Gvermi12793.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12793.t1
Unique Name	Gvermi12793.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	485

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1531970..1533424 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705663.1
PFAMs	ArsA_ATPase
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01551
KEGG TC	3.A.19.1,3.A.21.1,3.A.4.1
Evalue	2.51e-133
EggNOG OGs	COG0003@1\|root,KOG2825@2759\|Eukaryota
EC	3.6.3.16
Description	ATPase activity
COG category	P
BRITE	ko00000,ko01000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12793	Gvermi12793	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1531970..1533424 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12793.t1.start1	Gvermi12793.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1531970..1531972 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12793.t1.CDS1	Gvermi12793.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1531970..1533424 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12793.t1.exon1	Gvermi12793.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1531970..1533424 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12793.t1.stop1	Gvermi12793.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1533422..1533424 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12793.t1	Gvermi12793.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1531970..1533424 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1531970..1533424+
coding sequence from alignment at ScGOVlb_425:1531970..1533424+

mRNA sequence

>Gvermi12793.t1 ID=Gvermi12793.t1|Name=Gvermi12793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=485bp
MLLGIPRVFGHRPKQQEIVETVQPAPTPPPLPPPDKQGPMQWAQAHPFQA
AAIISICITLIRRTIAVVSPPTAAAKPIKTATPASASASASASASPKTRS
PPSRSTLRAVPRRHEASEEALDLLANTARKYIIVGGKGGVGKTSMSAAVA
TAFADRGQTTLIVSTDPAHSLSDAFGQSVSGGDPVPVMGIDNLYAQEVDP
NSMKATFNMMQQMDGARGMEDMGLEDLNSLFETIPPGFDEAVALVEIVKY
IEADAEYAKFDRIVFDTAPTGHTLRLLALPDFLNGFFGKMISMKSKFGNV
MNQFKGMFGGGDGGMDNSVEDMEELKRSMNMVRELFRDELQTEFIVATIP
NMMAIAESRRLLDELNKESIPVRHVFVNQVQPENEQCSFCATRFKEQRNN
MQLLEREFAGLQIATVQSFDKEIKGAGALRAMSAQLFPQTAEEARAREAD
DGAPRDAPRDAATPPPPPPPPPPSAPRAKAELVE*

spliced messenger RNA

>Gvermi12793.t1 ID=Gvermi12793.t1|Name=Gvermi12793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1455bp|location=Sequence derived from alignment at ScGOVlb_425:1531970..1533424+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTCGGCATCCCGCGCGTGTTCGGCCATCGCCCCAAGCAACAGGA
AATCGTCGAGACCGTgcagccggcgcccacgccgccgccgctgccgcctc
cgGACAAGCAGGGCCCCATGCAGTGGGCCCAGGCCCACCCGTTTCAGGCC
GCCGCCATCATCTCCATCTGCATCACCCTCATACGCCGCACCATCGCCGT
CGTGTCGCCGCCCACCGCCGCCGCCAAGCCCATCAAGACCGCCACGCccg
cctccgcctccgcctccgcctccgcctcGGCGTCGCCGAAGACACGCTCG
CCCCCCTCGCGCTCCACCCTGCGCGCCGTGCCGCGTCGCCACGAGGCGAG
CGAGGAGGCGCTAGACCTGCTGGCCAACACCGCCAGAAAGTACATCATCG
TGGGCGGCAAGGGCGGCGTCGGCAAGACGTCCATGTCTGCCGCCGTGGCC
ACTGCGTTTGCCGATCGCGGCCAGACAACGCTCATCGTTTCTACCGACCC
GGCGCACTCGCTGTCCGACGCGTTTGGGCAGAGCGTGTCGGGCGGCGACC
CGGTGCCCGTCATGGGCATCGATAACCTGTACGCGCAGGAAGTGGACCCG
AATTCGATGAAGGCGACGTTCAATATGATGCAGCAGATGGACGGCGCGCG
CGGCATGGAGGATATGGGGCTGGAAGATCTCAACTCGCTGTTTGAAACGA
TTCCGCCGGGCTTTGATGAGGCCGTGGCGCTGGTGGAGATTGTCAAGTAC
ATTGAGGCCGACGCCGAGTACGCCAAGTTTGACCGCATTGTGTTTGACAC
TGCGCCTACGGGCCACACGCTGCGACTACTGGCGCTGCCAGACTTTCTCA
ACGGGTTTTTCGGCAAGATGATCTCCATGAAGTCCAAGTTTGGCAACGTG
ATGAACCAGTTCAAGGGCATGTTTGGTGGGGGGGACGGCGGTATGGACAA
CTCTGTGGAAGACATGGAGGAGCTCAAGCGGTCGATGAACATGGTGCGGG
AGCTGTTTCGCGACGAGCTGCAAACGGAGTTCATCGTGGCCACAATCCCC
AACATGATGGCCATTGCCGAGTCGCGTCGGCTGCTGGACGAGCTCAACAA
GGAGAGCATCCCGGTGCGGCACGTGTTCGTGAATCAGGTGCAGCCGGAGA
ACGAGCAGTGCTCTTTCTGCGCGACGCGCTTCAAGGAGCAGCGCAACAAC
ATGCAGCTGCTGGAGCGCGAGTTTGCGGGGCTGCAGATCGCCACGGTGCA
GAGCTTCGACAAGGAGATCAAGGGCGCGGGCGCGCTGCGCGCCATGAGCG
CGCAGCTGTTCCCGCAAACGGCGGAAGAGGCGAGGGCGCGCGAGGCGGAc
gacggcgcgccgcgcgacgcgccgcgagatgcggcgacgccgccgccgcc
gcctccaccgccgccgccgtcggctccgcgcgcGAAGGCGGAGCTGGTGG
AATAG

