Gvermi12768.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12768.t1
Unique NameGvermi12768.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length559
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1458285..1459961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12768Gvermi12768Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1458285..1459961 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12768.t1.start1Gvermi12768.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1458285..1458287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12768.t1.CDS1Gvermi12768.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1458285..1459961 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12768.t1.exon1Gvermi12768.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1458285..1459961 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12768.t1.stop1Gvermi12768.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1459959..1459961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12768.t1Gvermi12768.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1458285..1459961 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12768.t1 ID=Gvermi12768.t1|Name=Gvermi12768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=559bp
MFASGRTKPELRAALDACDGRKLKAIISELPSCLPQSKDPLVIANCLEHV
RVAADVIIEACDYNTAFESAVSTRSALLSAKYVPWTVAVLNNFAFEERVV
SRVALTLSHLAGDAESRGLVGASGAVDQLAIAWKSHPSCIPIIQALISLT
AGHIDNISRLMRRRGITTAVNILKGPETARNTPLVEQTLILIGLCTICTP
DNYREGISLGPAIIDAINSANALDRVHVAKHAFRAIANIAECWTKENAGY
DLGDLHLLVERIITWWLSCPNSRDMAFAASWALAALCRHNKGVLEDIRRS
GHVAPALEKWRLNLRTVDSLANLLQNKNPDPPICTKSRSSSKRAKAMRNI
DDVRGSNSDTAKSESEVESDRSDLEGRINDPERSPVSVDLASVESNTIII
DSDSDDDHSPPLENTAEFVLHLEPTRIQSSSREFPATLDADSDDQTRALI
RKRPRTRSKKENHTSVDCQTIKRKRAASTGKEKVHHEDIAENHEDEMIGE
ESVRRSKRRRKPNSKYVSSPRQRPHPLSKTKQGAPPLVSFPFIVPQNGNC
EVVGRHQR*
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spliced messenger RNA

>Gvermi12768.t1 ID=Gvermi12768.t1|Name=Gvermi12768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1677bp|location=Sequence derived from alignment at ScGOVlb_425:1458285..1459961+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCCTCCGGTCGCACCAAGCCCGAATTGCGTGCTGCACTGGATGC
ATGCGATGGCCGAAAACTCAAAGCCATCATTTCTGAGTTACCTTCGTGTC
TCCCACAATCCAAAGATCCCCTTGTCATAGCTAACTGCCTCGAGCACGTG
CGAGTGGCCGCCGACGTTATCATCGAAGCCTGCGATTACAACACTGCTTT
TGAGAGCGCAGTCTCTACCCGCTCAGCTCTTCTTTCTGCAAAGTATGTGC
CATGGACCGTCGCTGTGCTCAACAATTTTGCTTTCGAGGAACGAGTCGTC
AGTCGTGTCGCTCTCACGCTCTCGCATTTGGCTGGTGATGCAGAATCTCG
TGGGCTCGTCGGCGCCTCAGGAGCCGTTGATCAACTTGCCATTGCTTGGA
AGAGTCATCCATCATGCATCCCAATAATCCAAGCGCTCATCTCACTCACT
GCCGGCCATATTGATAACATTTCGCGACTCATGAGACGGCGTGGGATCAC
TACAGCCGTGAACATCCTCAAGGGCCCAGAAACTGCACGGAATACACCGC
TTGTAGAGCAGACCCTCATCCTTATCGGTCTCTGCACAATTTGTACACCT
GATAACTATCGTGAAGGCATCTCACTTGGGCCAGCCATCATTGATGCTAT
CAACAGCGCCAATGCGCTAGATCGGGTTCATGTAGCGAAGCATGCATTCA
GAGCCATTGCGAATATAGCGGAATGTTGGACGAAGGAAAATGCAGGCTAT
