Gvermi12785.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12785.t1
Unique NameGvermi12785.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1512788..1513670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708465.1
Preferred nameARL1
PFAMsArf
Max annot lvl2759|Eukaryota
KEGG koko:K07942,ko:K07977
GOsGO:0000045,GO:0000139,GO:0000166,GO:0001505,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006403,GO:0006605,GO:0006623,GO:0006810,GO:0006836,GO:0006886,GO:0006892,GO:0006893,GO:0006897,GO:0006914,GO:0006950,GO:0006996,GO:0007029,GO:0007030,GO:0007033,GO:0007034,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007431,GO:0007444,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009404,GO:0009888,GO:0009987,GO:0010256,GO:0010517,GO:0010518,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019748,GO:0019904,GO:0022607,GO:0023052,GO:0023061,GO:0030234,GO:0030334,GO:0031090,GO:0031503,GO:0031584,GO:0031984,GO:0032258,GO:0032386,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0033036,GO:0033157,GO:0033227,GO:0033363,GO:0033365,GO:0033554,GO:0034067,GO:0034497,GO:0034613,GO:0034629,GO:0034976,GO:0035220,GO:0035272,GO:0035295,GO:0035639,GO:0036094,GO:0036465,GO:0040012,GO:0042147,GO:0042886,GO:0043001,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048488,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051270,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0060191,GO:0060193,GO:0060341,GO:0060429,GO:0060627,GO:0060628,GO:0061024,GO:0061919,GO:0061951,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070727,GO:0070861,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0072659,GO:0072665,GO:0072666,GO:0090087,GO:0090150,GO:0090158,GO:0097159,GO:0097367,GO:0098588,GO:0098657,GO:0098772,GO:0098791,GO:0098876,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:1901265,GO:1901363,GO:1903292,GO:1903827,GO:1905037,GO:1990778,GO:2000145
Evalue1.24e-82
EggNOG OGsCOG1100@1|root,KOG0072@2759|Eukaryota
DescriptionGTP binding
COG categoryK
BRITEko00000,ko04031,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12785Gvermi12785Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1512788..1513670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12785.t1Gvermi12785.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1512788..1513670 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12785.t1.stop1Gvermi12785.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1512788..1512790 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12785.t1.CDS1Gvermi12785.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1512788..1513164 -
Gvermi12785.t1.CDS2Gvermi12785.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1513266..1513292 -
Gvermi12785.t1.CDS3Gvermi12785.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1513425..1513484 -
Gvermi12785.t1.CDS4Gvermi12785.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1513589..1513670 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12785.t1.exon1Gvermi12785.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1512788..1513164 -
Gvermi12785.t1.exon2Gvermi12785.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1513266..1513292 -
Gvermi12785.t1.exon3Gvermi12785.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1513425..1513484 -
Gvermi12785.t1.exon4Gvermi12785.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1513589..1513670 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12785.t1.intron1Gvermi12785.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1513165..1513265 -
Gvermi12785.t1.intron2Gvermi12785.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1513293..1513424 -
Gvermi12785.t1.intron3Gvermi12785.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1513485..1513588 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12785.t1.start1Gvermi12785.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1513668..1513670 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12785.t1 ID=Gvermi12785.t1|Name=Gvermi12785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=182bp
MGAALSRLIASLFGDKEIRILILGLDNAGKTSILYRMKEGTFHSTVPTIG
FNAEQIEIGKLKAQVWDLGGQESIRPYWRSYYQEQEAVIFVVDSCDKNRM
QIAKRELMSIIEEDELKNAVVCVFANKQDMPEALAAAEIAEALGLSSIVD
KKWTIIPTSALRGDGLKEGFEWISEAVQSNA*
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spliced messenger RNA

>Gvermi12785.t1 ID=Gvermi12785.t1|Name=Gvermi12785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=546bp|location=Sequence derived from alignment at ScGOVlb_425:1512788..1513670- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCTGCCTTGTCTCGCTTGATAGCCTCTCTGTTCGGAGATAAGGA
GATTCGAATTCTCATTCTCGGCCTTGACAATGCGGGGAAAACATCAATAC
TATACCGGATGAAGGAGGGAACGTTTCATAGCACTGTACCGACGATTGGA
TTTAATGCGGAGCAAATCGAGATTGGCAAGCTAAAAGCTCAAGTGTGGGA
CTTGGGCGGACAAGAAAGCATCAGGCCGTACTGGAGATCGTATTATCAAG
AACAGGAGGCAGTAATATTTGTGGTTGACAGCTGCGACAAAAACCGAATG
CAAATCGCGAAGCGTGAGCTGATGAGTATCATAGAGGAGGACGAACTGAA
GAACGCGGTGGTTTGTGTTTTTGCAAACAAACAGGACATGCCAGAAGCTC
TCGCCGCGGCCGAGATCGCGGAAGCGCTGGGTCTGTCGTCGATTGTTGAC
AAGAAATGGACAATTATCCCAACAAGTGCACTCCGCGGTGATGGGTTGAA
GGAAGGCTTCGAGTGGATTTCAGAAGCCGTACAATCGAATGCATGA
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protein sequence of Gvermi12785.t1

