Gvermi12760.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12760.t1
Unique NameGvermi12760.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1402181..1403359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1348583.ATLH01000014_gene2685
PFAMsPectate_lyase_3
Max annot lvl976|Bacteroidetes
Evalue7.69e-92
EggNOG OGsCOG2273@1|root,COG5434@1|root,COG2273@2|Bacteria,COG5434@2|Bacteria,4NMVX@976|Bacteroidetes
DescriptionBelongs to the glycosyl hydrolase 28 family
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12760Gvermi12760Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1402181..1403359 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12760.t1.stop1Gvermi12760.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1402181..1402183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12760.t1.CDS1Gvermi12760.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1402181..1403359 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12760.t1.exon1Gvermi12760.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1402181..1403359 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12760.t1.start1Gvermi12760.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1403357..1403359 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12760.t1Gvermi12760.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1402181..1403359 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12760.t1 ID=Gvermi12760.t1|Name=Gvermi12760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=393bp
MSARIKLCFSAVLALAVCAIIALARLVHVRCEPQFDQQAIGRNAALFPQM
RRWSAAGTRKPIPPLDNVQAHVVLHGGSSRQINEKIEQLAAQLERSPSQT
GVILLKDATYHINKRVRMRSNIILKGQSRDGVRCVVNMTSRSAFFLGNIQ
NSGLYRMTISGSWGKPKYRWNIGDDEKNNELPGNDNISVFFSRQSRDCWI
DDVKIVDSADFPLQCAGEHITMRNIVVNRVHNKHGGTHGYWIILGRDNLI
TRSRATGLRHISVQGKRAKYNVFYDNDFRQEISFHVGDGGNNLITRNRIT
LPKGMPNGSGGGPDYRAVMGPWSAMHEKSKWNNFLYKNKLLERNHGHVKR
MRDDKVYTGPIFHKSLGELQTENFVASDIKPVGGELYPISVC*
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spliced messenger RNA

>Gvermi12760.t1 ID=Gvermi12760.t1|Name=Gvermi12760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at ScGOVlb_425:1402181..1403359- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCCGTATCAAACTCTGTTTCTCGGCAGTGCTTGCTCTCGCGGT
TTGCGCTATAATCGCTCTCGCGAGACTTGTGCACGTGCGCTGCGAGCCTC
AGTTTGACCAACAGGCCATTGGAAGGAACGCTGCGCTCTTCCCGCAGATG
AGGCGATGGTCCGCGGCCGGAACAAGAAAGCCCATTCCGCCCTTGGACAA
CGTGCAAGCGCATGTTGTGTTGCACGGTGGGAGCAGTCGACAAATCAACG
AAAAGATAGAGCAACTCGCTGCGCAACTCGAACGCAGCCCCTCCCAAACT
GGAGTCATATTACTCAAAGATGCAACGTATCACATCAACAAGCGCGTGCG
AATGAGAAGCAACATAATTCTCAAGGGACAAAGTCGAGATGGTGTGCGCT
GCGTGGTGAACATGACGTCTCGCTCTGCATTTTTTCTGGGCAACATACAG
AATAGTGGCCTGTATCGAATGACCATCAGCGGTTCGTGGGGGAAGCCAAA
GTACCGATGGAACATTGGTGACGATGAGAAGAACAATGAGCTGCCCGGGA
