Gvermi12766.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12766.t1
Unique NameGvermi12766.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1451585..1452205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog395961.Cyan7425_1432
Preferred namenblB
PFAMsHEAT_2,HEAT_PBS
Max annot lvl1117|Cyanobacteria
Evalue2.44e-28
EggNOG OGsCOG1413@1|root,COG1413@2|Bacteria,1G341@1117|Cyanobacteria,3KGXR@43988|Cyanothece
DescriptionPFAM PBS lyase HEAT domain protein repeat-containing protein
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12766Gvermi12766Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1451585..1452205 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12766.t1.stop1Gvermi12766.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1451585..1451587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12766.t1.CDS1Gvermi12766.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1451585..1452205 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12766.t1.exon1Gvermi12766.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1451585..1452205 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12766.t1.start1Gvermi12766.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1452203..1452205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12766.t1Gvermi12766.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1451585..1452205 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12766.t1 ID=Gvermi12766.t1|Name=Gvermi12766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=207bp
MSSASTVREMLVSNDSLQRIRGINRASELSSTSEIVSALVPIASEDANQQ
VRYVAISRLSSLDPSSLSEEDKQTLLTAARYILVNDGESSCQAGAADMIA
GLRLLAGFDDLISTFNTTSDWMLKFSIAAGMGEMGDPKAFDFLVSVLDTE
SEESFLLVSAAIGSLGELGDERALPIIERYLNSEEKSIKERAVIAHEMLM
KSRNSS*
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spliced messenger RNA

>Gvermi12766.t1 ID=Gvermi12766.t1|Name=Gvermi12766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=621bp|location=Sequence derived from alignment at ScGOVlb_425:1451585..1452205- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAGTGCATCTACCGTAAGGGAGATGTTGGTATCAAACGATTCCCT
GCAGCGTATACGCGGAATAAACCGCGCTTCTGAACTGAGTTCAACATCGG
AAATAGTCTCGGCGCTGGTTCCCATTGCTAGTGAAGATGCCAATCAACAA
GTGCGATACGTCGCTATATCTCGTCTCTCAAGCTTGGACCCATCATCACT
ATCGGAGGAAGACAAGCAAACTTTACTCACGGCAGCGAGGTATATATTAG
TCAACGACGGGGAATCATCATGTCAGGCAGGCGCGGCTGATATGATTGCC
GGATTACGACTCTTAGCGGGATTCGATGATTTAATATCAACATTCAATAC
AACATCAGACTGGATGCTGAAATTCAGCATCGCTGCTGGTATGGGTGAAA
TGGGGGACCCGAAGGCGTTCGACTTCTTGGTATCAGTTCTGGATACTGAG
TCTGAAGAGAGTTTCTTGTTGGTTTCAGCAGCAATCGGATCTCTCGGTGA
ACTTGGAGATGAGAGGGCCCTTCCAATTATCGAGCGATATTTGAACAGTG
AAGAGAAGTCCATCAAGGAGCGAGCAGTAATTGCACACGAAATGCTCATG
AAGAGCAGGAACTCTAGTTAG
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protein sequence of Gvermi12766.t1

>Gvermi12766.t1 ID=Gvermi12766.t1|Name=Gvermi12766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=207bp
MSSASTVREMLVSNDSLQRIRGINRASELSSTSEIVSALVPIASEDANQQ
VRYVAISRLSSLDPSSLSEEDKQTLLTAARYILVNDGESSCQAGAADMIA
GLRLLAGFDDLISTFNTTSDWMLKFSIAAGMGEMGDPKAFDFLVSVLDTE
SEESFLLVSAAIGSLGELGDERALPIIERYLNSEEKSIKERAVIAHEMLM
KSRNSS*
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mRNA from alignment at ScGOVlb_425:1451585..1452205-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12766.t1 ID=Gvermi12766.t1|Name=Gvermi12766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=621bp|location=Sequence derived from alignment at ScGOVlb_425:1451585..1452205- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAAGTGCATCTACCGTAAGGGAGATGTTGGTATCAAACGATTCCCT
GCAGCGTATACGCGGAATAAACCGCGCTTCTGAACTGAGTTCAACATCGG
AAATAGTCTCGGCGCTGGTTCCCATTGCTAGTGAAGATGCCAATCAACAA
GTGCGATACGTCGCTATATCTCGTCTCTCAAGCTTGGACCCATCATCACT
ATCGGAGGAAGACAAGCAAACTTTACTCACGGCAGCGAGGTATATATTAG
TCAACGACGGGGAATCATCATGTCAGGCAGGCGCGGCTGATATGATTGCC
GGATTACGACTCTTAGCGGGATTCGATGATTTAATATCAACATTCAATAC
AACATCAGACTGGATGCTGAAATTCAGCATCGCTGCTGGTATGGGTGAAA
TGGGGGACCCGAAGGCGTTCGACTTCTTGGTATCAGTTCTGGATACTGAG
TCTGAAGAGAGTTTCTTGTTGGTTTCAGCAGCAATCGGATCTCTCGGTGA
ACTTGGAGATGAGAGGGCCCTTCCAATTATCGAGCGATATTTGAACAGTG
AAGAGAAGTCCATCAAGGAGCGAGCAGTAATTGCACACGAAATGCTCATG
AAGAGCAGGAACTCTAGTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1451585..1452205-

>Gvermi12766.t1 ID=Gvermi12766.t1|Name=Gvermi12766.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=621bp|location=Sequence derived from alignment at ScGOVlb_425:1451585..1452205- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAAGTGCATCTACCGTAAGGGAGATGTTGGTATCAAACGATTCCCT
GCAGCGTATACGCGGAATAAACCGCGCTTCTGAACTGAGTTCAACATCGG
AAATAGTCTCGGCGCTGGTTCCCATTGCTAGTGAAGATGCCAATCAACAA
GTGCGATACGTCGCTATATCTCGTCTCTCAAGCTTGGACCCATCATCACT
ATCGGAGGAAGACAAGCAAACTTTACTCACGGCAGCGAGGTATATATTAG
TCAACGACGGGGAATCATCATGTCAGGCAGGCGCGGCTGATATGATTGCC
GGATTACGACTCTTAGCGGGATTCGATGATTTAATATCAACATTCAATAC
AACATCAGACTGGATGCTGAAATTCAGCATCGCTGCTGGTATGGGTGAAA
TGGGGGACCCGAAGGCGTTCGACTTCTTGGTATCAGTTCTGGATACTGAG
TCTGAAGAGAGTTTCTTGTTGGTTTCAGCAGCAATCGGATCTCTCGGTGA
ACTTGGAGATGAGAGGGCCCTTCCAATTATCGAGCGATATTTGAACAGTG
AAGAGAAGTCCATCAAGGAGCGAGCAGTAATTGCACACGAAATGCTCATG
AAGAGCAGGAACTCTAGTTAG
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