Gvermi12789.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12789.t1
Unique NameGvermi12789.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length507
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1524436..1525956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1328313.DS2_18273
PFAMsBig_2,UnbV_ASPIC,VCBS
Max annot lvl1236|Gammaproteobacteria
Evalue8.87e-37
EggNOG OGsCOG2931@1|root,COG5492@1|root,COG2931@2|Bacteria,COG5492@2|Bacteria,1R7ZV@1224|Proteobacteria,1RPUG@1236|Gammaproteobacteria,464WY@72275|Alteromonadaceae
DescriptionASPIC and UnbV
COG categoryNQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12789Gvermi12789Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1524436..1525956 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12789.t1.start1Gvermi12789.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1524436..1524438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12789.t1.CDS1Gvermi12789.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1524436..1525956 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12789.t1.exon1Gvermi12789.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1524436..1525956 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12789.t1.stop1Gvermi12789.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1525954..1525956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12789.t1Gvermi12789.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1524436..1525956 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12789.t1 ID=Gvermi12789.t1|Name=Gvermi12789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=507bp
MAPYVLHTPYLLTFVLLVSALAQNTPSFTDVSTAVGLPNNPRKKYAGPTI
ADLDRDGRPDLIFCYHDDFFAEIFFNQPDSTFTKSPWRSWRDNHGIVPVP
VSVSTNNMRFTISTGGNFGRQPSSPGMFEVNPDRLVSNVSSAVESATGSG
RTAIFLDLSFSHTGFPDVLFLNAPSETTNSRQFGYENQFGQYKLRLPQGF
EADRNWYGSPIDVDNDRIMEVVTHYYMLAAYKLVAPWKFRDITDQIFPSG
VNRMGIVAIAEIDYDNDGDFDLYVARTKSSDLKWVYGDAFFYDYLLENVG
GRFVDATAKARIPRATLARGVTVADFNNDGWMDVFVTQYVEADIMLLNNG
DGTFTRVDGLISRPAQVRGDNAVAFDYDGDGRMDILSSQGDYHSEGKRGN
FKLFRNVMKLDRNRRYLKVRVGNSPDGVATPLHAVVTVVVGDGSRSMVQR
VGSPGAAVSRSYIETLHFGLGKFRSADSVSVTYTHGFTVTKAGGQAGSTV
VLGVLL*
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spliced messenger RNA

>Gvermi12789.t1 ID=Gvermi12789.t1|Name=Gvermi12789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_425:1524436..1525956+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCTTACGTACTTCACACTCCGTATTTGCTCACCTTTGTGCTGCT
TGTCTCCGCCCTTGCACAGAACACCCCTTCGTTTACCGACGTTTCCACAG
CAGTTGGATTGCCGAACAACCCTCGCAAAAAATACGCAGGTCCTACCATA
GCTGATCTTGATCGCGACGGTCGTCCAGATCTCATCTTTTGCTACCATGA
CGACTTTTTCGCCGAGATTTTTTTCAACCAACCAGACTCAACTTTCACAA
AGTCTCCCTGGCGATCATGGAGGGACAACCATGGCATCGTACCGGTCCCA
GTTTCAGTTTCCACCAACAACATGAGATTCACAATATCCACCGGGGGCAA
TTTCGGTCGACAGCCCTCGTCCCCGGGCATGTTTGAGGTCAACCCCGACC
