Gvermi12791.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12791.t1
Unique NameGvermi12791.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1528222..1528941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog604331.AUHY01000046_gene1816
PFAMsPribosyltran
Max annot lvl1297|Deinococcus-Thermus
KEGG koko:K07101
Evalue9.75e-43
EggNOG OGsCOG2236@1|root,COG2236@2|Bacteria,1WJRW@1297|Deinococcus-Thermus
DescriptionPhosphoribosyl transferase domain
COG categoryF
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12791Gvermi12791Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1528222..1528941 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12791.t1.stop1Gvermi12791.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1528222..1528224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12791.t1.CDS1Gvermi12791.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1528222..1528941 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12791.t1.exon1Gvermi12791.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1528222..1528941 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12791.t1.start1Gvermi12791.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1528939..1528941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12791.t1Gvermi12791.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1528222..1528941 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12791.t1 ID=Gvermi12791.t1|Name=Gvermi12791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=240bp
MQPCFVGFNSLGVCLSSSNRYLATSQSPRRCIGPSCPRISPKAVSSSNGA
MSTTPRRYERVSWPRVEAMCKDIAQQARDQRFDVVLAVTRGGLVPAVLLC
EQFGLRNILSATVMFYSDDGEQFFGMTEPRFLAFPSVDALQGRRVLIVDD
VWDSGRTAQAVRNRVMRARAKDAKVAVLHYKPGKNVFSGTEPDFYSAVTS
DWVVYPWERASPKTPHVSLEADQASTSTDTVDNPTSVNN*
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spliced messenger RNA

>Gvermi12791.t1 ID=Gvermi12791.t1|Name=Gvermi12791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=720bp|location=Sequence derived from alignment at ScGOVlb_425:1528222..1528941- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCTTGTTTCGTGGGCTTCAATTCACTTGGCGTTTGTTTGAGCTC
CTCTAATCGATACCTCGCCACCTCGCAGTCTCCTCGTCGCTGCATTGGAC
CGTCATGCCCTCGCATCTCCCCCAAGGCCGTGTCCTCGTCGAATGGCGCG
ATGTCAACCACACCGCGCCGCTACGAGAGGGTGAGCTGGCCCAGGGTGGA
AGCGATGTGCAAAGACATCGCACAGCAAGCGCGCGATCAAAGGTTTGACG
TCGTCCTAGCCGTCACAAGAGGCGGCCTTGTGCCGGCCGTTCTTCTGTGC
GAGCAGTTCGGACTGCGCAACATTCTCTCTGCCACTGTCATGTTCTACTC
CGACGACGGCGAACAGTTTTTTGGAATGACCGAACCGAGATTTTTGGCCT
TTCCAAGCGTCGATGCTCTGCAAGGAAGACGCGTGCTCATTGTGGATGAC
GTGTGGGACAGCGGACGTACCGCCCAAGCTGTTCGGAATCGCGTGATGCG
GGCGAGGGCCAAGGACGCCAAGGTGGCTGTTTTGCATTACAAGCCTGGGA
AGAACGTTTTCTCTGGCACTGAGCCAGACTTTTACTCTGCTGTGACAAGC
GATTGGGTCGTGTATCCTTGGGAGAGAGCGAGCCCGAAGACGCCTCACGT
CAGTTTGGAAGCTGATCAAGCTAGTACATCGACAGATACTGTCGATAACC
CGACATCGGTTAACAACTGA
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protein sequence of Gvermi12791.t1