GACCTTGGTGATCTCCATCTTTTGGTTGAACGCATCATCACCTGGTGGCT
ATCATGCCCTAACTCTCGAGACATGGCGTTCGCAGCTTCGTGGGCACTAG
CCGCTCTTTGTCGGCACAACAAAGGCGTCCTTGAAGATATCAGACGTTCC
GGGCATGTTGCACCCGCACTCGAGAAATGGAGGCTGAACCTGAGAACAGT
TGATTCTCTTGCAAACTTGTTGCAAAACAAGAATCCCGATCCACCGATCT
GTACTAAATCCCGTAGTTCATCCAAACGTGCAAAAGCGATGAGGAATATA
GATGATGTCCGAGGTTCGAATTCTGACACTGCCAAATCAGAATCTGAGGT
AGAGAGCGATCGCTCAGATCTCGAAGGGCGTATCAATGACCCAGAACGGT
CTCCTGTTTCCGTTGACTTGGCGTCTGTCGAGAGCAACACCATAATTATT
GACTCGGATTCCGACGACGATCACAGCCCTCCTCTGGAGAATACAGCAGA
ATTTGTCTTACATCTAGAGCCCACGAGAATACAATCGTCATCTCGTGAAT
TTCCTGCAACGCTGGATGCGGATTCTGACGACCAGACCAGGGCCCTAATC
AGGAAAAGACCCCGCACAAGATCGAAGAAAGAGAATCATACTTCGGTTGA
CTGCCAAACAATTAAAAGAAAACGCGCAGCAAGCACGGGAAAAGAAAAGG
TCCACCACGAGGACATTGCTGAAAACCACGAGGACGAAATGATTGGTGAA
GAGTCCGTGCGAAGGTCAAAGAGAAGAAGAAAGCCAAACTCAAAGTATGT
TTCTAGCCCGAGGCAAAGACCACACCCTCTGTCAAAGACCAAACAGGGAG
CACCACCACTTGTATCTTTCCCATTTATTGTTCCTCAGAATGGCAACTGC
GAAGTTGTGGGTCGTCATCAGCGGTAG
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protein sequence of Gvermi12768.t1

>Gvermi12768.t1 ID=Gvermi12768.t1|Name=Gvermi12768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=559bp
MFASGRTKPELRAALDACDGRKLKAIISELPSCLPQSKDPLVIANCLEHV
RVAADVIIEACDYNTAFESAVSTRSALLSAKYVPWTVAVLNNFAFEERVV
SRVALTLSHLAGDAESRGLVGASGAVDQLAIAWKSHPSCIPIIQALISLT
AGHIDNISRLMRRRGITTAVNILKGPETARNTPLVEQTLILIGLCTICTP
DNYREGISLGPAIIDAINSANALDRVHVAKHAFRAIANIAECWTKENAGY
DLGDLHLLVERIITWWLSCPNSRDMAFAASWALAALCRHNKGVLEDIRRS
GHVAPALEKWRLNLRTVDSLANLLQNKNPDPPICTKSRSSSKRAKAMRNI
DDVRGSNSDTAKSESEVESDRSDLEGRINDPERSPVSVDLASVESNTIII
DSDSDDDHSPPLENTAEFVLHLEPTRIQSSSREFPATLDADSDDQTRALI
RKRPRTRSKKENHTSVDCQTIKRKRAASTGKEKVHHEDIAENHEDEMIGE
ESVRRSKRRRKPNSKYVSSPRQRPHPLSKTKQGAPPLVSFPFIVPQNGNC
EVVGRHQR*
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mRNA from alignment at ScGOVlb_425:1458285..1459961+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12768.t1 ID=Gvermi12768.t1|Name=Gvermi12768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1677bp|location=Sequence derived from alignment at ScGOVlb_425:1458285..1459961+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCGCCTCCGGTCGCACCAAGCCCGAATTGCGTGCTGCACTGGATGC
ATGCGATGGCCGAAAACTCAAAGCCATCATTTCTGAGTTACCTTCGTGTC
TCCCACAATCCAAAGATCCCCTTGTCATAGCTAACTGCCTCGAGCACGTG
CGAGTGGCCGCCGACGTTATCATCGAAGCCTGCGATTACAACACTGCTTT
TGAGAGCGCAGTCTCTACCCGCTCAGCTCTTCTTTCTGCAAAGTATGTGC
CATGGACCGTCGCTGTGCTCAACAATTTTGCTTTCGAGGAACGAGTCGTC
AGTCGTGTCGCTCTCACGCTCTCGCATTTGGCTGGTGATGCAGAATCTCG
TGGGCTCGTCGGCGCCTCAGGAGCCGTTGATCAACTTGCCATTGCTTGGA
AGAGTCATCCATCATGCATCCCAATAATCCAAGCGCTCATCTCACTCACT
GCCGGCCATATTGATAACATTTCGCGACTCATGAGACGGCGTGGGATCAC
TACAGCCGTGAACATCCTCAAGGGCCCAGAAACTGCACGGAATACACCGC
TTGTAGAGCAGACCCTCATCCTTATCGGTCTCTGCACAATTTGTACACCT
GATAACTATCGTGAAGGCATCTCACTTGGGCCAGCCATCATTGATGCTAT
CAACAGCGCCAATGCGCTAGATCGGGTTCATGTAGCGAAGCATGCATTCA
GAGCCATTGCGAATATAGCGGAATGTTGGACGAAGGAAAATGCAGGCTAT
GACCTTGGTGATCTCCATCTTTTGGTTGAACGCATCATCACCTGGTGGCT
ATCATGCCCTAACTCTCGAGACATGGCGTTCGCAGCTTCGTGGGCACTAG