GCCTGGTTTCCAACGTATCAAGTGCCGTTGAAAGCGCCACTGGTAGTGGC
AGAACCGCCATCTTTCTCGACCTGTCCTTTTCTCACACCGGCTTCCCCGA
CGTCCTTTTCTTGAACGCCCCGTCCGAGACCACAAACTCCCGTCAGTTTG
GCTACGAGAACCAGTTTGGACAGTACAAACTGCGCCTTCCGCAAGGCTTT
GAGGCCGATCGCAACTGGTACGGATCCCCCATCGACGTCGACAATGACCG
AATCATGGAAGTGGTCACGCACTACTACATGCTTGCCGCATACAAACTCG
TCGCCCCGTGGAAGTTTCGCGACATCACCGACCAAATATTTCCGTCCGGC
GTCAACCGAATGGGCATCGTGGCCATAGCCGAAATAGACTACGACAACGA
CGGAGACTTTGACCTGTACGTTGCCAGGACCAAGTCCAGCGACCTCAAGT
GGGTGTACGGCGACGCTTTTTTCTACGACTATCTGCTGGAAAACGTGGGA
GGCCGCTTTGTGGATGCCACTGCAAAGGCGCGCATACCGCGCGCAACGCT
GGCGCGAGGCGTCACCGTCGCCGACTTCAACAACGATGGATGGATGGATG
TGTTCGTCACGCAGTACGTCGAGGCGGACATTATGTTGCTCAACAACGGA
GACGGCACGTTCACAAGGGTGGACGGCCTCATCTCACGACCCGCCCAAGT
GCGCGGCGACAACGCCGTCGCTTTTGATTACGACGGCGACGGCCGCATGG
ACATTTTGTCCAGTCAGGGCGACTACCACTCGGAGGGAAAACGCGGCAAC
TTCAAGCTGTTTCGAAACGTCATGAAGCTCGATAGAAACCGCCGCTATCT
CAAAGTTCGCGTGGGCAACTCTCCGGACGGTGTGGCCACGCCGTTGCATG
CCGTTGTCACCGTGGTTGTCGGAGATGGAAGCCGAAGCATGGTGCAGCGA
GTGGGCTCGCCGGGAGCTGCTGTTTCGAGGTCTTACATCGAAACTCTGCA
CTTTGGACTCGGTAAGTTCAGGTCTGCCGATTCTGTTTCTGTAACCTACA
CGCACGGGTTCACGGTCACCAAAGCTGGTGGACAGGCAGGCAGCACCGTG
GTTCTCGGAGTCTTGCTCTAG
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protein sequence of Gvermi12789.t1

>Gvermi12789.t1 ID=Gvermi12789.t1|Name=Gvermi12789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=507bp
MAPYVLHTPYLLTFVLLVSALAQNTPSFTDVSTAVGLPNNPRKKYAGPTI
ADLDRDGRPDLIFCYHDDFFAEIFFNQPDSTFTKSPWRSWRDNHGIVPVP
VSVSTNNMRFTISTGGNFGRQPSSPGMFEVNPDRLVSNVSSAVESATGSG
RTAIFLDLSFSHTGFPDVLFLNAPSETTNSRQFGYENQFGQYKLRLPQGF
EADRNWYGSPIDVDNDRIMEVVTHYYMLAAYKLVAPWKFRDITDQIFPSG
VNRMGIVAIAEIDYDNDGDFDLYVARTKSSDLKWVYGDAFFYDYLLENVG
GRFVDATAKARIPRATLARGVTVADFNNDGWMDVFVTQYVEADIMLLNNG
DGTFTRVDGLISRPAQVRGDNAVAFDYDGDGRMDILSSQGDYHSEGKRGN
FKLFRNVMKLDRNRRYLKVRVGNSPDGVATPLHAVVTVVVGDGSRSMVQR
VGSPGAAVSRSYIETLHFGLGKFRSADSVSVTYTHGFTVTKAGGQAGSTV
VLGVLL*
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mRNA from alignment at ScGOVlb_425:1524436..1525956+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12789.t1 ID=Gvermi12789.t1|Name=Gvermi12789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at ScGOVlb_425:1524436..1525956+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCCTTACGTACTTCACACTCCGTATTTGCTCACCTTTGTGCTGCT
TGTCTCCGCCCTTGCACAGAACACCCCTTCGTTTACCGACGTTTCCACAG
CAGTTGGATTGCCGAACAACCCTCGCAAAAAATACGCAGGTCCTACCATA
GCTGATCTTGATCGCGACGGTCGTCCAGATCTCATCTTTTGCTACCATGA
CGACTTTTTCGCCGAGATTTTTTTCAACCAACCAGACTCAACTTTCACAA
AGTCTCCCTGGCGATCATGGAGGGACAACCATGGCATCGTACCGGTCCCA
GTTTCAGTTTCCACCAACAACATGAGATTCACAATATCCACCGGGGGCAA
TTTCGGTCGACAGCCCTCGTCCCCGGGCATGTTTGAGGTCAACCCCGACC
GCCTGGTTTCCAACGTATCAAGTGCCGTTGAAAGCGCCACTGGTAGTGGC
AGAACCGCCATCTTTCTCGACCTGTCCTTTTCTCACACCGGCTTCCCCGA
CGTCCTTTTCTTGAACGCCCCGTCCGAGACCACAAACTCCCGTCAGTTTG
GCTACGAGAACCAGTTTGGACAGTACAAACTGCGCCTTCCGCAAGGCTTT
GAGGCCGATCGCAACTGGTACGGATCCCCCATCGACGTCGACAATGACCG
