Gvermi12790.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12790.t1
Unique NameGvermi12790.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1527022..1527866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706265.1
PFAMsChloroa_b-bind
Max annot lvl2759|Eukaryota
KEGG koko:K08907
KEGG Pathwayko00196,map00196
Evalue7.78e-59
EggNOG OGs2CDPH@1|root,2SPER@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12790Gvermi12790Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1527022..1527866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12790.t1Gvermi12790.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1527022..1527866 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12790.t1.start1Gvermi12790.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1527022..1527024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12790.t1.CDS1Gvermi12790.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1527022..1527274 +
Gvermi12790.t1.CDS2Gvermi12790.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1527360..1527740 +
Gvermi12790.t1.CDS3Gvermi12790.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1527844..1527866 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12790.t1.exon1Gvermi12790.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1527022..1527274 +
Gvermi12790.t1.exon2Gvermi12790.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1527360..1527740 +
Gvermi12790.t1.exon3Gvermi12790.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1527844..1527866 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12790.t1.intron1Gvermi12790.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1527275..1527359 +
Gvermi12790.t1.intron2Gvermi12790.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1527741..1527843 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12790.t1.stop1Gvermi12790.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1527864..1527866 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12790.t1 ID=Gvermi12790.t1|Name=Gvermi12790.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=219bp
MFAFVSGFAGLPATRASTFTGKSFAVHHAPVRTARYTMEASKSVPFLPKP
AKLDGTLPGDVGFDPLGFSNAFDINFLREAEVKHGRICMLAIVGWVFPEA
VYHLPNEIYSATNPLYAVPKVGWLPAIQILLFIAACEAATSYKKVYEQKC
EDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMIAIGGAIHHALLTNV
GLVEQIKSGQWFGGYYVH*
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spliced messenger RNA

>Gvermi12790.t1 ID=Gvermi12790.t1|Name=Gvermi12790.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=657bp|location=Sequence derived from alignment at ScGOVlb_425:1527022..1527866+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCGTTTGTTTCTGGCTTTGCTGGTCTCCCGGCCACCCGTGCGTC
CACTTTCACCGGCAAGTCTTTCGCTGTGCACCATGCCCCTGTCAGAACTG
CCCGTTACACCATGGAAGCGAGCAAGTCGGTCCCGTTCTTGCCAAAGCCG
GCAAAACTTGATGGTACCCTACCCGGTGATGTTGGCTTCGATCCGCTCGG
CTTCTCTAATGCGTTTGACATCAATTTTCTTCGAGAAGCTGAAGTGAAGC
ACGGCCGTATTTGCATGCTTGCCATTGTTGGGTGGGTCTTCCCGGAAGCT
GTGTATCATCTGCCCAACGAAATTTACTCTGCCACAAATCCGCTTTATGC
AGTGCCAAAGGTTGGGTGGCTCCCGGCCATTCAGATTCTTCTCTTCATTG
CTGCGTGTGAAGCCGCTACCTCGTACAAAAAGGTGTACGAACAGAAATGT
GAGGACCCTGGCAACTATGGCTTCGACCCTCTCAACCTTGCGGGAACGCC
CGAGAAGAAGAAGCGCCAGCAAACCGCAGAGATTAAGAATGGTCGACTGG
CTATGATAGCGATCGGAGGAGCAATTCATCACGCGCTTCTCACAAACGTC
GGTCTAGTGGAACAAATCAAGTCTGGGCAGTGGTTCGGCGGGTACTACGT
CCATTAA
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protein sequence of Gvermi12790.t1

