Gvermi12773.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12773.t1
Unique NameGvermi12773.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1474544..1476046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12773Gvermi12773Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1474544..1476046 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12773.t1.stop1Gvermi12773.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1474544..1474546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12773.t1.CDS1Gvermi12773.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1474544..1476046 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12773.t1.exon1Gvermi12773.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1474544..1476046 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12773.t1.start1Gvermi12773.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1476044..1476046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12773.t1Gvermi12773.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1474544..1476046 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12773.t1 ID=Gvermi12773.t1|Name=Gvermi12773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=501bp
MPDVSTTYAPQIPLSPLPSVALPKSASENKPIETDSLKPSEAELHKPADP
DTLKDHVSPQVAASPPIPGPQPASEPSTSTIAPSVVPPMPQTAAVDLQRD
AASTLPTVRSRSKNRPGRPPNINENSLMRRLECIMAVETSRMTMAEACTH
YDISPRTFYRWLRSKDRLIQLTGFTAEDFKNGPPPPERTALSDQIHRMPP
VNVADLRSNPPRISQPAIAAQAAAAAVARQPAPIAHKRRLPRVPLYSNVC
DDRGLRQSQMYHRNTTKMPSRTSAAADEQLSRLGNSTGLTRNKRPSMFSP
SNEMDVRDVNHMYHFSDPDEAPTTPNMGKRRRISRGDTVVLEETVEDDFE
ASVHPSRQFLSKGSAQVGANINGNVSHEQLLRQSSPEGTQTKVNLYPEAL
PAAASGIHEGFSRGMDLPQTHTSTQFIECSQKHKIEVVMGSKKVNLAWYH
GATSADIKEVIMRRFSLVSGTQWALVDKHHDEIIISDGIPNGRYHITVLP
*
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spliced messenger RNA

>Gvermi12773.t1 ID=Gvermi12773.t1|Name=Gvermi12773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at ScGOVlb_425:1474544..1476046- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGACGTGTCGACAACGTACGCACCGCAGATCCCCTTGTCGCCCCT
TCCATCCGTCGCCTTACCGAAGTCCGCATCCGAAAACAAGCCGATTGAAA
CAGACTCGCTCAAGCCGTCTGAGGCCGAACTCCATAAGCCAGCCGACCCC
GACACTCTCAAAGATCATGTGTCTCCGCAGGTCGCCGCCTCGCCGCCCAT
TCCTGGCCCTCAGCCTGCTTCTGAACCGTCCACATCCACCATAGCGCCCT
CCGTTGTACCGCCGATGCCCCAGACAGCGGCCGTCGACCTGCAACGAGAT
GCTGCATCGACATTACCCACCGTGCGTTCGCGCTCTAAGAACCGTCCCGG
CCGGCCTCCCAACATCAACGAAAATTCGCTCATGCGCAGATTGGAGTGCA
TCATGGCCGTCGAGACCTCCCGCATGACCATGGCGGAGGCCTGTACGCAC
TATGACATATCACCGCGCACCTTTTATCGCTGGCTACGAAGCAAGGACCG
TTTGATACAGCTCACCGGTTTCACGGCGGAAGACTTCAAGAACGGCCCGC
CGCCTCCTGAAAGGACAGCGCTTTCCGACCAGATTCACCGAATGCCCCCC
GTGAATGTTGCTGATTTGCGCTCAAACCCCCCTCGTATCTCGCAACCCGC
CATCGCTGCACAAGCTGCCGCCGCTGCCGTTGCACGCCAGCCCGCCCCCA
