Gvermi12806.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12806.t1
Unique NameGvermi12806.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1579781..1581313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FW99
PFAMsDUF1967,GTP1_OBG,MMR_HSR1
Max annot lvl2759|Eukaryota
KEGG koko:K03979
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009668,GO:0009706,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010027,GO:0010154,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019866,GO:0022414,GO:0022613,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032501,GO:0032502,GO:0034470,GO:0034641,GO:0034660,GO:0042170,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061024,GO:0061458,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Evalue8.15e-124
EggNOG OGsCOG0536@1|root,KOG1489@2759|Eukaryota
DescriptionGTP-binding protein
COG categoryP
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12806Gvermi12806Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1579781..1581313 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12806.t1.stop1Gvermi12806.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1579781..1579783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12806.t1.CDS1Gvermi12806.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1579781..1581313 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12806.t1.exon1Gvermi12806.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1579781..1581313 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12806.t1.start1Gvermi12806.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1581311..1581313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12806.t1Gvermi12806.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1579781..1581313 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12806.t1 ID=Gvermi12806.t1|Name=Gvermi12806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=511bp
MEGAFLCAAPLQTQRLAGPFSRSRTSRATRQIVRTSSTPRAVISESDTHR
APTTQNQRYETPTTTNSDWMFFDVARILVKAGSGGNGCVAFRREKGVPRG
GPSGGSGGKGGSIIFVTSAGGNTLSKFRSGAAFRAKDGSNGQGKSRHGEA
ASDVVVSVPRGTVVRDDNGRILADLSHEGQTFRAARGGRGGRGNQAFKTD
HNRAPRIAEQGERGVERRLRLELKLVADVALVGFPNAGKSTLLDAVSNAR
PKIADYPFTTIVPNLGVVDGIAGGNGLVFADVPGLIEGAHRGVGMGVSFL
RHIERSKVVVHILDGTADDVIERYRAIRLELELFDQRLAEKKEVVLLNKA
DVPGVQAKWENGLKEQLVEAVRGHKRIAIISAKSRQGLSEMMPKLKALVD
NVVQAESVVVLEDEDDEHYGQEPASVECVEEGRFRVGGYKVERAYHMTNW
DYIEGIDRFQRILEALGVNRMLVNAGAKDGDSVICFEREFDYYKEENIYS
AAAALDGYFD*
back to top

spliced messenger RNA

>Gvermi12806.t1 ID=Gvermi12806.t1|Name=Gvermi12806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at ScGOVlb_425:1579781..1581313- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGTGCCTTTCTTTGTGCTGCCCCGTTGCAAACGCAGCGGTTGGC
GGGGCCATTCTCTCGCAGCAGGACGTCGCGAGCAACCAGGCAGATTGTCC
GCACTTCTTCAACTCCTCGTGCAGTCATCTCCGAATCTGACACGCACCGT
GCACCAACCACACAAAACCAGCGCTATGAAACGCCAACTACGACCAACTC
TGACTGGATGTTTTTCGACGTCGCCCGCATCCTCGTCAAGGCAGGCAGCG
GTGGAAACGGTTGTGTCGCGTTCCGTCGAGAAAAGGGCGTTCCTCGAGGC
GGCCCTTCAGGCGGCTCTGGAGGCAAGGGTGGATCAATAATCTTCGTCAC
GTCGGCAGGTGGCAATACGTTATCCAAGTTTCGCAGCGGGGCCGCCTTTA
GAGCAAAAGACGGATCTAACGGACAGGGCAAGAGTCGGCATGGAGAGGCT
GCGTCTGATGTTGTTGTTTCTGTGCCACGAGGAACTGTCGTCAGAGACGA
CAACGGCAGGATACTGGCCGACCTCTCGCATGAGGGGCAAACTTTTCGCG
CAGCTCGAGGCGGACGTGGCGGTAGAGGTAACCAAGCCTTCAAGACGGAC
CATAATCGCGCGCCTAGAATTGCTGAACAGGGTGAACGGGGTGTGGAGCG
CAGACTGCGTTTAGAGCTGAAGCTTGTGGCAGATGTTGCGCTGGTAGGCT
TCCCCAACGCTGGGAAGAGTACACTTCTTGATGCCGTTTCTAACGCGCGA
CCGAAGATTGCTGACTATCCTTTTACAACAATAGTCCCCAACCTCGGTGT
TGTGGACGGAATTGCTGGGGGGAACGGCCTCGTTTTTGCCGATGTTCCTG
GCCTTATTGAGGGTGCTCATCGCGGCGTTGGCATGGGCGTTTCCTTCTTG
CGTCACATTGAGCGATCTAAGGTTGTTGTCCATATTCTCGATGGAACTGC
AGATGACGTAATTGAAAGATATCGTGCTATTCGTTTAGAATTGGAACTGT
TCGATCAACGTCTCGCTGAAAAAAAAGAAGTTGTTCTCCTCAACAAGGCC
GATGTACCTGGAGTTCAGGCCAAGTGGGAGAACGGGCTAAAGGAACAGCT
TGTTGAAGCTGTGCGCGGCCACAAAAGGATCGCCATTATTAGCGCAAAGT
CGAGGCAGGGCCTGTCAGAGATGATGCCTAAGCTGAAGGCGCTTGTGGAC
AATGTTGTGCAAGCGGAAAGTGTTGTGGTTTTGGAAGATGAGGACGATGA
GCACTACGGACAAGAACCGGCATCCGTTGAATGTGTTGAAGAAGGCCGAT
TCCGCGTGGGCGGTTACAAAGTAGAACGCGCATATCATATGACAAATTGG
GATTACATCGAGGGAATCGACCGATTTCAGAGAATACTTGAAGCGCTAGG
GGTCAACCGAATGCTCGTCAATGCTGGGGCGAAAGACGGGGATTCTGTGA
TATGCTTTGAAAGAGAGTTTGATTACTACAAGGAGGAGAACATCTACAGC
GCTGCCGCAGCGCTTGACGGATACTTTGATTAA
back to top

