Gvermi12763.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12763.t1
Unique Name	Gvermi12763.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	765

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1416039..1418333 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMQ125CT
PFAMs	PAH,Sin3_corepress,Sin3a_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11644
KEGG Pathway	ko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
Evalue	2.2e-17
EggNOG OGs	COG5602@1\|root,KOG4204@2759\|Eukaryota
Description	histone deacetylation
COG category	B
BRITE	ko00000,ko00001,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12763	Gvermi12763	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1416039..1418333 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12763.t1.start1	Gvermi12763.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1416039..1416041 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12763.t1.CDS1	Gvermi12763.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1416039..1418333 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12763.t1.exon1	Gvermi12763.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1416039..1418333 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12763.t1.stop1	Gvermi12763.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1418331..1418333 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12763.t1	Gvermi12763.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1416039..1418333 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1416039..1418333+
coding sequence from alignment at ScGOVlb_425:1416039..1418333+

mRNA sequence

>Gvermi12763.t1 ID=Gvermi12763.t1|Name=Gvermi12763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=765bp
LGRNAATPELEFFEELRSLLGPQGQRNYSEFIKCLSLFSQRIISAEELMR
LADGLLGDRQPLTDAFCAFINQTDPNSTQTAVEILRRAKTSTDGATDGAE
DKDAPMPQADSALTGERSHDRAPSGSLPPPSSVSGGSRSPKVNPRYKGKT
LTEIGKEHGAAVEEPGSYVALPSDFVPMQCSGMTETDRSVLNETYVSKGD
TVGRHLLDDDFKKVQGSGEKAHHGASGEKPPLPRTRASLLSEGHGSPRAV
KHAHYSPPLSVEDQRAEIELMVSRTRSTIEKMEKIQNGGLRVSELSAVDV
KPIELVYRDAAFEILEVMRSNPVATAAVVGKRLKQRLVDWLESKKHLELV
WKSKRFARRDATSDVPRTWKRSEMVRDLVGGSKKRCSEGSEGCKSREATK
TVCVDLVCRDSNLRVICDLLWYAFEWEAENEEEADKGLEFIEKTYHMVQK
ACSSSRVVYVDEYLYAYIRLIAEMSKRVEFLLEQRDGGVALEKLLDCVKE
VLGGSVSALEYDEVCEEVFDGVDDWEEHVCDFPLICKRLAECALSMPWRK
AGCELLEHARASLNAHGMDAKEQGGALRSSGGQGAMNDGDGEGEKGRRVS
DGDEAEKRWKELWRARQVVEAGGGHLVALKVRRVGDETASKTLRVAFRVL
SKDEACHYRSVRWADGGAEKKVVSNLTKYLKRARKRKRCMELENEGRVDS
ARDVYIVDNLDVRVDEDTGCVKYVSGTEDFLMNRNFKRRKVACKLRRCFA
GGGGVAEAMAVSVS*

