Gvermi12805.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12805.t1
Unique NameGvermi12805.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1578778..1579650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087SJN7
PFAMsDAP_epimerase
Max annot lvl3041|Chlorophyta
KEGG rclassRC00302
KEGG koko:K01778
KEGG ReactionR02735
KEGG Pathwayko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00527
Evalue1.43e-99
EggNOG OGsCOG0253@1|root,2QQKJ@2759|Eukaryota,37QZX@33090|Viridiplantae,34GNM@3041|Chlorophyta
EC5.1.1.7
DescriptionDiaminopimelate epimerase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12805Gvermi12805Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1578778..1579650 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12805.t1.start1Gvermi12805.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1578778..1578780 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12805.t1.CDS1Gvermi12805.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1578778..1579650 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12805.t1.exon1Gvermi12805.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1578778..1579650 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12805.t1.stop1Gvermi12805.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1579648..1579650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12805.t1Gvermi12805.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1578778..1579650 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12805.t1 ID=Gvermi12805.t1|Name=Gvermi12805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=291bp
MTAFRKYHGLGNDFVLIDNRHTSSPVLSPTEAEAVCNRNTGVGADGVIFL
LPPTKPTSDFGMRLYNSDGTEPEMCGNGIRCLARFAADLGVQGRKNCKYV
VDTGAGEIIPEMETGSEQVKVDMGAPILEPEQVPTKLKTSASNEYQDVLE
HVAGQDWTFSCVSMGNPHAVTFVTKEVYDDMDSRLEAHGPSFENHPVFPQ
RTNTEFVYQHNKTEFDMLVWERGAGRTMACGTGACAVLVAAVITGRAEKD
VPAIIHLPGGDLTIEWDSSSNHVFMTGPAKLVFEGKLANL*
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spliced messenger RNA

>Gvermi12805.t1 ID=Gvermi12805.t1|Name=Gvermi12805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=873bp|location=Sequence derived from alignment at ScGOVlb_425:1578778..1579650+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCATTTCGTAAATACCATGGACTCGGAAACGACTTTGTACTGAT
CGATAATAGACACACATCATCGCCGGTCTTGAGCCCGACTGAAGCAGAAG
CAGTATGCAATCGCAATACAGGAGTCGGTGCAGATGGAGTGATATTTCTT
CTGCCTCCAACAAAACCCACCTCGGATTTCGGTATGAGATTGTACAACTC
CGATGGCACGGAGCCGGAGATGTGTGGAAATGGAATTCGCTGTTTAGCAC
GTTTCGCCGCTGACCTGGGTGTTCAAGGGCGCAAAAATTGCAAGTACGTG
GTAGACACGGGAGCCGGGGAAATCATTCCGGAAATGGAGACAGGATCAGA
GCAAGTCAAGGTAGACATGGGAGCTCCAATTCTTGAGCCTGAGCAGGTCC
CCACCAAATTAAAAACATCTGCGTCAAACGAGTATCAAGATGTCTTAGAG
CATGTTGCTGGGCAGGACTGGACTTTCTCATGTGTTTCGATGGGGAATCC
TCATGCCGTTACCTTTGTGACGAAGGAAGTGTATGATGACATGGATTCTC
GTCTTGAAGCACATGGGCCTAGCTTCGAAAACCACCCCGTTTTCCCGCAG
AGAACGAACACGGAATTCGTGTACCAACATAACAAGACAGAATTTGATAT
GCTCGTATGGGAACGCGGAGCGGGTCGTACAATGGCGTGTGGAACGGGCG
CCTGTGCGGTCCTCGTTGCCGCAGTGATAACCGGTCGTGCAGAAAAGGAT
GTGCCTGCCATCATTCATTTACCAGGGGGAGACTTGACTATTGAGTGGGA
TTCGAGTTCCAATCATGTGTTTATGACTGGACCCGCCAAACTTGTTTTTG
AGGGTAAACTGGCAAATTTATGA
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protein sequence of Gvermi12805.t1