protein sequence of Gvermi12806.t1

>Gvermi12806.t1 ID=Gvermi12806.t1|Name=Gvermi12806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=511bp
MEGAFLCAAPLQTQRLAGPFSRSRTSRATRQIVRTSSTPRAVISESDTHR
APTTQNQRYETPTTTNSDWMFFDVARILVKAGSGGNGCVAFRREKGVPRG
GPSGGSGGKGGSIIFVTSAGGNTLSKFRSGAAFRAKDGSNGQGKSRHGEA
ASDVVVSVPRGTVVRDDNGRILADLSHEGQTFRAARGGRGGRGNQAFKTD
HNRAPRIAEQGERGVERRLRLELKLVADVALVGFPNAGKSTLLDAVSNAR
PKIADYPFTTIVPNLGVVDGIAGGNGLVFADVPGLIEGAHRGVGMGVSFL
RHIERSKVVVHILDGTADDVIERYRAIRLELELFDQRLAEKKEVVLLNKA
DVPGVQAKWENGLKEQLVEAVRGHKRIAIISAKSRQGLSEMMPKLKALVD
NVVQAESVVVLEDEDDEHYGQEPASVECVEEGRFRVGGYKVERAYHMTNW
DYIEGIDRFQRILEALGVNRMLVNAGAKDGDSVICFEREFDYYKEENIYS
AAAALDGYFD*
back to top

mRNA from alignment at ScGOVlb_425:1579781..1581313-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12806.t1 ID=Gvermi12806.t1|Name=Gvermi12806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at ScGOVlb_425:1579781..1581313- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGGTGCCTTTCTTTGTGCTGCCCCGTTGCAAACGCAGCGGTTGGC
GGGGCCATTCTCTCGCAGCAGGACGTCGCGAGCAACCAGGCAGATTGTCC
GCACTTCTTCAACTCCTCGTGCAGTCATCTCCGAATCTGACACGCACCGT
GCACCAACCACACAAAACCAGCGCTATGAAACGCCAACTACGACCAACTC
TGACTGGATGTTTTTCGACGTCGCCCGCATCCTCGTCAAGGCAGGCAGCG
GTGGAAACGGTTGTGTCGCGTTCCGTCGAGAAAAGGGCGTTCCTCGAGGC
GGCCCTTCAGGCGGCTCTGGAGGCAAGGGTGGATCAATAATCTTCGTCAC
GTCGGCAGGTGGCAATACGTTATCCAAGTTTCGCAGCGGGGCCGCCTTTA
GAGCAAAAGACGGATCTAACGGACAGGGCAAGAGTCGGCATGGAGAGGCT
GCGTCTGATGTTGTTGTTTCTGTGCCACGAGGAACTGTCGTCAGAGACGA
CAACGGCAGGATACTGGCCGACCTCTCGCATGAGGGGCAAACTTTTCGCG
CAGCTCGAGGCGGACGTGGCGGTAGAGGTAACCAAGCCTTCAAGACGGAC
CATAATCGCGCGCCTAGAATTGCTGAACAGGGTGAACGGGGTGTGGAGCG
CAGACTGCGTTTAGAGCTGAAGCTTGTGGCAGATGTTGCGCTGGTAGGCT
TCCCCAACGCTGGGAAGAGTACACTTCTTGATGCCGTTTCTAACGCGCGA
CCGAAGATTGCTGACTATCCTTTTACAACAATAGTCCCCAACCTCGGTGT
TGTGGACGGAATTGCTGGGGGGAACGGCCTCGTTTTTGCCGATGTTCCTG
GCCTTATTGAGGGTGCTCATCGCGGCGTTGGCATGGGCGTTTCCTTCTTG
CGTCACATTGAGCGATCTAAGGTTGTTGTCCATATTCTCGATGGAACTGC
AGATGACGTAATTGAAAGATATCGTGCTATTCGTTTAGAATTGGAACTGT
TCGATCAACGTCTCGCTGAAAAAAAAGAAGTTGTTCTCCTCAACAAGGCC
GATGTACCTGGAGTTCAGGCCAAGTGGGAGAACGGGCTAAAGGAACAGCT
TGTTGAAGCTGTGCGCGGCCACAAAAGGATCGCCATTATTAGCGCAAAGT
CGAGGCAGGGCCTGTCAGAGATGATGCCTAAGCTGAAGGCGCTTGTGGAC
AATGTTGTGCAAGCGGAAAGTGTTGTGGTTTTGGAAGATGAGGACGATGA
GCACTACGGACAAGAACCGGCATCCGTTGAATGTGTTGAAGAAGGCCGAT
TCCGCGTGGGCGGTTACAAAGTAGAACGCGCATATCATATGACAAATTGG
GATTACATCGAGGGAATCGACCGATTTCAGAGAATACTTGAAGCGCTAGG
GGTCAACCGAATGCTCGTCAATGCTGGGGCGAAAGACGGGGATTCTGTGA
TATGCTTTGAAAGAGAGTTTGATTACTACAAGGAGGAGAACATCTACAGC
GCTGCCGCAGCGCTTGACGGATACTTTGATTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1579781..1581313-