spliced messenger RNA

>Gvermi12763.t1 ID=Gvermi12763.t1|Name=Gvermi12763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2295bp|location=Sequence derived from alignment at ScGOVlb_425:1416039..1418333+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGGCCGCAATGCAGCCACTCCCGAACTGGAGTTCTTCGAGGAACTGCG
CAGCCTGCTTGGACCACAAGGGCAGCGCAATTATTCTGAGTTTATCAAGT
GTCTATCACTGTTCTCGCAGCGAATTATTTCTGCCGAAGAACTGATGCGC
CTCGCTGATGGTCTTCTTGGGGATAGACAACCGTTGACGGATGCCTTTTG
CGCGTTCATCAATCAGACGGATCCGAATTCAACCCAAACGGCTGTCGAGA
TTCTTAGACGAGCTAAGACGTCGACTGACGGAGCAACAGACGGTGCTGAA
GACAAGGACGCGCCAATGCCACAAGCTGACTCTGCCCTGACTGGCGAACG
GAGTCATGACCGGGCGCCGTCGGGCAGCTTGCCTCCGCCGTCTTCAGTTT
CCGGGGGCAGTAGGTCGCCAAAGGTTAACCCGCGATACAAGGGCAAGACT
CTGACGGAGATTGGAAAGGAACATGGAGCAGCGGTTGAGGAGCCTGGGTC
GTACGTTGCGCTTCCTTCTGACTTTGTCCCTATGCAATGTTCCGGAATGA
CCGAGACAGACAGGAGCGTGCTGAACGAGACGTATGTTTCGAAAGGAGAC
ACTGTCGGAAGGCACCTACTCGACGACGACTTTAAGAAGGTGCAGGGCTC
GGGCGAGAAGGCGCATCACGGAGCAAGTGGAGAAAAACCACCGCTACCTC
GCACGCGGGCGTCGCTGCTCAGTGAAGGGCATGGGAGTCCGCGAGCCGTG
AAGCACGCACACTACAGCCCGCCGCTGAGTGTAGAAGACCAAAGAGCGGA
AATTGAGCTCATGGTGTCCAGGACGAGGAGCACCATCGAGAAGATGGAAA
AGATACAAAATGGTGGTCTCCGTGTCTCCGAACTGTCTGCCGTGGACGTG
AAGCCCATTGAGTTGGTGTACAGAGACGCTGCGTTTGAAATCTTGGAGGT
GATGCGCTCGAATCCTGTTGCAACGGCTGCAGTGGTTGGAAAACGGCTAA
AGCAACGGCTTGTGGATTGGCTCGAGTCCAAGAAGCATCTGGAGTTGGTG
TGGAAGTCGAAGCGTTTTGCGCGAAGAGACGCCACGTCGGACGTTCCTCG
CACGTGGAAGAGATCGGAGATGGTGCGAGATCTGGTGGGCGGGAGCAAGA
AGAGGTGTTCGGAAGGGAGCGAAGGTTGCAAGTCAAGGGAGGCCACAAAG
ACGGTGTGCGTTGACTTGGTGTGCCGAGATAGCAACCTGAGGGTTATATG
CGACTTGCTGTGGTACGCGTTTGAATGGGAAGCCGAAAATGAGGAGGAGG
CAGACAAGGGGCTGGAATTCATCGAGAAAACGTACCACATGGTGCAGAAA
GCATGCTCGTCGTCACGCGTGGTTTACGTGGATGAATACCTGTATGCTTA
CATTCGTCTGATCGCGGAGATGTCGAAGAGGGTGGAATTCCTGTTGGAGC
AGCGTGATGGGGGAGTTGCTCTGGAAAAGTTGCTGGATTGCGTGAAGGAA
GTGCTTGGCGGCAGCGTAAGCGCTCTCGAGTACGACGAGGTGTGCGAGGA
GGTGTTTGATGGGGTGGACGACTGGGAGGAACATGTGTGCGACTTTCCTC
TGATCTGCAAGCGGCTGGCGGAATGTGCGCTGAGCATGCCGTGGCGAAAG
GCGGGGTGCGAGTTGCTGGAGCACGCGAGAGCGTCGCTGAACGCTCACGG
CATGGACGCGAAGGAGCAGGGGGGCGCACTGAGGAGTTCAGGCGGGCAAG
GGGCCATGAACGACGGTGATGGTGAAGGAGAGAAGGGGCGACGGGTTTCA
GATGGTGACGAGGCGGAGAAGAGGTGGAAGGAGCTGTGGCGGGCAAGACA
GGTGGTGGAGGCAGGCGGGGGCCACTTGGTTGCGCTCAAGGTGCGGCGAG
TGGGTGATGAGACAGCGAGCAAGACTTTGAGGGTGGCGTTTCGGGTGTTG
TCGAAGGACGAGGCGTGCCATTACCGAAGCGTCAGGTGGGCGGACGGAGG
AGCGGAGAAGAAGGTGGTGTCGAACCTGACCAAGTACCTGAAGCGCGCGC
GGAAGCGCAAGCGATGTATGGAACTGGAGAACGAGGGCAGGGTGGACAGT
GCGAGGGACGTATATATTGTGGACAATCTTGACGTGCGCGTGGACGAGGA
CACTGGGTGTGTGAAGTATGTAAGCGGGACAGAGGATTTTCTGATGAATC
GCAACTTCAAGCGGAGGAAGGTGGCATGTAAGCTGAGGAGGTGCTTTGCT
ggagggggtggggtggcggaggcgatggctgtgtcggtgtcgTGA

