Gvermi12781.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12781.t1
Unique Name	Gvermi12781.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	643

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1504910..1506838 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	115417.EPrPW00000023304
PFAMs	PRMT5,PRMT5_C,PRMT5_TIM
Max annot lvl	121069\|Pythiales
Evalue	5.64e-195
EggNOG OGs	KOG0822@1\|root,KOG0822@2759\|Eukaryota,1MGAC@121069\|Pythiales
Description	Protein arginine N-methyltransferase
COG category	D

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12781	Gvermi12781	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1504910..1506838 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12781.t1.start1	Gvermi12781.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1504910..1504912 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12781.t1.CDS1	Gvermi12781.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1504910..1506838 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12781.t1.exon1	Gvermi12781.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1504910..1506838 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12781.t1.stop1	Gvermi12781.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1506836..1506838 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12781.t1	Gvermi12781.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1504910..1506838 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1504910..1506838+
coding sequence from alignment at ScGOVlb_425:1504910..1506838+

mRNA sequence

>Gvermi12781.t1 ID=Gvermi12781.t1|Name=Gvermi12781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=643bp
MVVTHPQTGQQLNIGLDCVAVPRLRDSLETADSSGCDFVIAPLVHPRYER
VNIHQSINSKTSVFSAAPPPIVRDDPLTRSDLELTSGEWMAGVVAKLSPW
IRLDSPNAMLRAASEAAFAEEIAFATHLSLKGLLLPPPNGGAQGVANLAR
CLSTALIQAPMLQLWIRLPVLDLPGKVPPFESDESASLQTDMEPWEVWNT
IRTFCGEHPNLGVALELTAELPQRPVLERWMAEPVKVVLLSTSSYVTNKV
GYPVLSRRHQDFIKMMFRMTPFFALTGRAHKVKGGDGYRPFVQYLAHLFG
KMPGTSEAETVEAPYYDYLQSPLQPLANNLGSQTYETFEKDPVKYAAYEE
AIRQCLEDHDYGKEKPVIMVVGAGRGPLVRSSLRAAEAVGVQVRVIAVEK
NPNAIVTLRNMRNEPGWEDVTVVAEDMRTMESSLQADILVSELLGSFGDN
ELSPECLDGANRLLKEGGVSIPCQYTSYLAPLSSTKLHNEVKAVSESVKE
METPYIVKIHRGKVLSETQPVFTFSHPNREAIIDNSRYAKLQFIMSETNV
VHGFAGYFETTLYKNIKLSINPPTFTEGMFSWFPMYIPIANPVYVQGGKT
LTAHIWRCVSNSRVWYEWCVSDPTVTPIHNPSGRSYSIGLRI*