TCGCGCACAAACGTCGCCTGCCAAGAGTTCCGCTGTATTCAAACGTCTGC
GACGACAGGGGGCTCAGGCAAAGCCAGATGTATCATCGAAACACAACCAA
AATGCCCTCTCGGACCTCTGCAGCTGCTGATGAGCAACTCAGCAGGCTGG
GCAATAGCACGGGGCTGACGCGGAACAAGCGCCCGTCAATGTTTTCACCG
TCAAATGAAATGGATGTCCGCGACGTGAATCATATGTACCACTTTTCCGA
TCCCGATGAAGCTCCGACAACGCCCAACATGGGCAAGCGACGAAGGATCT
CTCGTGGTGATACAGTTGTGCTTGAGGAAACCGTGGAAGACGATTTCGAG
GCTTCTGTTCACCCCAGTCGCCAATTTCTCTCAAAAGGTTCTGCCCAAGT
AGGGGCAAACATCAACGGGAACGTCTCCCATGAGCAGTTGCTGCGCCAGT
CCTCACCAGAAGGTACGCAAACGAAAGTTAATCTCTACCCAGAAGCATTG
CCCGCTGCCGCAAGTGGAATTCATGAAGGCTTTTCTCGTGGCATGGATCT
GCCACAGACTCATACCTCTACACAATTTATCGAATGTAGTCAAAAACACA
AGATCGAAGTTGTAATGGGATCAAAGAAAGTCAATCTCGCTTGGTATCAT
GGAGCTACATCAGCTGATATCAAGGAGGTCATAATGCGCCGTTTTTCGCT
TGTTTCCGGTACGCAGTGGGCATTAGTGGACAAACACCACGATGAGATAA
TCATATCAGACGGGATTCCTAACGGGCGATATCATATTACAGTCTTACCG
TAG
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protein sequence of Gvermi12773.t1

>Gvermi12773.t1 ID=Gvermi12773.t1|Name=Gvermi12773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=501bp
MPDVSTTYAPQIPLSPLPSVALPKSASENKPIETDSLKPSEAELHKPADP
DTLKDHVSPQVAASPPIPGPQPASEPSTSTIAPSVVPPMPQTAAVDLQRD
AASTLPTVRSRSKNRPGRPPNINENSLMRRLECIMAVETSRMTMAEACTH
YDISPRTFYRWLRSKDRLIQLTGFTAEDFKNGPPPPERTALSDQIHRMPP
VNVADLRSNPPRISQPAIAAQAAAAAVARQPAPIAHKRRLPRVPLYSNVC
DDRGLRQSQMYHRNTTKMPSRTSAAADEQLSRLGNSTGLTRNKRPSMFSP
SNEMDVRDVNHMYHFSDPDEAPTTPNMGKRRRISRGDTVVLEETVEDDFE
ASVHPSRQFLSKGSAQVGANINGNVSHEQLLRQSSPEGTQTKVNLYPEAL
PAAASGIHEGFSRGMDLPQTHTSTQFIECSQKHKIEVVMGSKKVNLAWYH
GATSADIKEVIMRRFSLVSGTQWALVDKHHDEIIISDGIPNGRYHITVLP
*
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mRNA from alignment at ScGOVlb_425:1474544..1476046-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12773.t1 ID=Gvermi12773.t1|Name=Gvermi12773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at ScGOVlb_425:1474544..1476046- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCGACGTGTCGACAACGTACGCACCGCAGATCCCCTTGTCGCCCCT
TCCATCCGTCGCCTTACCGAAGTCCGCATCCGAAAACAAGCCGATTGAAA
CAGACTCGCTCAAGCCGTCTGAGGCCGAACTCCATAAGCCAGCCGACCCC
GACACTCTCAAAGATCATGTGTCTCCGCAGGTCGCCGCCTCGCCGCCCAT
TCCTGGCCCTCAGCCTGCTTCTGAACCGTCCACATCCACCATAGCGCCCT
CCGTTGTACCGCCGATGCCCCAGACAGCGGCCGTCGACCTGCAACGAGAT
GCTGCATCGACATTACCCACCGTGCGTTCGCGCTCTAAGAACCGTCCCGG
CCGGCCTCCCAACATCAACGAAAATTCGCTCATGCGCAGATTGGAGTGCA
TCATGGCCGTCGAGACCTCCCGCATGACCATGGCGGAGGCCTGTACGCAC
TATGACATATCACCGCGCACCTTTTATCGCTGGCTACGAAGCAAGGACCG
TTTGATACAGCTCACCGGTTTCACGGCGGAAGACTTCAAGAACGGCCCGC
CGCCTCCTGAAAGGACAGCGCTTTCCGACCAGATTCACCGAATGCCCCCC
GTGAATGTTGCTGATTTGCGCTCAAACCCCCCTCGTATCTCGCAACCCGC
CATCGCTGCACAAGCTGCCGCCGCTGCCGTTGCACGCCAGCCCGCCCCCA
TCGCGCACAAACGTCGCCTGCCAAGAGTTCCGCTGTATTCAAACGTCTGC