protein sequence of Gvermi12763.t1

>Gvermi12763.t1 ID=Gvermi12763.t1|Name=Gvermi12763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=765bp
LGRNAATPELEFFEELRSLLGPQGQRNYSEFIKCLSLFSQRIISAEELMR
LADGLLGDRQPLTDAFCAFINQTDPNSTQTAVEILRRAKTSTDGATDGAE
DKDAPMPQADSALTGERSHDRAPSGSLPPPSSVSGGSRSPKVNPRYKGKT
LTEIGKEHGAAVEEPGSYVALPSDFVPMQCSGMTETDRSVLNETYVSKGD
TVGRHLLDDDFKKVQGSGEKAHHGASGEKPPLPRTRASLLSEGHGSPRAV
KHAHYSPPLSVEDQRAEIELMVSRTRSTIEKMEKIQNGGLRVSELSAVDV
KPIELVYRDAAFEILEVMRSNPVATAAVVGKRLKQRLVDWLESKKHLELV
WKSKRFARRDATSDVPRTWKRSEMVRDLVGGSKKRCSEGSEGCKSREATK
TVCVDLVCRDSNLRVICDLLWYAFEWEAENEEEADKGLEFIEKTYHMVQK
ACSSSRVVYVDEYLYAYIRLIAEMSKRVEFLLEQRDGGVALEKLLDCVKE
VLGGSVSALEYDEVCEEVFDGVDDWEEHVCDFPLICKRLAECALSMPWRK
AGCELLEHARASLNAHGMDAKEQGGALRSSGGQGAMNDGDGEGEKGRRVS
DGDEAEKRWKELWRARQVVEAGGGHLVALKVRRVGDETASKTLRVAFRVL
SKDEACHYRSVRWADGGAEKKVVSNLTKYLKRARKRKRCMELENEGRVDS
ARDVYIVDNLDVRVDEDTGCVKYVSGTEDFLMNRNFKRRKVACKLRRCFA
GGGGVAEAMAVSVS*