spliced messenger RNA

>Gvermi12781.t1 ID=Gvermi12781.t1|Name=Gvermi12781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1929bp|location=Sequence derived from alignment at ScGOVlb_425:1504910..1506838+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTCACGCACCCGCAGACTGGGCAACAGCTCAACATCGGCCTGGA
CTGCGTTGCCGTCCCCCGTCTGCGCGACTCTCTGGAAACCGCGGATTCGT
CTGGCTGTGATTTCGTCATAGCCCCCCTCGTCCACCCCCGCTATGAGCGC
GTCAATATCCATCAGTCCATCAACTCCAAGACCTCTGTCTTCTCGGCCGC
ACCGCCGCCAATTGTACGCGATGACCCGCTCACGCGCTCCGATCTGGAGC
TCACGTCTGGCGAGTGGATGGCTGGCGTCGTGGCCAAACTCTCGCCGTGG
ATTCGCTTGGACAGCCCCAATGCCATGTTGCGTGCTGCCAGCGAGGCCGC
CTTCGCGGAAGAGATTGCTTTTGCCACTCACCTGTCGCTCAAGGGACTGC
TCCTGCCCCCTCCAAATGGCGGTGCGCAAGGCGTAGCCAATTTGGCAAGG
TGTTTGTCTACAGCATTAATCCAAGCGCCCATGCTTCAACTTTGGATTCG
CCTGCCTGTTCTAGATCTTCCGGGCAAAGTGCCTCCCTTTGAATCTGATG
AAAGCGCGTCGTTGCAAACGGACATGGAACCCTGGGAGGTATGGAACACC
ATACGCACGTTTTGTGGTGAACACCCAAACCTCGGCGTTGCGCTTGAGCT
CACGGCTGAGCTGCCCCAGAGGCCTGTTCTGGAAAGATGGATGGCAGAAC
CAGTTAAGGTTGTCTTGTTATCCACTTCATCTTATGTCACCAACAAGGTC
GGATATCCAGTACTATCGCGAAGGCATCAAGACTTCATCAAGATGATGTT
TCGCATGACACCGTTTTTTGCTCTCACTGGTCGTGCTCACAAGGTAAAGG
GTGGCGATGGCTACAGGCCTTTTGTCCAGTATCTTGCTCATCTGTTTGGA
AAGATGCCTGGTACTAGCGAGGCAGAAACTGTTGAAGCCCCTTATTATGA
CTACCTCCAGTCTCCCTTGCAGCCACTTGCGAACAATCTTGGAAGTCAGA
CATATGAAACATTTGAAAAGGATCCAGTCAAGTATGCTGCATATGAGGAA
GCCATCCGGCAGTGTTTAGAAGATCACGACTACGGAAAAGAAAAGCCCGT
GATCATGGTTGTTGGCGCCGGCAGAGGTCCTCTGGTCAGGAGTAGTTTGC
GAGCGGCAGAGGCTGTTGGAGTGCAGGTTAGAGTTATTGCTGTCGAAAAG
AATCCAAACGCCATCGTCACATTACGCAATATGCGAAACGAACCCGGCTG
GGAGGATGTCACTGTTGTGGCCGAAGATATGAGAACAATGGAGAGTTCAT
TGCAAGCTGATATTTTGGTCTCAGAGCTTCTGGGCTCGTTTGGAGACAAC
GAGCTTTCCCCAGAATGCCTTGACGGCGCTAATCGTTTGCTGAAGGAAGG
CGGCGTATCTATTCCATGCCAGTATACAAGTTATCTTGCACCACTTTCTT
CAACAAAACTGCACAATGAAGTTAAAGCGGTTAGTGAATCTGTGAAAGAA
ATGGAGACTCCTTACATTGTTAAAATTCATAGAGGGAAAGTGCTTTCTGA
GACCCAGCCGGTTTTCACATTCTCTCACCCCAATAGAGAAGCGATTATTG
ACAACTCGCGGTATGCCAAGCTACAGTTTATAATGTCGGAGACAAACGTT
GTTCACGGTTTTGCCGGTTATTTTGAAACCACTTTGTACAAGAATATTAA
GCTTTCCATTAACCCACCAACTTTCACCGAAGGAATGTTCTCGTGGTTCC
CCATGTACATTCCCATCGCAAACCCTGTTTATGTTCAAGGGGGCAAGACA
CTCACTGCTCATATTTGGAGATGCGTATCTAATTCAAGGGTTTGGTATGA
ATGGTGTGTAAGTGATCCCACCGTTACTCCAATACACAACCCTAGTGGTC
GATCTTACTCAATCGGATTGCGGATTTGA

protein sequence of Gvermi12781.t1

>Gvermi12781.t1 ID=Gvermi12781.t1|Name=Gvermi12781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=643bp
MVVTHPQTGQQLNIGLDCVAVPRLRDSLETADSSGCDFVIAPLVHPRYER
VNIHQSINSKTSVFSAAPPPIVRDDPLTRSDLELTSGEWMAGVVAKLSPW
IRLDSPNAMLRAASEAAFAEEIAFATHLSLKGLLLPPPNGGAQGVANLAR
CLSTALIQAPMLQLWIRLPVLDLPGKVPPFESDESASLQTDMEPWEVWNT
IRTFCGEHPNLGVALELTAELPQRPVLERWMAEPVKVVLLSTSSYVTNKV
GYPVLSRRHQDFIKMMFRMTPFFALTGRAHKVKGGDGYRPFVQYLAHLFG
KMPGTSEAETVEAPYYDYLQSPLQPLANNLGSQTYETFEKDPVKYAAYEE
AIRQCLEDHDYGKEKPVIMVVGAGRGPLVRSSLRAAEAVGVQVRVIAVEK
NPNAIVTLRNMRNEPGWEDVTVVAEDMRTMESSLQADILVSELLGSFGDN
ELSPECLDGANRLLKEGGVSIPCQYTSYLAPLSSTKLHNEVKAVSESVKE
METPYIVKIHRGKVLSETQPVFTFSHPNREAIIDNSRYAKLQFIMSETNV
VHGFAGYFETTLYKNIKLSINPPTFTEGMFSWFPMYIPIANPVYVQGGKT
LTAHIWRCVSNSRVWYEWCVSDPTVTPIHNPSGRSYSIGLRI*

