Gvermi12779.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12779.t1
Unique NameGvermi12779.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1502522..1503307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123248.KB893321_gene561
Preferred namemenG
PFAMsUbie_methyltran
Max annot lvl976|Bacteroidetes
KEGG rclassRC00003,RC01253,RC01662
KEGG koko:K03183
KEGG ReactionR04990,R04993,R06859,R08774,R09736
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00116,M00117
Evalue9.57e-48
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,4NEDR@976|Bacteroidetes,1IQ48@117747|Sphingobacteriia
EC2.1.1.163,2.1.1.201
DescriptionMethyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2)
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12779Gvermi12779Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1502522..1503307 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12779.t1.start1Gvermi12779.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1502522..1502524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12779.t1.CDS1Gvermi12779.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1502522..1503307 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12779.t1.exon1Gvermi12779.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1502522..1503307 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12779.t1.stop1Gvermi12779.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1503305..1503307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12779.t1Gvermi12779.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1502522..1503307 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12779.t1 ID=Gvermi12779.t1|Name=Gvermi12779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=262bp
MRLSQTFMIAMVAALMCSVSCREKGDESCAIPGSGDFFDKIAARYDVLNQ
VISFGLHGSWRSSAIHKILPATSVLDVSTGTGDLAITLAANRSIRVVGLD
PSTEMLKIARLKANRFANSIGDLQLVEGVAEELPFESESFDAVAVAFGVR
NFQDTQKGLTEMGRVLKQGGRWVILEVGFTNGNSLREKVYRFFVSRMMPR
VAGFFSGNRDAYQYLSDSMQRFPGVERFTMMLEEAGLHVESQERLKPLGM
GPFLYSGNKSL*
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spliced messenger RNA

>Gvermi12779.t1 ID=Gvermi12779.t1|Name=Gvermi12779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=786bp|location=Sequence derived from alignment at ScGOVlb_425:1502522..1503307+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACTTTCTCAAACGTTTATGATCGCCATGGTCGCTGCACTGATGTG
CAGCGTGTCTTGTCGGGAAAAAGGAGACGAATCATGTGCAATACCCGGAT
CTGGCGATTTCTTTGACAAGATTGCGGCTCGTTACGATGTCCTCAATCAG
GTGATCTCTTTCGGACTTCACGGCAGCTGGAGGAGTTCTGCGATCCATAA
AATTCTGCCAGCAACATCCGTGTTGGACGTAAGCACGGGAACTGGAGATC
TAGCCATTACGCTGGCAGCAAATCGATCAATCCGAGTCGTCGGTCTGGAT
CCGTCGACGGAAATGCTGAAAATTGCTCGTCTCAAAGCAAATCGTTTTGC
AAACAGCATTGGCGACTTGCAACTAGTGGAAGGGGTTGCTGAGGAATTGC
CATTCGAGAGCGAGAGTTTCGACGCAGTGGCTGTAGCCTTTGGGGTTCGA
AATTTTCAAGATACTCAGAAGGGTCTTACGGAAATGGGGCGGGTTCTCAA
ACAGGGGGGAAGGTGGGTTATTCTAGAAGTAGGTTTCACTAACGGGAATA
GTCTTCGTGAGAAAGTATATCGCTTTTTCGTCTCCAGGATGATGCCAAGG
GTTGCTGGCTTCTTTTCAGGTAATCGCGATGCCTATCAATATTTGAGCGA
TTCAATGCAGAGATTTCCGGGAGTCGAGCGGTTTACGATGATGCTCGAGG
AAGCCGGATTGCACGTAGAATCACAAGAGCGACTGAAACCGTTGGGGATG
GGCCCTTTTCTCTACAGTGGTAACAAATCGCTATAA
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protein sequence of Gvermi12779.t1