mRNA from alignment at ScGOVlb_425:1416039..1418333+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12763.t1 ID=Gvermi12763.t1|Name=Gvermi12763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2295bp|location=Sequence derived from alignment at ScGOVlb_425:1416039..1418333+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGGCCGCAATGCAGCCACTCCCGAACTGGAGTTCTTCGAGGAACTGCG
CAGCCTGCTTGGACCACAAGGGCAGCGCAATTATTCTGAGTTTATCAAGT
GTCTATCACTGTTCTCGCAGCGAATTATTTCTGCCGAAGAACTGATGCGC
CTCGCTGATGGTCTTCTTGGGGATAGACAACCGTTGACGGATGCCTTTTG
CGCGTTCATCAATCAGACGGATCCGAATTCAACCCAAACGGCTGTCGAGA
TTCTTAGACGAGCTAAGACGTCGACTGACGGAGCAACAGACGGTGCTGAA
GACAAGGACGCGCCAATGCCACAAGCTGACTCTGCCCTGACTGGCGAACG
GAGTCATGACCGGGCGCCGTCGGGCAGCTTGCCTCCGCCGTCTTCAGTTT
CCGGGGGCAGTAGGTCGCCAAAGGTTAACCCGCGATACAAGGGCAAGACT
CTGACGGAGATTGGAAAGGAACATGGAGCAGCGGTTGAGGAGCCTGGGTC
GTACGTTGCGCTTCCTTCTGACTTTGTCCCTATGCAATGTTCCGGAATGA
CCGAGACAGACAGGAGCGTGCTGAACGAGACGTATGTTTCGAAAGGAGAC
ACTGTCGGAAGGCACCTACTCGACGACGACTTTAAGAAGGTGCAGGGCTC
GGGCGAGAAGGCGCATCACGGAGCAAGTGGAGAAAAACCACCGCTACCTC
GCACGCGGGCGTCGCTGCTCAGTGAAGGGCATGGGAGTCCGCGAGCCGTG
AAGCACGCACACTACAGCCCGCCGCTGAGTGTAGAAGACCAAAGAGCGGA
AATTGAGCTCATGGTGTCCAGGACGAGGAGCACCATCGAGAAGATGGAAA
AGATACAAAATGGTGGTCTCCGTGTCTCCGAACTGTCTGCCGTGGACGTG
AAGCCCATTGAGTTGGTGTACAGAGACGCTGCGTTTGAAATCTTGGAGGT
GATGCGCTCGAATCCTGTTGCAACGGCTGCAGTGGTTGGAAAACGGCTAA
AGCAACGGCTTGTGGATTGGCTCGAGTCCAAGAAGCATCTGGAGTTGGTG
TGGAAGTCGAAGCGTTTTGCGCGAAGAGACGCCACGTCGGACGTTCCTCG
CACGTGGAAGAGATCGGAGATGGTGCGAGATCTGGTGGGCGGGAGCAAGA
AGAGGTGTTCGGAAGGGAGCGAAGGTTGCAAGTCAAGGGAGGCCACAAAG
ACGGTGTGCGTTGACTTGGTGTGCCGAGATAGCAACCTGAGGGTTATATG
CGACTTGCTGTGGTACGCGTTTGAATGGGAAGCCGAAAATGAGGAGGAGG
CAGACAAGGGGCTGGAATTCATCGAGAAAACGTACCACATGGTGCAGAAA
GCATGCTCGTCGTCACGCGTGGTTTACGTGGATGAATACCTGTATGCTTA
CATTCGTCTGATCGCGGAGATGTCGAAGAGGGTGGAATTCCTGTTGGAGC
AGCGTGATGGGGGAGTTGCTCTGGAAAAGTTGCTGGATTGCGTGAAGGAA
GTGCTTGGCGGCAGCGTAAGCGCTCTCGAGTACGACGAGGTGTGCGAGGA
GGTGTTTGATGGGGTGGACGACTGGGAGGAACATGTGTGCGACTTTCCTC
TGATCTGCAAGCGGCTGGCGGAATGTGCGCTGAGCATGCCGTGGCGAAAG
GCGGGGTGCGAGTTGCTGGAGCACGCGAGAGCGTCGCTGAACGCTCACGG
CATGGACGCGAAGGAGCAGGGGGGCGCACTGAGGAGTTCAGGCGGGCAAG
GGGCCATGAACGACGGTGATGGTGAAGGAGAGAAGGGGCGACGGGTTTCA
GATGGTGACGAGGCGGAGAAGAGGTGGAAGGAGCTGTGGCGGGCAAGACA
GGTGGTGGAGGCAGGCGGGGGCCACTTGGTTGCGCTCAAGGTGCGGCGAG
TGGGTGATGAGACAGCGAGCAAGACTTTGAGGGTGGCGTTTCGGGTGTTG
TCGAAGGACGAGGCGTGCCATTACCGAAGCGTCAGGTGGGCGGACGGAGG
AGCGGAGAAGAAGGTGGTGTCGAACCTGACCAAGTACCTGAAGCGCGCGC
GGAAGCGCAAGCGATGTATGGAACTGGAGAACGAGGGCAGGGTGGACAGT
GCGAGGGACGTATATATTGTGGACAATCTTGACGTGCGCGTGGACGAGGA
CACTGGGTGTGTGAAGTATGTAAGCGGGACAGAGGATTTTCTGATGAATC
GCAACTTCAAGCGGAGGAAGGTGGCATGTAAGCTGAGGAGGTGCTTTGCT
ggagggggtggggtggcggaggcgatggctgtgtcggtgtcgTGA