>Gvermi12790.t1 ID=Gvermi12790.t1|Name=Gvermi12790.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=219bp
MFAFVSGFAGLPATRASTFTGKSFAVHHAPVRTARYTMEASKSVPFLPKP
AKLDGTLPGDVGFDPLGFSNAFDINFLREAEVKHGRICMLAIVGWVFPEA
VYHLPNEIYSATNPLYAVPKVGWLPAIQILLFIAACEAATSYKKVYEQKC
EDPGNYGFDPLNLAGTPEKKKRQQTAEIKNGRLAMIAIGGAIHHALLTNV
GLVEQIKSGQWFGGYYVH*
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mRNA from alignment at ScGOVlb_425:1527022..1527866+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12790.t1 ID=Gvermi12790.t1|Name=Gvermi12790.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=845bp|location=Sequence derived from alignment at ScGOVlb_425:1527022..1527866+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTGCGTTTGTTTCTGGCTTTGCTGGTCTCCCGGCCACCCGTGCGTC
CACTTTCACCGGCAAGTCTTTCGCTGTGCACCATGCCCCTGTCAGAACTG
CCCGTTACACCATGGAAGCGAGCAAGTCGGTCCCGTTCTTGCCAAAGCCG
GCAAAACTTGATGGTACCCTACCCGGTGATGTTGGCTTCGATCCGCTCGG
CTTCTCTAATGCGTTTGACATCAATTTTCTTCGAGAAGCTGAAGTGAAGC
ACGGTATGTTATCCAGGTCCATCACGTGTTGCTGTTCCGCCCCGCCAATT
ACTAACTTGCGTAATTCTCACGTTCCCCCTAAACGCAGGCCGTATTTGCA
TGCTTGCCATTGTTGGGTGGGTCTTCCCGGAAGCTGTGTATCATCTGCCC
AACGAAATTTACTCTGCCACAAATCCGCTTTATGCAGTGCCAAAGGTTGG
GTGGCTCCCGGCCATTCAGATTCTTCTCTTCATTGCTGCGTGTGAAGCCG
CTACCTCGTACAAAAAGGTGTACGAACAGAAATGTGAGGACCCTGGCAAC
TATGGCTTCGACCCTCTCAACCTTGCGGGAACGCCCGAGAAGAAGAAGCG
CCAGCAAACCGCAGAGATTAAGAATGGTCGACTGGCTATGATAGCGATCG
GAGGAGCAATTCATCACGCGCTTCTCACAAACGTCGGTCTAGTGGAACAA
ATCAAGTCTGGGCAGTGGTGTAAGTTAAGCATTGCTTTTGCACGTTTGCT
TTCTGCCCAACAATCGATTACTGACTCGTTATCTTTTGCTTTTGCACTTC
TCATTCTCTATTTTCAAATCAGTCGGCGGGTACTACGTCCATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1527022..1527866+

>Gvermi12790.t1 ID=Gvermi12790.t1|Name=Gvermi12790.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=657bp|location=Sequence derived from alignment at ScGOVlb_425:1527022..1527866+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTGCGTTTGTTTCTGGCTTTGCTGGTCTCCCGGCCACCCGTGCGTC
CACTTTCACCGGCAAGTCTTTCGCTGTGCACCATGCCCCTGTCAGAACTG
CCCGTTACACCATGGAAGCGAGCAAGTCGGTCCCGTTCTTGCCAAAGCCG
GCAAAACTTGATGGTACCCTACCCGGTGATGTTGGCTTCGATCCGCTCGG
CTTCTCTAATGCGTTTGACATCAATTTTCTTCGAGAAGCTGAAGTGAAGC
ACGGCCGTATTTGCATGCTTGCCATTGTTGGGTGGGTCTTCCCGGAAGCT
GTGTATCATCTGCCCAACGAAATTTACTCTGCCACAAATCCGCTTTATGC
AGTGCCAAAGGTTGGGTGGCTCCCGGCCATTCAGATTCTTCTCTTCATTG
CTGCGTGTGAAGCCGCTACCTCGTACAAAAAGGTGTACGAACAGAAATGT
GAGGACCCTGGCAACTATGGCTTCGACCCTCTCAACCTTGCGGGAACGCC
CGAGAAGAAGAAGCGCCAGCAAACCGCAGAGATTAAGAATGGTCGACTGG
CTATGATAGCGATCGGAGGAGCAATTCATCACGCGCTTCTCACAAACGTC
GGTCTAGTGGAACAAATCAAGTCTGGGCAGTGGTTCGGCGGGTACTACGT
CCATTAA
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