protein sequence of Gvermi12793.t1

>Gvermi12793.t1 ID=Gvermi12793.t1|Name=Gvermi12793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=485bp
MLLGIPRVFGHRPKQQEIVETVQPAPTPPPLPPPDKQGPMQWAQAHPFQA
AAIISICITLIRRTIAVVSPPTAAAKPIKTATPASASASASASASPKTRS
PPSRSTLRAVPRRHEASEEALDLLANTARKYIIVGGKGGVGKTSMSAAVA
TAFADRGQTTLIVSTDPAHSLSDAFGQSVSGGDPVPVMGIDNLYAQEVDP
NSMKATFNMMQQMDGARGMEDMGLEDLNSLFETIPPGFDEAVALVEIVKY
IEADAEYAKFDRIVFDTAPTGHTLRLLALPDFLNGFFGKMISMKSKFGNV
MNQFKGMFGGGDGGMDNSVEDMEELKRSMNMVRELFRDELQTEFIVATIP
NMMAIAESRRLLDELNKESIPVRHVFVNQVQPENEQCSFCATRFKEQRNN
MQLLEREFAGLQIATVQSFDKEIKGAGALRAMSAQLFPQTAEEARAREAD
DGAPRDAPRDAATPPPPPPPPPPSAPRAKAELVE*

mRNA from alignment at ScGOVlb_425:1531970..1533424+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12793.t1 ID=Gvermi12793.t1|Name=Gvermi12793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1455bp|location=Sequence derived from alignment at ScGOVlb_425:1531970..1533424+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGCTCGGCATCCCGCGCGTGTTCGGCCATCGCCCCAAGCAACAGGA
AATCGTCGAGACCGTgcagccggcgcccacgccgccgccgctgccgcctc
cgGACAAGCAGGGCCCCATGCAGTGGGCCCAGGCCCACCCGTTTCAGGCC
GCCGCCATCATCTCCATCTGCATCACCCTCATACGCCGCACCATCGCCGT
CGTGTCGCCGCCCACCGCCGCCGCCAAGCCCATCAAGACCGCCACGCccg
cctccgcctccgcctccgcctccgcctcGGCGTCGCCGAAGACACGCTCG
CCCCCCTCGCGCTCCACCCTGCGCGCCGTGCCGCGTCGCCACGAGGCGAG
CGAGGAGGCGCTAGACCTGCTGGCCAACACCGCCAGAAAGTACATCATCG
TGGGCGGCAAGGGCGGCGTCGGCAAGACGTCCATGTCTGCCGCCGTGGCC
ACTGCGTTTGCCGATCGCGGCCAGACAACGCTCATCGTTTCTACCGACCC
GGCGCACTCGCTGTCCGACGCGTTTGGGCAGAGCGTGTCGGGCGGCGACC
CGGTGCCCGTCATGGGCATCGATAACCTGTACGCGCAGGAAGTGGACCCG
AATTCGATGAAGGCGACGTTCAATATGATGCAGCAGATGGACGGCGCGCG
CGGCATGGAGGATATGGGGCTGGAAGATCTCAACTCGCTGTTTGAAACGA
TTCCGCCGGGCTTTGATGAGGCCGTGGCGCTGGTGGAGATTGTCAAGTAC
ATTGAGGCCGACGCCGAGTACGCCAAGTTTGACCGCATTGTGTTTGACAC
TGCGCCTACGGGCCACACGCTGCGACTACTGGCGCTGCCAGACTTTCTCA
ACGGGTTTTTCGGCAAGATGATCTCCATGAAGTCCAAGTTTGGCAACGTG
ATGAACCAGTTCAAGGGCATGTTTGGTGGGGGGGACGGCGGTATGGACAA
CTCTGTGGAAGACATGGAGGAGCTCAAGCGGTCGATGAACATGGTGCGGG
AGCTGTTTCGCGACGAGCTGCAAACGGAGTTCATCGTGGCCACAATCCCC
AACATGATGGCCATTGCCGAGTCGCGTCGGCTGCTGGACGAGCTCAACAA
GGAGAGCATCCCGGTGCGGCACGTGTTCGTGAATCAGGTGCAGCCGGAGA
ACGAGCAGTGCTCTTTCTGCGCGACGCGCTTCAAGGAGCAGCGCAACAAC
ATGCAGCTGCTGGAGCGCGAGTTTGCGGGGCTGCAGATCGCCACGGTGCA
GAGCTTCGACAAGGAGATCAAGGGCGCGGGCGCGCTGCGCGCCATGAGCG
CGCAGCTGTTCCCGCAAACGGCGGAAGAGGCGAGGGCGCGCGAGGCGGAc
gacggcgcgccgcgcgacgcgccgcgagatgcggcgacgccgccgccgcc
gcctccaccgccgccgccgtcggctccgcgcgcGAAGGCGGAGCTGGTGG
AATAG