CCGCTCTTTGTCGGCACAACAAAGGCGTCCTTGAAGATATCAGACGTTCC
GGGCATGTTGCACCCGCACTCGAGAAATGGAGGCTGAACCTGAGAACAGT
TGATTCTCTTGCAAACTTGTTGCAAAACAAGAATCCCGATCCACCGATCT
GTACTAAATCCCGTAGTTCATCCAAACGTGCAAAAGCGATGAGGAATATA
GATGATGTCCGAGGTTCGAATTCTGACACTGCCAAATCAGAATCTGAGGT
AGAGAGCGATCGCTCAGATCTCGAAGGGCGTATCAATGACCCAGAACGGT
CTCCTGTTTCCGTTGACTTGGCGTCTGTCGAGAGCAACACCATAATTATT
GACTCGGATTCCGACGACGATCACAGCCCTCCTCTGGAGAATACAGCAGA
ATTTGTCTTACATCTAGAGCCCACGAGAATACAATCGTCATCTCGTGAAT
TTCCTGCAACGCTGGATGCGGATTCTGACGACCAGACCAGGGCCCTAATC
AGGAAAAGACCCCGCACAAGATCGAAGAAAGAGAATCATACTTCGGTTGA
CTGCCAAACAATTAAAAGAAAACGCGCAGCAAGCACGGGAAAAGAAAAGG
TCCACCACGAGGACATTGCTGAAAACCACGAGGACGAAATGATTGGTGAA
GAGTCCGTGCGAAGGTCAAAGAGAAGAAGAAAGCCAAACTCAAAGTATGT
TTCTAGCCCGAGGCAAAGACCACACCCTCTGTCAAAGACCAAACAGGGAG
CACCACCACTTGTATCTTTCCCATTTATTGTTCCTCAGAATGGCAACTGC
GAAGTTGTGGGTCGTCATCAGCGGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1458285..1459961+

>Gvermi12768.t1 ID=Gvermi12768.t1|Name=Gvermi12768.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1677bp|location=Sequence derived from alignment at ScGOVlb_425:1458285..1459961+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCGCCTCCGGTCGCACCAAGCCCGAATTGCGTGCTGCACTGGATGC
ATGCGATGGCCGAAAACTCAAAGCCATCATTTCTGAGTTACCTTCGTGTC
TCCCACAATCCAAAGATCCCCTTGTCATAGCTAACTGCCTCGAGCACGTG
CGAGTGGCCGCCGACGTTATCATCGAAGCCTGCGATTACAACACTGCTTT
TGAGAGCGCAGTCTCTACCCGCTCAGCTCTTCTTTCTGCAAAGTATGTGC
CATGGACCGTCGCTGTGCTCAACAATTTTGCTTTCGAGGAACGAGTCGTC
AGTCGTGTCGCTCTCACGCTCTCGCATTTGGCTGGTGATGCAGAATCTCG
TGGGCTCGTCGGCGCCTCAGGAGCCGTTGATCAACTTGCCATTGCTTGGA
AGAGTCATCCATCATGCATCCCAATAATCCAAGCGCTCATCTCACTCACT
GCCGGCCATATTGATAACATTTCGCGACTCATGAGACGGCGTGGGATCAC
TACAGCCGTGAACATCCTCAAGGGCCCAGAAACTGCACGGAATACACCGC
TTGTAGAGCAGACCCTCATCCTTATCGGTCTCTGCACAATTTGTACACCT
GATAACTATCGTGAAGGCATCTCACTTGGGCCAGCCATCATTGATGCTAT
CAACAGCGCCAATGCGCTAGATCGGGTTCATGTAGCGAAGCATGCATTCA
GAGCCATTGCGAATATAGCGGAATGTTGGACGAAGGAAAATGCAGGCTAT
GACCTTGGTGATCTCCATCTTTTGGTTGAACGCATCATCACCTGGTGGCT
ATCATGCCCTAACTCTCGAGACATGGCGTTCGCAGCTTCGTGGGCACTAG
CCGCTCTTTGTCGGCACAACAAAGGCGTCCTTGAAGATATCAGACGTTCC
GGGCATGTTGCACCCGCACTCGAGAAATGGAGGCTGAACCTGAGAACAGT
TGATTCTCTTGCAAACTTGTTGCAAAACAAGAATCCCGATCCACCGATCT
GTACTAAATCCCGTAGTTCATCCAAACGTGCAAAAGCGATGAGGAATATA
GATGATGTCCGAGGTTCGAATTCTGACACTGCCAAATCAGAATCTGAGGT
AGAGAGCGATCGCTCAGATCTCGAAGGGCGTATCAATGACCCAGAACGGT
CTCCTGTTTCCGTTGACTTGGCGTCTGTCGAGAGCAACACCATAATTATT
GACTCGGATTCCGACGACGATCACAGCCCTCCTCTGGAGAATACAGCAGA
ATTTGTCTTACATCTAGAGCCCACGAGAATACAATCGTCATCTCGTGAAT
TTCCTGCAACGCTGGATGCGGATTCTGACGACCAGACCAGGGCCCTAATC
AGGAAAAGACCCCGCACAAGATCGAAGAAAGAGAATCATACTTCGGTTGA
CTGCCAAACAATTAAAAGAAAACGCGCAGCAAGCACGGGAAAAGAAAAGG
TCCACCACGAGGACATTGCTGAAAACCACGAGGACGAAATGATTGGTGAA
GAGTCCGTGCGAAGGTCAAAGAGAAGAAGAAAGCCAAACTCAAAGTATGT
TTCTAGCCCGAGGCAAAGACCACACCCTCTGTCAAAGACCAAACAGGGAG
CACCACCACTTGTATCTTTCCCATTTATTGTTCCTCAGAATGGCAACTGC
GAAGTTGTGGGTCGTCATCAGCGGTAG
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