AATCATGGAAGTGGTCACGCACTACTACATGCTTGCCGCATACAAACTCG
TCGCCCCGTGGAAGTTTCGCGACATCACCGACCAAATATTTCCGTCCGGC
GTCAACCGAATGGGCATCGTGGCCATAGCCGAAATAGACTACGACAACGA
CGGAGACTTTGACCTGTACGTTGCCAGGACCAAGTCCAGCGACCTCAAGT
GGGTGTACGGCGACGCTTTTTTCTACGACTATCTGCTGGAAAACGTGGGA
GGCCGCTTTGTGGATGCCACTGCAAAGGCGCGCATACCGCGCGCAACGCT
GGCGCGAGGCGTCACCGTCGCCGACTTCAACAACGATGGATGGATGGATG
TGTTCGTCACGCAGTACGTCGAGGCGGACATTATGTTGCTCAACAACGGA
GACGGCACGTTCACAAGGGTGGACGGCCTCATCTCACGACCCGCCCAAGT
GCGCGGCGACAACGCCGTCGCTTTTGATTACGACGGCGACGGCCGCATGG
ACATTTTGTCCAGTCAGGGCGACTACCACTCGGAGGGAAAACGCGGCAAC
TTCAAGCTGTTTCGAAACGTCATGAAGCTCGATAGAAACCGCCGCTATCT
CAAAGTTCGCGTGGGCAACTCTCCGGACGGTGTGGCCACGCCGTTGCATG
CCGTTGTCACCGTGGTTGTCGGAGATGGAAGCCGAAGCATGGTGCAGCGA
GTGGGCTCGCCGGGAGCTGCTGTTTCGAGGTCTTACATCGAAACTCTGCA
CTTTGGACTCGGTAAGTTCAGGTCTGCCGATTCTGTTTCTGTAACCTACA
CGCACGGGTTCACGGTCACCAAAGCTGGTGGACAGGCAGGCAGCACCGTG
GTTCTCGGAGTCTTGCTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1524436..1525956+

>Gvermi12789.t1 ID=Gvermi12789.t1|Name=Gvermi12789.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1521bp|location=Sequence derived from alignment at ScGOVlb_425:1524436..1525956+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCCCTTACGTACTTCACACTCCGTATTTGCTCACCTTTGTGCTGCT
TGTCTCCGCCCTTGCACAGAACACCCCTTCGTTTACCGACGTTTCCACAG
CAGTTGGATTGCCGAACAACCCTCGCAAAAAATACGCAGGTCCTACCATA
GCTGATCTTGATCGCGACGGTCGTCCAGATCTCATCTTTTGCTACCATGA
CGACTTTTTCGCCGAGATTTTTTTCAACCAACCAGACTCAACTTTCACAA
AGTCTCCCTGGCGATCATGGAGGGACAACCATGGCATCGTACCGGTCCCA
GTTTCAGTTTCCACCAACAACATGAGATTCACAATATCCACCGGGGGCAA
TTTCGGTCGACAGCCCTCGTCCCCGGGCATGTTTGAGGTCAACCCCGACC
GCCTGGTTTCCAACGTATCAAGTGCCGTTGAAAGCGCCACTGGTAGTGGC
AGAACCGCCATCTTTCTCGACCTGTCCTTTTCTCACACCGGCTTCCCCGA
CGTCCTTTTCTTGAACGCCCCGTCCGAGACCACAAACTCCCGTCAGTTTG
GCTACGAGAACCAGTTTGGACAGTACAAACTGCGCCTTCCGCAAGGCTTT
GAGGCCGATCGCAACTGGTACGGATCCCCCATCGACGTCGACAATGACCG
AATCATGGAAGTGGTCACGCACTACTACATGCTTGCCGCATACAAACTCG
TCGCCCCGTGGAAGTTTCGCGACATCACCGACCAAATATTTCCGTCCGGC
GTCAACCGAATGGGCATCGTGGCCATAGCCGAAATAGACTACGACAACGA
CGGAGACTTTGACCTGTACGTTGCCAGGACCAAGTCCAGCGACCTCAAGT
GGGTGTACGGCGACGCTTTTTTCTACGACTATCTGCTGGAAAACGTGGGA
GGCCGCTTTGTGGATGCCACTGCAAAGGCGCGCATACCGCGCGCAACGCT
GGCGCGAGGCGTCACCGTCGCCGACTTCAACAACGATGGATGGATGGATG
TGTTCGTCACGCAGTACGTCGAGGCGGACATTATGTTGCTCAACAACGGA
GACGGCACGTTCACAAGGGTGGACGGCCTCATCTCACGACCCGCCCAAGT
GCGCGGCGACAACGCCGTCGCTTTTGATTACGACGGCGACGGCCGCATGG
ACATTTTGTCCAGTCAGGGCGACTACCACTCGGAGGGAAAACGCGGCAAC
TTCAAGCTGTTTCGAAACGTCATGAAGCTCGATAGAAACCGCCGCTATCT
CAAAGTTCGCGTGGGCAACTCTCCGGACGGTGTGGCCACGCCGTTGCATG
CCGTTGTCACCGTGGTTGTCGGAGATGGAAGCCGAAGCATGGTGCAGCGA
GTGGGCTCGCCGGGAGCTGCTGTTTCGAGGTCTTACATCGAAACTCTGCA
CTTTGGACTCGGTAAGTTCAGGTCTGCCGATTCTGTTTCTGTAACCTACA
CGCACGGGTTCACGGTCACCAAAGCTGGTGGACAGGCAGGCAGCACCGTG
GTTCTCGGAGTCTTGCTCTAG
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