mRNA from alignment at ScGOVlb_425:1504910..1506838+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12781.t1 ID=Gvermi12781.t1|Name=Gvermi12781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1929bp|location=Sequence derived from alignment at ScGOVlb_425:1504910..1506838+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGTCACGCACCCGCAGACTGGGCAACAGCTCAACATCGGCCTGGA
CTGCGTTGCCGTCCCCCGTCTGCGCGACTCTCTGGAAACCGCGGATTCGT
CTGGCTGTGATTTCGTCATAGCCCCCCTCGTCCACCCCCGCTATGAGCGC
GTCAATATCCATCAGTCCATCAACTCCAAGACCTCTGTCTTCTCGGCCGC
ACCGCCGCCAATTGTACGCGATGACCCGCTCACGCGCTCCGATCTGGAGC
TCACGTCTGGCGAGTGGATGGCTGGCGTCGTGGCCAAACTCTCGCCGTGG
ATTCGCTTGGACAGCCCCAATGCCATGTTGCGTGCTGCCAGCGAGGCCGC
CTTCGCGGAAGAGATTGCTTTTGCCACTCACCTGTCGCTCAAGGGACTGC
TCCTGCCCCCTCCAAATGGCGGTGCGCAAGGCGTAGCCAATTTGGCAAGG
TGTTTGTCTACAGCATTAATCCAAGCGCCCATGCTTCAACTTTGGATTCG
CCTGCCTGTTCTAGATCTTCCGGGCAAAGTGCCTCCCTTTGAATCTGATG
AAAGCGCGTCGTTGCAAACGGACATGGAACCCTGGGAGGTATGGAACACC
ATACGCACGTTTTGTGGTGAACACCCAAACCTCGGCGTTGCGCTTGAGCT
CACGGCTGAGCTGCCCCAGAGGCCTGTTCTGGAAAGATGGATGGCAGAAC
CAGTTAAGGTTGTCTTGTTATCCACTTCATCTTATGTCACCAACAAGGTC
GGATATCCAGTACTATCGCGAAGGCATCAAGACTTCATCAAGATGATGTT
TCGCATGACACCGTTTTTTGCTCTCACTGGTCGTGCTCACAAGGTAAAGG
GTGGCGATGGCTACAGGCCTTTTGTCCAGTATCTTGCTCATCTGTTTGGA
AAGATGCCTGGTACTAGCGAGGCAGAAACTGTTGAAGCCCCTTATTATGA
CTACCTCCAGTCTCCCTTGCAGCCACTTGCGAACAATCTTGGAAGTCAGA
CATATGAAACATTTGAAAAGGATCCAGTCAAGTATGCTGCATATGAGGAA
GCCATCCGGCAGTGTTTAGAAGATCACGACTACGGAAAAGAAAAGCCCGT
GATCATGGTTGTTGGCGCCGGCAGAGGTCCTCTGGTCAGGAGTAGTTTGC
GAGCGGCAGAGGCTGTTGGAGTGCAGGTTAGAGTTATTGCTGTCGAAAAG
AATCCAAACGCCATCGTCACATTACGCAATATGCGAAACGAACCCGGCTG
GGAGGATGTCACTGTTGTGGCCGAAGATATGAGAACAATGGAGAGTTCAT
TGCAAGCTGATATTTTGGTCTCAGAGCTTCTGGGCTCGTTTGGAGACAAC
GAGCTTTCCCCAGAATGCCTTGACGGCGCTAATCGTTTGCTGAAGGAAGG
CGGCGTATCTATTCCATGCCAGTATACAAGTTATCTTGCACCACTTTCTT
CAACAAAACTGCACAATGAAGTTAAAGCGGTTAGTGAATCTGTGAAAGAA
ATGGAGACTCCTTACATTGTTAAAATTCATAGAGGGAAAGTGCTTTCTGA
GACCCAGCCGGTTTTCACATTCTCTCACCCCAATAGAGAAGCGATTATTG
ACAACTCGCGGTATGCCAAGCTACAGTTTATAATGTCGGAGACAAACGTT
GTTCACGGTTTTGCCGGTTATTTTGAAACCACTTTGTACAAGAATATTAA
GCTTTCCATTAACCCACCAACTTTCACCGAAGGAATGTTCTCGTGGTTCC
CCATGTACATTCCCATCGCAAACCCTGTTTATGTTCAAGGGGGCAAGACA
CTCACTGCTCATATTTGGAGATGCGTATCTAATTCAAGGGTTTGGTATGA
ATGGTGTGTAAGTGATCCCACCGTTACTCCAATACACAACCCTAGTGGTC
GATCTTACTCAATCGGATTGCGGATTTGA