>Gvermi12785.t1 ID=Gvermi12785.t1|Name=Gvermi12785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=182bp
MGAALSRLIASLFGDKEIRILILGLDNAGKTSILYRMKEGTFHSTVPTIG
FNAEQIEIGKLKAQVWDLGGQESIRPYWRSYYQEQEAVIFVVDSCDKNRM
QIAKRELMSIIEEDELKNAVVCVFANKQDMPEALAAAEIAEALGLSSIVD
KKWTIIPTSALRGDGLKEGFEWISEAVQSNA*
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mRNA from alignment at ScGOVlb_425:1512788..1513670-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12785.t1 ID=Gvermi12785.t1|Name=Gvermi12785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=883bp|location=Sequence derived from alignment at ScGOVlb_425:1512788..1513670- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGCTGCCTTGTCTCGCTTGATAGCCTCTCTGTTCGGAGATAAGGA
GATTCGAATTCTCATTCTCGGCCTTGACAATGGTATGTTTTCGGTCTCAA
TTTGTCTGCTTGGCTCTCGCTAACTGGAATTGTGTACCGCACGTTGTTTC
ACGCTCATGCGCATTGATTTGTTTCTCTCGTAATAGCGGGGAAAACATCA
ATACTATACCGGATGAAGGAGGGAACGTTTCATAGCACTGTACCGAGTAA
GTTATGCGTTCTACTCGCATGTGTGCAAAGGACCATCAACCAAAGCCTTT
GAAGCTTGCTTGTGAGCACAATCACTCACAGCTGTTGTCTCCTTTTTTTT
TTTTTTTTTGCTTCCCGGACGTTGACAGCGATTGGATTTAATGCGGAGCA
AATCGGTATGTTACGAAATAACTTGACGACCAAGAGCGTGCAGCAACAAA
TTGTATGTTGTTGGAGCTAACGATGGAGTACGTTTACGGCACCGCAAAAC
AAACAGAGATTGGCAAGCTAAAAGCTCAAGTGTGGGACTTGGGCGGACAA
GAAAGCATCAGGCCGTACTGGAGATCGTATTATCAAGAACAGGAGGCAGT
AATATTTGTGGTTGACAGCTGCGACAAAAACCGAATGCAAATCGCGAAGC
GTGAGCTGATGAGTATCATAGAGGAGGACGAACTGAAGAACGCGGTGGTT
TGTGTTTTTGCAAACAAACAGGACATGCCAGAAGCTCTCGCCGCGGCCGA
GATCGCGGAAGCGCTGGGTCTGTCGTCGATTGTTGACAAGAAATGGACAA
TTATCCCAACAAGTGCACTCCGCGGTGATGGGTTGAAGGAAGGCTTCGAG
TGGATTTCAGAAGCCGTACAATCGAATGCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1512788..1513670-

>Gvermi12785.t1 ID=Gvermi12785.t1|Name=Gvermi12785.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=546bp|location=Sequence derived from alignment at ScGOVlb_425:1512788..1513670- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGCTGCCTTGTCTCGCTTGATAGCCTCTCTGTTCGGAGATAAGGA
GATTCGAATTCTCATTCTCGGCCTTGACAATGCGGGGAAAACATCAATAC
TATACCGGATGAAGGAGGGAACGTTTCATAGCACTGTACCGACGATTGGA
TTTAATGCGGAGCAAATCGAGATTGGCAAGCTAAAAGCTCAAGTGTGGGA
CTTGGGCGGACAAGAAAGCATCAGGCCGTACTGGAGATCGTATTATCAAG
AACAGGAGGCAGTAATATTTGTGGTTGACAGCTGCGACAAAAACCGAATG
CAAATCGCGAAGCGTGAGCTGATGAGTATCATAGAGGAGGACGAACTGAA
GAACGCGGTGGTTTGTGTTTTTGCAAACAAACAGGACATGCCAGAAGCTC
TCGCCGCGGCCGAGATCGCGGAAGCGCTGGGTCTGTCGTCGATTGTTGAC
AAGAAATGGACAATTATCCCAACAAGTGCACTCCGCGGTGATGGGTTGAA
GGAAGGCTTCGAGTGGATTTCAGAAGCCGTACAATCGAATGCATGA
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