GACGACAGGGGGCTCAGGCAAAGCCAGATGTATCATCGAAACACAACCAA
AATGCCCTCTCGGACCTCTGCAGCTGCTGATGAGCAACTCAGCAGGCTGG
GCAATAGCACGGGGCTGACGCGGAACAAGCGCCCGTCAATGTTTTCACCG
TCAAATGAAATGGATGTCCGCGACGTGAATCATATGTACCACTTTTCCGA
TCCCGATGAAGCTCCGACAACGCCCAACATGGGCAAGCGACGAAGGATCT
CTCGTGGTGATACAGTTGTGCTTGAGGAAACCGTGGAAGACGATTTCGAG
GCTTCTGTTCACCCCAGTCGCCAATTTCTCTCAAAAGGTTCTGCCCAAGT
AGGGGCAAACATCAACGGGAACGTCTCCCATGAGCAGTTGCTGCGCCAGT
CCTCACCAGAAGGTACGCAAACGAAAGTTAATCTCTACCCAGAAGCATTG
CCCGCTGCCGCAAGTGGAATTCATGAAGGCTTTTCTCGTGGCATGGATCT
GCCACAGACTCATACCTCTACACAATTTATCGAATGTAGTCAAAAACACA
AGATCGAAGTTGTAATGGGATCAAAGAAAGTCAATCTCGCTTGGTATCAT
GGAGCTACATCAGCTGATATCAAGGAGGTCATAATGCGCCGTTTTTCGCT
TGTTTCCGGTACGCAGTGGGCATTAGTGGACAAACACCACGATGAGATAA
TCATATCAGACGGGATTCCTAACGGGCGATATCATATTACAGTCTTACCG
TAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1474544..1476046-

>Gvermi12773.t1 ID=Gvermi12773.t1|Name=Gvermi12773.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1503bp|location=Sequence derived from alignment at ScGOVlb_425:1474544..1476046- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCGACGTGTCGACAACGTACGCACCGCAGATCCCCTTGTCGCCCCT
TCCATCCGTCGCCTTACCGAAGTCCGCATCCGAAAACAAGCCGATTGAAA
CAGACTCGCTCAAGCCGTCTGAGGCCGAACTCCATAAGCCAGCCGACCCC
GACACTCTCAAAGATCATGTGTCTCCGCAGGTCGCCGCCTCGCCGCCCAT
TCCTGGCCCTCAGCCTGCTTCTGAACCGTCCACATCCACCATAGCGCCCT
CCGTTGTACCGCCGATGCCCCAGACAGCGGCCGTCGACCTGCAACGAGAT
GCTGCATCGACATTACCCACCGTGCGTTCGCGCTCTAAGAACCGTCCCGG
CCGGCCTCCCAACATCAACGAAAATTCGCTCATGCGCAGATTGGAGTGCA
TCATGGCCGTCGAGACCTCCCGCATGACCATGGCGGAGGCCTGTACGCAC
TATGACATATCACCGCGCACCTTTTATCGCTGGCTACGAAGCAAGGACCG
TTTGATACAGCTCACCGGTTTCACGGCGGAAGACTTCAAGAACGGCCCGC
CGCCTCCTGAAAGGACAGCGCTTTCCGACCAGATTCACCGAATGCCCCCC
GTGAATGTTGCTGATTTGCGCTCAAACCCCCCTCGTATCTCGCAACCCGC
CATCGCTGCACAAGCTGCCGCCGCTGCCGTTGCACGCCAGCCCGCCCCCA
TCGCGCACAAACGTCGCCTGCCAAGAGTTCCGCTGTATTCAAACGTCTGC
GACGACAGGGGGCTCAGGCAAAGCCAGATGTATCATCGAAACACAACCAA
AATGCCCTCTCGGACCTCTGCAGCTGCTGATGAGCAACTCAGCAGGCTGG
GCAATAGCACGGGGCTGACGCGGAACAAGCGCCCGTCAATGTTTTCACCG
TCAAATGAAATGGATGTCCGCGACGTGAATCATATGTACCACTTTTCCGA
TCCCGATGAAGCTCCGACAACGCCCAACATGGGCAAGCGACGAAGGATCT
CTCGTGGTGATACAGTTGTGCTTGAGGAAACCGTGGAAGACGATTTCGAG
GCTTCTGTTCACCCCAGTCGCCAATTTCTCTCAAAAGGTTCTGCCCAAGT
AGGGGCAAACATCAACGGGAACGTCTCCCATGAGCAGTTGCTGCGCCAGT
CCTCACCAGAAGGTACGCAAACGAAAGTTAATCTCTACCCAGAAGCATTG
CCCGCTGCCGCAAGTGGAATTCATGAAGGCTTTTCTCGTGGCATGGATCT
GCCACAGACTCATACCTCTACACAATTTATCGAATGTAGTCAAAAACACA
AGATCGAAGTTGTAATGGGATCAAAGAAAGTCAATCTCGCTTGGTATCAT
GGAGCTACATCAGCTGATATCAAGGAGGTCATAATGCGCCGTTTTTCGCT
TGTTTCCGGTACGCAGTGGGCATTAGTGGACAAACACCACGATGAGATAA
TCATATCAGACGGGATTCCTAACGGGCGATATCATATTACAGTCTTACCG
TAG
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