Coding sequence (CDS) from alignment at ScGOVlb_425:1504910..1506838+

>Gvermi12781.t1 ID=Gvermi12781.t1|Name=Gvermi12781.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1929bp|location=Sequence derived from alignment at ScGOVlb_425:1504910..1506838+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGTCACGCACCCGCAGACTGGGCAACAGCTCAACATCGGCCTGGA
CTGCGTTGCCGTCCCCCGTCTGCGCGACTCTCTGGAAACCGCGGATTCGT
CTGGCTGTGATTTCGTCATAGCCCCCCTCGTCCACCCCCGCTATGAGCGC
GTCAATATCCATCAGTCCATCAACTCCAAGACCTCTGTCTTCTCGGCCGC
ACCGCCGCCAATTGTACGCGATGACCCGCTCACGCGCTCCGATCTGGAGC
TCACGTCTGGCGAGTGGATGGCTGGCGTCGTGGCCAAACTCTCGCCGTGG
ATTCGCTTGGACAGCCCCAATGCCATGTTGCGTGCTGCCAGCGAGGCCGC
CTTCGCGGAAGAGATTGCTTTTGCCACTCACCTGTCGCTCAAGGGACTGC
TCCTGCCCCCTCCAAATGGCGGTGCGCAAGGCGTAGCCAATTTGGCAAGG
TGTTTGTCTACAGCATTAATCCAAGCGCCCATGCTTCAACTTTGGATTCG
CCTGCCTGTTCTAGATCTTCCGGGCAAAGTGCCTCCCTTTGAATCTGATG
AAAGCGCGTCGTTGCAAACGGACATGGAACCCTGGGAGGTATGGAACACC
ATACGCACGTTTTGTGGTGAACACCCAAACCTCGGCGTTGCGCTTGAGCT
CACGGCTGAGCTGCCCCAGAGGCCTGTTCTGGAAAGATGGATGGCAGAAC
CAGTTAAGGTTGTCTTGTTATCCACTTCATCTTATGTCACCAACAAGGTC
GGATATCCAGTACTATCGCGAAGGCATCAAGACTTCATCAAGATGATGTT
TCGCATGACACCGTTTTTTGCTCTCACTGGTCGTGCTCACAAGGTAAAGG
GTGGCGATGGCTACAGGCCTTTTGTCCAGTATCTTGCTCATCTGTTTGGA
AAGATGCCTGGTACTAGCGAGGCAGAAACTGTTGAAGCCCCTTATTATGA
CTACCTCCAGTCTCCCTTGCAGCCACTTGCGAACAATCTTGGAAGTCAGA
CATATGAAACATTTGAAAAGGATCCAGTCAAGTATGCTGCATATGAGGAA
GCCATCCGGCAGTGTTTAGAAGATCACGACTACGGAAAAGAAAAGCCCGT
GATCATGGTTGTTGGCGCCGGCAGAGGTCCTCTGGTCAGGAGTAGTTTGC
GAGCGGCAGAGGCTGTTGGAGTGCAGGTTAGAGTTATTGCTGTCGAAAAG
AATCCAAACGCCATCGTCACATTACGCAATATGCGAAACGAACCCGGCTG
GGAGGATGTCACTGTTGTGGCCGAAGATATGAGAACAATGGAGAGTTCAT
TGCAAGCTGATATTTTGGTCTCAGAGCTTCTGGGCTCGTTTGGAGACAAC
GAGCTTTCCCCAGAATGCCTTGACGGCGCTAATCGTTTGCTGAAGGAAGG
CGGCGTATCTATTCCATGCCAGTATACAAGTTATCTTGCACCACTTTCTT
CAACAAAACTGCACAATGAAGTTAAAGCGGTTAGTGAATCTGTGAAAGAA
ATGGAGACTCCTTACATTGTTAAAATTCATAGAGGGAAAGTGCTTTCTGA
GACCCAGCCGGTTTTCACATTCTCTCACCCCAATAGAGAAGCGATTATTG
ACAACTCGCGGTATGCCAAGCTACAGTTTATAATGTCGGAGACAAACGTT
GTTCACGGTTTTGCCGGTTATTTTGAAACCACTTTGTACAAGAATATTAA
GCTTTCCATTAACCCACCAACTTTCACCGAAGGAATGTTCTCGTGGTTCC
CCATGTACATTCCCATCGCAAACCCTGTTTATGTTCAAGGGGGCAAGACA
CTCACTGCTCATATTTGGAGATGCGTATCTAATTCAAGGGTTTGGTATGA
ATGGTGTGTAAGTGATCCCACCGTTACTCCAATACACAACCCTAGTGGTC
GATCTTACTCAATCGGATTGCGGATTTGA