Gvermi12804.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12804.t1
Unique NameGvermi12804.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1575520..1576185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX44572
PFAMsRuvX
Max annot lvl2759|Eukaryota
KEGG koko:K07447
Evalue6.17e-20
EggNOG OGs2E4SD@1|root,2SBMG@2759|Eukaryota
DescriptionHolliday junction resolvase
COG categoryS
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12804Gvermi12804Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1575520..1576185 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12804.t1.stop1Gvermi12804.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1575520..1575522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12804.t1.CDS1Gvermi12804.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1575520..1576185 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12804.t1.exon1Gvermi12804.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1575520..1576185 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12804.t1.start1Gvermi12804.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1576183..1576185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12804.t1Gvermi12804.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1575520..1576185 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12804.t1 ID=Gvermi12804.t1|Name=Gvermi12804.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=222bp
MNTIAFFSACPAGLGPHIPCIGNQRSKRKIVARIGERTLGVDYGVRRVGL
AISVGVAPRPLQRIDHFGNPFKVANDVARIASCNLAEAIVVGMPVDIYGR
ELSQAHTTRNFVQQLIRCAPWAKILVLNETFTSKDAKEQLRDSGIVGRIV
EDFIDSESAVMLLQRHYSDMDDYKAELVHVPKVVSVEQRRIEERMTYAEW
KKLAMQRAAQHVQSGKKKKKK*
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spliced messenger RNA

>Gvermi12804.t1 ID=Gvermi12804.t1|Name=Gvermi12804.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp|location=Sequence derived from alignment at ScGOVlb_425:1575520..1576185- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACCATAGCCTTTTTTTCTGCATGCCCTGCCGGACTGGGGCCGCA
CATTCCATGCATTGGAAATCAGCGATCAAAGAGAAAGATCGTGGCCCGAA
TAGGGGAACGCACTCTGGGTGTCGACTACGGTGTGCGTCGAGTTGGCCTG
GCAATCTCAGTGGGAGTGGCACCCCGACCACTCCAACGTATCGACCACTT
TGGCAATCCGTTCAAGGTAGCAAACGATGTTGCACGCATCGCCAGCTGCA
ACCTCGCTGAAGCAATAGTGGTAGGCATGCCAGTCGATATCTACGGCAGG
GAGTTGTCGCAAGCCCATACCACTCGCAATTTCGTGCAGCAGCTGATACG
CTGCGCCCCATGGGCAAAGATTCTGGTCCTCAACGAAACCTTCACGTCAA
AAGACGCCAAAGAACAACTACGTGACTCAGGGATTGTCGGGAGGATTGTC
GAGGACTTTATCGATAGCGAGTCGGCAGTCATGCTTTTGCAGCGGCATTA
CTCGGACATGGACGATTACAAGGCGGAACTGGTGCACGTGCCGAAAGTCG
TCAGCGTTGAGCAAAGACGAATCGAGGAAAGAATGACGTACGCGGAGTGG
AAGAAACTGGCAATGCAAAGAGCTGCGCAACACGTGCAGAGTGGAAAAAA
GAAGAAGAAAAAGTAA
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protein sequence of Gvermi12804.t1

>Gvermi12804.t1 ID=Gvermi12804.t1|Name=Gvermi12804.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=222bp
MNTIAFFSACPAGLGPHIPCIGNQRSKRKIVARIGERTLGVDYGVRRVGL
AISVGVAPRPLQRIDHFGNPFKVANDVARIASCNLAEAIVVGMPVDIYGR
ELSQAHTTRNFVQQLIRCAPWAKILVLNETFTSKDAKEQLRDSGIVGRIV
EDFIDSESAVMLLQRHYSDMDDYKAELVHVPKVVSVEQRRIEERMTYAEW
KKLAMQRAAQHVQSGKKKKKK*
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mRNA from alignment at ScGOVlb_425:1575520..1576185-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12804.t1 ID=Gvermi12804.t1|Name=Gvermi12804.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp|location=Sequence derived from alignment at ScGOVlb_425:1575520..1576185- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACACCATAGCCTTTTTTTCTGCATGCCCTGCCGGACTGGGGCCGCA
CATTCCATGCATTGGAAATCAGCGATCAAAGAGAAAGATCGTGGCCCGAA
TAGGGGAACGCACTCTGGGTGTCGACTACGGTGTGCGTCGAGTTGGCCTG
GCAATCTCAGTGGGAGTGGCACCCCGACCACTCCAACGTATCGACCACTT
TGGCAATCCGTTCAAGGTAGCAAACGATGTTGCACGCATCGCCAGCTGCA
ACCTCGCTGAAGCAATAGTGGTAGGCATGCCAGTCGATATCTACGGCAGG
GAGTTGTCGCAAGCCCATACCACTCGCAATTTCGTGCAGCAGCTGATACG
CTGCGCCCCATGGGCAAAGATTCTGGTCCTCAACGAAACCTTCACGTCAA
AAGACGCCAAAGAACAACTACGTGACTCAGGGATTGTCGGGAGGATTGTC
GAGGACTTTATCGATAGCGAGTCGGCAGTCATGCTTTTGCAGCGGCATTA
CTCGGACATGGACGATTACAAGGCGGAACTGGTGCACGTGCCGAAAGTCG
TCAGCGTTGAGCAAAGACGAATCGAGGAAAGAATGACGTACGCGGAGTGG
AAGAAACTGGCAATGCAAAGAGCTGCGCAACACGTGCAGAGTGGAAAAAA
GAAGAAGAAAAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1575520..1576185-

>Gvermi12804.t1 ID=Gvermi12804.t1|Name=Gvermi12804.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=666bp|location=Sequence derived from alignment at ScGOVlb_425:1575520..1576185- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACACCATAGCCTTTTTTTCTGCATGCCCTGCCGGACTGGGGCCGCA
CATTCCATGCATTGGAAATCAGCGATCAAAGAGAAAGATCGTGGCCCGAA
TAGGGGAACGCACTCTGGGTGTCGACTACGGTGTGCGTCGAGTTGGCCTG
GCAATCTCAGTGGGAGTGGCACCCCGACCACTCCAACGTATCGACCACTT
TGGCAATCCGTTCAAGGTAGCAAACGATGTTGCACGCATCGCCAGCTGCA
ACCTCGCTGAAGCAATAGTGGTAGGCATGCCAGTCGATATCTACGGCAGG
GAGTTGTCGCAAGCCCATACCACTCGCAATTTCGTGCAGCAGCTGATACG
CTGCGCCCCATGGGCAAAGATTCTGGTCCTCAACGAAACCTTCACGTCAA
AAGACGCCAAAGAACAACTACGTGACTCAGGGATTGTCGGGAGGATTGTC
GAGGACTTTATCGATAGCGAGTCGGCAGTCATGCTTTTGCAGCGGCATTA
CTCGGACATGGACGATTACAAGGCGGAACTGGTGCACGTGCCGAAAGTCG
TCAGCGTTGAGCAAAGACGAATCGAGGAAAGAATGACGTACGCGGAGTGG
AAGAAACTGGCAATGCAAAGAGCTGCGCAACACGTGCAGAGTGGAAAAAA
GAAGAAGAAAAAGTAA
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