Coding sequence (CDS) from alignment at ScGOVlb_425:1416039..1418333+

>Gvermi12763.t1 ID=Gvermi12763.t1|Name=Gvermi12763.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2295bp|location=Sequence derived from alignment at ScGOVlb_425:1416039..1418333+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGGCCGCAATGCAGCCACTCCCGAACTGGAGTTCTTCGAGGAACTGCG
CAGCCTGCTTGGACCACAAGGGCAGCGCAATTATTCTGAGTTTATCAAGT
GTCTATCACTGTTCTCGCAGCGAATTATTTCTGCCGAAGAACTGATGCGC
CTCGCTGATGGTCTTCTTGGGGATAGACAACCGTTGACGGATGCCTTTTG
CGCGTTCATCAATCAGACGGATCCGAATTCAACCCAAACGGCTGTCGAGA
TTCTTAGACGAGCTAAGACGTCGACTGACGGAGCAACAGACGGTGCTGAA
GACAAGGACGCGCCAATGCCACAAGCTGACTCTGCCCTGACTGGCGAACG
GAGTCATGACCGGGCGCCGTCGGGCAGCTTGCCTCCGCCGTCTTCAGTTT
CCGGGGGCAGTAGGTCGCCAAAGGTTAACCCGCGATACAAGGGCAAGACT
CTGACGGAGATTGGAAAGGAACATGGAGCAGCGGTTGAGGAGCCTGGGTC
GTACGTTGCGCTTCCTTCTGACTTTGTCCCTATGCAATGTTCCGGAATGA
CCGAGACAGACAGGAGCGTGCTGAACGAGACGTATGTTTCGAAAGGAGAC
ACTGTCGGAAGGCACCTACTCGACGACGACTTTAAGAAGGTGCAGGGCTC
GGGCGAGAAGGCGCATCACGGAGCAAGTGGAGAAAAACCACCGCTACCTC
GCACGCGGGCGTCGCTGCTCAGTGAAGGGCATGGGAGTCCGCGAGCCGTG
AAGCACGCACACTACAGCCCGCCGCTGAGTGTAGAAGACCAAAGAGCGGA
AATTGAGCTCATGGTGTCCAGGACGAGGAGCACCATCGAGAAGATGGAAA
AGATACAAAATGGTGGTCTCCGTGTCTCCGAACTGTCTGCCGTGGACGTG
AAGCCCATTGAGTTGGTGTACAGAGACGCTGCGTTTGAAATCTTGGAGGT
GATGCGCTCGAATCCTGTTGCAACGGCTGCAGTGGTTGGAAAACGGCTAA
AGCAACGGCTTGTGGATTGGCTCGAGTCCAAGAAGCATCTGGAGTTGGTG
TGGAAGTCGAAGCGTTTTGCGCGAAGAGACGCCACGTCGGACGTTCCTCG
CACGTGGAAGAGATCGGAGATGGTGCGAGATCTGGTGGGCGGGAGCAAGA
AGAGGTGTTCGGAAGGGAGCGAAGGTTGCAAGTCAAGGGAGGCCACAAAG
ACGGTGTGCGTTGACTTGGTGTGCCGAGATAGCAACCTGAGGGTTATATG
CGACTTGCTGTGGTACGCGTTTGAATGGGAAGCCGAAAATGAGGAGGAGG
CAGACAAGGGGCTGGAATTCATCGAGAAAACGTACCACATGGTGCAGAAA
GCATGCTCGTCGTCACGCGTGGTTTACGTGGATGAATACCTGTATGCTTA
CATTCGTCTGATCGCGGAGATGTCGAAGAGGGTGGAATTCCTGTTGGAGC
AGCGTGATGGGGGAGTTGCTCTGGAAAAGTTGCTGGATTGCGTGAAGGAA
GTGCTTGGCGGCAGCGTAAGCGCTCTCGAGTACGACGAGGTGTGCGAGGA
GGTGTTTGATGGGGTGGACGACTGGGAGGAACATGTGTGCGACTTTCCTC
TGATCTGCAAGCGGCTGGCGGAATGTGCGCTGAGCATGCCGTGGCGAAAG
GCGGGGTGCGAGTTGCTGGAGCACGCGAGAGCGTCGCTGAACGCTCACGG
CATGGACGCGAAGGAGCAGGGGGGCGCACTGAGGAGTTCAGGCGGGCAAG
GGGCCATGAACGACGGTGATGGTGAAGGAGAGAAGGGGCGACGGGTTTCA
GATGGTGACGAGGCGGAGAAGAGGTGGAAGGAGCTGTGGCGGGCAAGACA
GGTGGTGGAGGCAGGCGGGGGCCACTTGGTTGCGCTCAAGGTGCGGCGAG
TGGGTGATGAGACAGCGAGCAAGACTTTGAGGGTGGCGTTTCGGGTGTTG
TCGAAGGACGAGGCGTGCCATTACCGAAGCGTCAGGTGGGCGGACGGAGG
AGCGGAGAAGAAGGTGGTGTCGAACCTGACCAAGTACCTGAAGCGCGCGC
GGAAGCGCAAGCGATGTATGGAACTGGAGAACGAGGGCAGGGTGGACAGT
GCGAGGGACGTATATATTGTGGACAATCTTGACGTGCGCGTGGACGAGGA
CACTGGGTGTGTGAAGTATGTAAGCGGGACAGAGGATTTTCTGATGAATC
GCAACTTCAAGCGGAGGAAGGTGGCATGTAAGCTGAGGAGGTGCTTTGCT
ggagggggtggggtggcggaggcgatggctgtgtcggtgtcgTGA