Coding sequence (CDS) from alignment at ScGOVlb_425:1531970..1533424+

>Gvermi12793.t1 ID=Gvermi12793.t1|Name=Gvermi12793.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1455bp|location=Sequence derived from alignment at ScGOVlb_425:1531970..1533424+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGCTCGGCATCCCGCGCGTGTTCGGCCATCGCCCCAAGCAACAGGA
AATCGTCGAGACCGTgcagccggcgcccacgccgccgccgctgccgcctc
cgGACAAGCAGGGCCCCATGCAGTGGGCCCAGGCCCACCCGTTTCAGGCC
GCCGCCATCATCTCCATCTGCATCACCCTCATACGCCGCACCATCGCCGT
CGTGTCGCCGCCCACCGCCGCCGCCAAGCCCATCAAGACCGCCACGCccg
cctccgcctccgcctccgcctccgcctcGGCGTCGCCGAAGACACGCTCG
CCCCCCTCGCGCTCCACCCTGCGCGCCGTGCCGCGTCGCCACGAGGCGAG
CGAGGAGGCGCTAGACCTGCTGGCCAACACCGCCAGAAAGTACATCATCG
TGGGCGGCAAGGGCGGCGTCGGCAAGACGTCCATGTCTGCCGCCGTGGCC
ACTGCGTTTGCCGATCGCGGCCAGACAACGCTCATCGTTTCTACCGACCC
GGCGCACTCGCTGTCCGACGCGTTTGGGCAGAGCGTGTCGGGCGGCGACC
CGGTGCCCGTCATGGGCATCGATAACCTGTACGCGCAGGAAGTGGACCCG
AATTCGATGAAGGCGACGTTCAATATGATGCAGCAGATGGACGGCGCGCG
CGGCATGGAGGATATGGGGCTGGAAGATCTCAACTCGCTGTTTGAAACGA
TTCCGCCGGGCTTTGATGAGGCCGTGGCGCTGGTGGAGATTGTCAAGTAC
ATTGAGGCCGACGCCGAGTACGCCAAGTTTGACCGCATTGTGTTTGACAC
TGCGCCTACGGGCCACACGCTGCGACTACTGGCGCTGCCAGACTTTCTCA
ACGGGTTTTTCGGCAAGATGATCTCCATGAAGTCCAAGTTTGGCAACGTG
ATGAACCAGTTCAAGGGCATGTTTGGTGGGGGGGACGGCGGTATGGACAA
CTCTGTGGAAGACATGGAGGAGCTCAAGCGGTCGATGAACATGGTGCGGG
AGCTGTTTCGCGACGAGCTGCAAACGGAGTTCATCGTGGCCACAATCCCC
AACATGATGGCCATTGCCGAGTCGCGTCGGCTGCTGGACGAGCTCAACAA
GGAGAGCATCCCGGTGCGGCACGTGTTCGTGAATCAGGTGCAGCCGGAGA
ACGAGCAGTGCTCTTTCTGCGCGACGCGCTTCAAGGAGCAGCGCAACAAC
ATGCAGCTGCTGGAGCGCGAGTTTGCGGGGCTGCAGATCGCCACGGTGCA
GAGCTTCGACAAGGAGATCAAGGGCGCGGGCGCGCTGCGCGCCATGAGCG
CGCAGCTGTTCCCGCAAACGGCGGAAGAGGCGAGGGCGCGCGAGGCGGAc
gacggcgcgccgcgcgacgcgccgcgagatgcggcgacgccgccgccgcc
gcctccaccgccgccgccgtcggctccgcgcgcGAAGGCGGAGCTGGTGG
AATAG