>Gvermi12791.t1 ID=Gvermi12791.t1|Name=Gvermi12791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=240bp
MQPCFVGFNSLGVCLSSSNRYLATSQSPRRCIGPSCPRISPKAVSSSNGA
MSTTPRRYERVSWPRVEAMCKDIAQQARDQRFDVVLAVTRGGLVPAVLLC
EQFGLRNILSATVMFYSDDGEQFFGMTEPRFLAFPSVDALQGRRVLIVDD
VWDSGRTAQAVRNRVMRARAKDAKVAVLHYKPGKNVFSGTEPDFYSAVTS
DWVVYPWERASPKTPHVSLEADQASTSTDTVDNPTSVNN*
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mRNA from alignment at ScGOVlb_425:1528222..1528941-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12791.t1 ID=Gvermi12791.t1|Name=Gvermi12791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=720bp|location=Sequence derived from alignment at ScGOVlb_425:1528222..1528941- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACCTTGTTTCGTGGGCTTCAATTCACTTGGCGTTTGTTTGAGCTC
CTCTAATCGATACCTCGCCACCTCGCAGTCTCCTCGTCGCTGCATTGGAC
CGTCATGCCCTCGCATCTCCCCCAAGGCCGTGTCCTCGTCGAATGGCGCG
ATGTCAACCACACCGCGCCGCTACGAGAGGGTGAGCTGGCCCAGGGTGGA
AGCGATGTGCAAAGACATCGCACAGCAAGCGCGCGATCAAAGGTTTGACG
TCGTCCTAGCCGTCACAAGAGGCGGCCTTGTGCCGGCCGTTCTTCTGTGC
GAGCAGTTCGGACTGCGCAACATTCTCTCTGCCACTGTCATGTTCTACTC
CGACGACGGCGAACAGTTTTTTGGAATGACCGAACCGAGATTTTTGGCCT
TTCCAAGCGTCGATGCTCTGCAAGGAAGACGCGTGCTCATTGTGGATGAC
GTGTGGGACAGCGGACGTACCGCCCAAGCTGTTCGGAATCGCGTGATGCG
GGCGAGGGCCAAGGACGCCAAGGTGGCTGTTTTGCATTACAAGCCTGGGA
AGAACGTTTTCTCTGGCACTGAGCCAGACTTTTACTCTGCTGTGACAAGC
GATTGGGTCGTGTATCCTTGGGAGAGAGCGAGCCCGAAGACGCCTCACGT
CAGTTTGGAAGCTGATCAAGCTAGTACATCGACAGATACTGTCGATAACC
CGACATCGGTTAACAACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1528222..1528941-

>Gvermi12791.t1 ID=Gvermi12791.t1|Name=Gvermi12791.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=720bp|location=Sequence derived from alignment at ScGOVlb_425:1528222..1528941- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACCTTGTTTCGTGGGCTTCAATTCACTTGGCGTTTGTTTGAGCTC
CTCTAATCGATACCTCGCCACCTCGCAGTCTCCTCGTCGCTGCATTGGAC
CGTCATGCCCTCGCATCTCCCCCAAGGCCGTGTCCTCGTCGAATGGCGCG
ATGTCAACCACACCGCGCCGCTACGAGAGGGTGAGCTGGCCCAGGGTGGA
AGCGATGTGCAAAGACATCGCACAGCAAGCGCGCGATCAAAGGTTTGACG
TCGTCCTAGCCGTCACAAGAGGCGGCCTTGTGCCGGCCGTTCTTCTGTGC
GAGCAGTTCGGACTGCGCAACATTCTCTCTGCCACTGTCATGTTCTACTC
CGACGACGGCGAACAGTTTTTTGGAATGACCGAACCGAGATTTTTGGCCT
TTCCAAGCGTCGATGCTCTGCAAGGAAGACGCGTGCTCATTGTGGATGAC
GTGTGGGACAGCGGACGTACCGCCCAAGCTGTTCGGAATCGCGTGATGCG
GGCGAGGGCCAAGGACGCCAAGGTGGCTGTTTTGCATTACAAGCCTGGGA
AGAACGTTTTCTCTGGCACTGAGCCAGACTTTTACTCTGCTGTGACAAGC
GATTGGGTCGTGTATCCTTGGGAGAGAGCGAGCCCGAAGACGCCTCACGT
CAGTTTGGAAGCTGATCAAGCTAGTACATCGACAGATACTGTCGATAACC
CGACATCGGTTAACAACTGA
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