTTCGCGGCAGTTGTGGGAGTTTCTACGAGTGGCGGTGGGG
CGCGTCGGGGGGATCATGACGCTGACGGACGCGTACTGCGTGACGCTGAG
GAACCGGGCGACGACGGAACTGATTTCTGCCGAGGACTTTCGGGCGGCGT
GCGAGGCGATTGGACGGCTGCACGTGGGGCTGGAGGTGAAGAGGTTGGAG
AGCGGGGTGTTGGCGCTGTGGACAGACAGCTCGAAAGACGCGACAGGGGC
ACAGAGTTTACGTGAGATGGCGGAGAAGGAGGGGAGCGTGAGCGCGCTGG
ACGTGGTGCGGCGGCGGCACATCCCGATCCAGCGGGCGGTGGGCATGCTC
AAGGAGGCGGAGGCAATGGGGCTTTTGGCGCGAGACGAGACGACGAACGG
GGTGCGGTTCTTCCCGAACGCGTTTGGCACGCTGCTGAAGAATTCGCGGC
TCGGGAGCGGCGGCAGAGAGGGCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1581906..1583081+

>Gvermi12807.t1 ID=Gvermi12807.t1|Name=Gvermi12807.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1176bp|location=Sequence derived from alignment at ScGOVlb_425:1581906..1583081+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAAAGCTTCTCTCCGTGCGACCTGACAGCAGCCGGCACGTTGAAAAT
GGTGGAAGGAGAGTATACAACGGCCAGCATCGAGAAGGCAACGCTACAGA
CGCACGACAAGAAGTGGACGCCGTACACCAGAGGGCTGCTCAGCGTAACG
ACGCACAGAATCGTATGGACGGATGCGCGTCGAACAAGAGCAATCGGGGC
GCCGCTGAGCGCGCTGCCGAGTGGCGCGCCCACGGAGGACAAATCGTCGC
CGCTTCGAGCCCGAATCATGCTGCGCTACGGGCGCGGGGTGCGCGTGGTG
TTCGAAGCAAACTCGGGGGCGCGCGACCGAGAGCGATTTGTGAGCGCCGT
GAAGGCGGCGTGCGCGCGCAAGGAATGGGAGCGCATCGCGGAGCAGAGGG
CGAAGGAGGCGTTGGAAAGGGAGAGGATGGGCGAGTACGTTCCCAGGAGA
GCCGGCGTAAGCGGGGTGCAAGACCGGGTGCGGCTGCAGAACGCGCAGAG
AAGGGAGGCGATACACAGCGGGTTCGGGTCGATCGACCAGCTTCGGGAAC
AGGCCGAGGACCTGATGAAGATTGCGAGGTTTTTTCGCGCAAAGAAGGAC
GCGAGCGGGGAGGACAACGAACTGCTGAGCATGATGGCGGAAATGGGGAT
CCAGTCGCCGGTGACCAAGCAGGTGACGGGCGGGAATGTGGCGGTGTACA
GGGAGGAGCTTTCGCGGCAGTTGTGGGAGTTTCTACGAGTGGCGGTGGGG
CGCGTCGGGGGGATCATGACGCTGACGGACGCGTACTGCGTGACGCTGAG
GAACCGGGCGACGACGGAACTGATTTCTGCCGAGGACTTTCGGGCGGCGT
GCGAGGCGATTGGACGGCTGCACGTGGGGCTGGAGGTGAAGAGGTTGGAG
AGCGGGGTGTTGGCGCTGTGGACAGACAGCTCGAAAGACGCGACAGGGGC
ACAGAGTTTACGTGAGATGGCGGAGAAGGAGGGGAGCGTGAGCGCGCTGG
ACGTGGTGCGGCGGCGGCACATCCCGATCCAGCGGGCGGTGGGCATGCTC
AAGGAGGCGGAGGCAATGGGGCTTTTGGCGCGAGACGAGACGACGAACGG
GGTGCGGTTCTTCCCGAACGCGTTTGGCACGCTGCTGAAGAATTCGCGGC
TCGGGAGCGGCGGCAGAGAGGGCTAG
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