>Gvermi12805.t1 ID=Gvermi12805.t1|Name=Gvermi12805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=291bp
MTAFRKYHGLGNDFVLIDNRHTSSPVLSPTEAEAVCNRNTGVGADGVIFL
LPPTKPTSDFGMRLYNSDGTEPEMCGNGIRCLARFAADLGVQGRKNCKYV
VDTGAGEIIPEMETGSEQVKVDMGAPILEPEQVPTKLKTSASNEYQDVLE
HVAGQDWTFSCVSMGNPHAVTFVTKEVYDDMDSRLEAHGPSFENHPVFPQ
RTNTEFVYQHNKTEFDMLVWERGAGRTMACGTGACAVLVAAVITGRAEKD
VPAIIHLPGGDLTIEWDSSSNHVFMTGPAKLVFEGKLANL*
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mRNA from alignment at ScGOVlb_425:1578778..1579650+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12805.t1 ID=Gvermi12805.t1|Name=Gvermi12805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=873bp|location=Sequence derived from alignment at ScGOVlb_425:1578778..1579650+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGCATTTCGTAAATACCATGGACTCGGAAACGACTTTGTACTGAT
CGATAATAGACACACATCATCGCCGGTCTTGAGCCCGACTGAAGCAGAAG
CAGTATGCAATCGCAATACAGGAGTCGGTGCAGATGGAGTGATATTTCTT
CTGCCTCCAACAAAACCCACCTCGGATTTCGGTATGAGATTGTACAACTC
CGATGGCACGGAGCCGGAGATGTGTGGAAATGGAATTCGCTGTTTAGCAC
GTTTCGCCGCTGACCTGGGTGTTCAAGGGCGCAAAAATTGCAAGTACGTG
GTAGACACGGGAGCCGGGGAAATCATTCCGGAAATGGAGACAGGATCAGA
GCAAGTCAAGGTAGACATGGGAGCTCCAATTCTTGAGCCTGAGCAGGTCC
CCACCAAATTAAAAACATCTGCGTCAAACGAGTATCAAGATGTCTTAGAG
CATGTTGCTGGGCAGGACTGGACTTTCTCATGTGTTTCGATGGGGAATCC
TCATGCCGTTACCTTTGTGACGAAGGAAGTGTATGATGACATGGATTCTC
GTCTTGAAGCACATGGGCCTAGCTTCGAAAACCACCCCGTTTTCCCGCAG
AGAACGAACACGGAATTCGTGTACCAACATAACAAGACAGAATTTGATAT
GCTCGTATGGGAACGCGGAGCGGGTCGTACAATGGCGTGTGGAACGGGCG
CCTGTGCGGTCCTCGTTGCCGCAGTGATAACCGGTCGTGCAGAAAAGGAT
GTGCCTGCCATCATTCATTTACCAGGGGGAGACTTGACTATTGAGTGGGA
TTCGAGTTCCAATCATGTGTTTATGACTGGACCCGCCAAACTTGTTTTTG
AGGGTAAACTGGCAAATTTATGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1578778..1579650+

>Gvermi12805.t1 ID=Gvermi12805.t1|Name=Gvermi12805.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=873bp|location=Sequence derived from alignment at ScGOVlb_425:1578778..1579650+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGCATTTCGTAAATACCATGGACTCGGAAACGACTTTGTACTGAT
CGATAATAGACACACATCATCGCCGGTCTTGAGCCCGACTGAAGCAGAAG
CAGTATGCAATCGCAATACAGGAGTCGGTGCAGATGGAGTGATATTTCTT
CTGCCTCCAACAAAACCCACCTCGGATTTCGGTATGAGATTGTACAACTC
CGATGGCACGGAGCCGGAGATGTGTGGAAATGGAATTCGCTGTTTAGCAC
GTTTCGCCGCTGACCTGGGTGTTCAAGGGCGCAAAAATTGCAAGTACGTG
GTAGACACGGGAGCCGGGGAAATCATTCCGGAAATGGAGACAGGATCAGA
GCAAGTCAAGGTAGACATGGGAGCTCCAATTCTTGAGCCTGAGCAGGTCC
CCACCAAATTAAAAACATCTGCGTCAAACGAGTATCAAGATGTCTTAGAG
CATGTTGCTGGGCAGGACTGGACTTTCTCATGTGTTTCGATGGGGAATCC
TCATGCCGTTACCTTTGTGACGAAGGAAGTGTATGATGACATGGATTCTC
GTCTTGAAGCACATGGGCCTAGCTTCGAAAACCACCCCGTTTTCCCGCAG
AGAACGAACACGGAATTCGTGTACCAACATAACAAGACAGAATTTGATAT
GCTCGTATGGGAACGCGGAGCGGGTCGTACAATGGCGTGTGGAACGGGCG
CCTGTGCGGTCCTCGTTGCCGCAGTGATAACCGGTCGTGCAGAAAAGGAT
GTGCCTGCCATCATTCATTTACCAGGGGGAGACTTGACTATTGAGTGGGA
TTCGAGTTCCAATCATGTGTTTATGACTGGACCCGCCAAACTTGTTTTTG
AGGGTAAACTGGCAAATTTATGA
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