>Gvermi12806.t1 ID=Gvermi12806.t1|Name=Gvermi12806.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1533bp|location=Sequence derived from alignment at ScGOVlb_425:1579781..1581313- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGGTGCCTTTCTTTGTGCTGCCCCGTTGCAAACGCAGCGGTTGGC
GGGGCCATTCTCTCGCAGCAGGACGTCGCGAGCAACCAGGCAGATTGTCC
GCACTTCTTCAACTCCTCGTGCAGTCATCTCCGAATCTGACACGCACCGT
GCACCAACCACACAAAACCAGCGCTATGAAACGCCAACTACGACCAACTC
TGACTGGATGTTTTTCGACGTCGCCCGCATCCTCGTCAAGGCAGGCAGCG
GTGGAAACGGTTGTGTCGCGTTCCGTCGAGAAAAGGGCGTTCCTCGAGGC
GGCCCTTCAGGCGGCTCTGGAGGCAAGGGTGGATCAATAATCTTCGTCAC
GTCGGCAGGTGGCAATACGTTATCCAAGTTTCGCAGCGGGGCCGCCTTTA
GAGCAAAAGACGGATCTAACGGACAGGGCAAGAGTCGGCATGGAGAGGCT
GCGTCTGATGTTGTTGTTTCTGTGCCACGAGGAACTGTCGTCAGAGACGA
CAACGGCAGGATACTGGCCGACCTCTCGCATGAGGGGCAAACTTTTCGCG
CAGCTCGAGGCGGACGTGGCGGTAGAGGTAACCAAGCCTTCAAGACGGAC
CATAATCGCGCGCCTAGAATTGCTGAACAGGGTGAACGGGGTGTGGAGCG
CAGACTGCGTTTAGAGCTGAAGCTTGTGGCAGATGTTGCGCTGGTAGGCT
TCCCCAACGCTGGGAAGAGTACACTTCTTGATGCCGTTTCTAACGCGCGA
CCGAAGATTGCTGACTATCCTTTTACAACAATAGTCCCCAACCTCGGTGT
TGTGGACGGAATTGCTGGGGGGAACGGCCTCGTTTTTGCCGATGTTCCTG
GCCTTATTGAGGGTGCTCATCGCGGCGTTGGCATGGGCGTTTCCTTCTTG
CGTCACATTGAGCGATCTAAGGTTGTTGTCCATATTCTCGATGGAACTGC
AGATGACGTAATTGAAAGATATCGTGCTATTCGTTTAGAATTGGAACTGT
TCGATCAACGTCTCGCTGAAAAAAAAGAAGTTGTTCTCCTCAACAAGGCC
GATGTACCTGGAGTTCAGGCCAAGTGGGAGAACGGGCTAAAGGAACAGCT
TGTTGAAGCTGTGCGCGGCCACAAAAGGATCGCCATTATTAGCGCAAAGT
CGAGGCAGGGCCTGTCAGAGATGATGCCTAAGCTGAAGGCGCTTGTGGAC
AATGTTGTGCAAGCGGAAAGTGTTGTGGTTTTGGAAGATGAGGACGATGA
GCACTACGGACAAGAACCGGCATCCGTTGAATGTGTTGAAGAAGGCCGAT
TCCGCGTGGGCGGTTACAAAGTAGAACGCGCATATCATATGACAAATTGG
GATTACATCGAGGGAATCGACCGATTTCAGAGAATACTTGAAGCGCTAGG
GGTCAACCGAATGCTCGTCAATGCTGGGGCGAAAGACGGGGATTCTGTGA
TATGCTTTGAAAGAGAGTTTGATTACTACAAGGAGGAGAACATCTACAGC
GCTGCCGCAGCGCTTGACGGATACTTTGATTAA
back to top