>Gvermi12779.t1 ID=Gvermi12779.t1|Name=Gvermi12779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=262bp
MRLSQTFMIAMVAALMCSVSCREKGDESCAIPGSGDFFDKIAARYDVLNQ
VISFGLHGSWRSSAIHKILPATSVLDVSTGTGDLAITLAANRSIRVVGLD
PSTEMLKIARLKANRFANSIGDLQLVEGVAEELPFESESFDAVAVAFGVR
NFQDTQKGLTEMGRVLKQGGRWVILEVGFTNGNSLREKVYRFFVSRMMPR
VAGFFSGNRDAYQYLSDSMQRFPGVERFTMMLEEAGLHVESQERLKPLGM
GPFLYSGNKSL*
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mRNA from alignment at ScGOVlb_425:1502522..1503307+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12779.t1 ID=Gvermi12779.t1|Name=Gvermi12779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=786bp|location=Sequence derived from alignment at ScGOVlb_425:1502522..1503307+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGACTTTCTCAAACGTTTATGATCGCCATGGTCGCTGCACTGATGTG
CAGCGTGTCTTGTCGGGAAAAAGGAGACGAATCATGTGCAATACCCGGAT
CTGGCGATTTCTTTGACAAGATTGCGGCTCGTTACGATGTCCTCAATCAG
GTGATCTCTTTCGGACTTCACGGCAGCTGGAGGAGTTCTGCGATCCATAA
AATTCTGCCAGCAACATCCGTGTTGGACGTAAGCACGGGAACTGGAGATC
TAGCCATTACGCTGGCAGCAAATCGATCAATCCGAGTCGTCGGTCTGGAT
CCGTCGACGGAAATGCTGAAAATTGCTCGTCTCAAAGCAAATCGTTTTGC
AAACAGCATTGGCGACTTGCAACTAGTGGAAGGGGTTGCTGAGGAATTGC
CATTCGAGAGCGAGAGTTTCGACGCAGTGGCTGTAGCCTTTGGGGTTCGA
AATTTTCAAGATACTCAGAAGGGTCTTACGGAAATGGGGCGGGTTCTCAA
ACAGGGGGGAAGGTGGGTTATTCTAGAAGTAGGTTTCACTAACGGGAATA
GTCTTCGTGAGAAAGTATATCGCTTTTTCGTCTCCAGGATGATGCCAAGG
GTTGCTGGCTTCTTTTCAGGTAATCGCGATGCCTATCAATATTTGAGCGA
TTCAATGCAGAGATTTCCGGGAGTCGAGCGGTTTACGATGATGCTCGAGG
AAGCCGGATTGCACGTAGAATCACAAGAGCGACTGAAACCGTTGGGGATG
GGCCCTTTTCTCTACAGTGGTAACAAATCGCTATAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1502522..1503307+

>Gvermi12779.t1 ID=Gvermi12779.t1|Name=Gvermi12779.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=786bp|location=Sequence derived from alignment at ScGOVlb_425:1502522..1503307+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGACTTTCTCAAACGTTTATGATCGCCATGGTCGCTGCACTGATGTG
CAGCGTGTCTTGTCGGGAAAAAGGAGACGAATCATGTGCAATACCCGGAT
CTGGCGATTTCTTTGACAAGATTGCGGCTCGTTACGATGTCCTCAATCAG
GTGATCTCTTTCGGACTTCACGGCAGCTGGAGGAGTTCTGCGATCCATAA
AATTCTGCCAGCAACATCCGTGTTGGACGTAAGCACGGGAACTGGAGATC
TAGCCATTACGCTGGCAGCAAATCGATCAATCCGAGTCGTCGGTCTGGAT
CCGTCGACGGAAATGCTGAAAATTGCTCGTCTCAAAGCAAATCGTTTTGC
AAACAGCATTGGCGACTTGCAACTAGTGGAAGGGGTTGCTGAGGAATTGC
CATTCGAGAGCGAGAGTTTCGACGCAGTGGCTGTAGCCTTTGGGGTTCGA
AATTTTCAAGATACTCAGAAGGGTCTTACGGAAATGGGGCGGGTTCTCAA
ACAGGGGGGAAGGTGGGTTATTCTAGAAGTAGGTTTCACTAACGGGAATA
GTCTTCGTGAGAAAGTATATCGCTTTTTCGTCTCCAGGATGATGCCAAGG
GTTGCTGGCTTCTTTTCAGGTAATCGCGATGCCTATCAATATTTGAGCGA
TTCAATGCAGAGATTTCCGGGAGTCGAGCGGTTTACGATGATGCTCGAGG
AAGCCGGATTGCACGTAGAATCACAAGAGCGACTGAAACCGTTGGGGATG
GGCCCTTTTCTCTACAGTGGTAACAAATCGCTATAA
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