ACGACAACATATCTGTCTTTTTTTCGCGCCAGTCTAGAGATTGTTGGATT
GATGACGTAAAGATTGTGGACAGCGCTGACTTTCCGCTTCAGTGCGCGGG
GGAACACATCACCATGCGAAATATTGTGGTGAATCGTGTGCACAACAAGC
ATGGAGGCACTCACGGCTACTGGATCATTCTTGGTCGCGACAACCTAATC
ACAAGATCAAGAGCTACGGGCTTGAGGCATATCTCCGTGCAAGGCAAAAG
AGCAAAGTACAACGTGTTCTACGATAATGACTTTAGACAAGAAATAAGCT
TTCACGTGGGAGACGGAGGAAACAATTTGATAACACGCAATCGCATTACT
CTCCCGAAAGGAATGCCAAATGGAAGTGGAGGTGGCCCAGATTACCGGGC
GGTCATGGGTCCATGGTCTGCAATGCATGAAAAGTCGAAGTGGAACAACT
TCCTGTACAAGAACAAATTGCTTGAGCGCAACCATGGGCATGTAAAGCGT
ATGAGAGATGACAAGGTGTACACGGGCCCGATTTTTCACAAGTCGTTGGG
AGAATTGCAGACCGAGAACTTTGTGGCGTCAGATATTAAGCCAGTTGGTG
GAGAATTGTATCCCATCTCAGTTTGCTGA
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protein sequence of Gvermi12760.t1

>Gvermi12760.t1 ID=Gvermi12760.t1|Name=Gvermi12760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=393bp
MSARIKLCFSAVLALAVCAIIALARLVHVRCEPQFDQQAIGRNAALFPQM
RRWSAAGTRKPIPPLDNVQAHVVLHGGSSRQINEKIEQLAAQLERSPSQT
GVILLKDATYHINKRVRMRSNIILKGQSRDGVRCVVNMTSRSAFFLGNIQ
NSGLYRMTISGSWGKPKYRWNIGDDEKNNELPGNDNISVFFSRQSRDCWI
DDVKIVDSADFPLQCAGEHITMRNIVVNRVHNKHGGTHGYWIILGRDNLI
TRSRATGLRHISVQGKRAKYNVFYDNDFRQEISFHVGDGGNNLITRNRIT
LPKGMPNGSGGGPDYRAVMGPWSAMHEKSKWNNFLYKNKLLERNHGHVKR
MRDDKVYTGPIFHKSLGELQTENFVASDIKPVGGELYPISVC*
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mRNA from alignment at ScGOVlb_425:1402181..1403359-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12760.t1 ID=Gvermi12760.t1|Name=Gvermi12760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at ScGOVlb_425:1402181..1403359- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGCCCGTATCAAACTCTGTTTCTCGGCAGTGCTTGCTCTCGCGGT
TTGCGCTATAATCGCTCTCGCGAGACTTGTGCACGTGCGCTGCGAGCCTC
AGTTTGACCAACAGGCCATTGGAAGGAACGCTGCGCTCTTCCCGCAGATG
AGGCGATGGTCCGCGGCCGGAACAAGAAAGCCCATTCCGCCCTTGGACAA
CGTGCAAGCGCATGTTGTGTTGCACGGTGGGAGCAGTCGACAAATCAACG
AAAAGATAGAGCAACTCGCTGCGCAACTCGAACGCAGCCCCTCCCAAACT
GGAGTCATATTACTCAAAGATGCAACGTATCACATCAACAAGCGCGTGCG
AATGAGAAGCAACATAATTCTCAAGGGACAAAGTCGAGATGGTGTGCGCT
GCGTGGTGAACATGACGTCTCGCTCTGCATTTTTTCTGGGCAACATACAG
AATAGTGGCCTGTATCGAATGACCATCAGCGGTTCGTGGGGGAAGCCAAA
GTACCGATGGAACATTGGTGACGATGAGAAGAACAATGAGCTGCCCGGGA
ACGACAACATATCTGTCTTTTTTTCGCGCCAGTCTAGAGATTGTTGGATT
GATGACGTAAAGATTGTGGACAGCGCTGACTTTCCGCTTCAGTGCGCGGG
GGAACACATCACCATGCGAAATATTGTGGTGAATCGTGTGCACAACAAGC
ATGGAGGCACTCACGGCTACTGGATCATTCTTGGTCGCGACAACCTAATC
ACAAGATCAAGAGCTACGGGCTTGAGGCATATCTCCGTGCAAGGCAAAAG
AGCAAAGTACAACGTGTTCTACGATAATGACTTTAGACAAGAAATAAGCT
TTCACGTGGGAGACGGAGGAAACAATTTGATAACACGCAATCGCATTACT
CTCCCGAAAGGAATGCCAAATGGAAGTGGAGGTGGCCCAGATTACCGGGC
GGTCATGGGTCCATGGTCTGCAATGCATGAAAAGTCGAAGTGGAACAACT
TCCTGTACAAGAACAAATTGCTTGAGCGCAACCATGGGCATGTAAAGCGT
ATGAGAGATGACAAGGTGTACACGGGCCCGATTTTTCACAAGTCGTTGGG
AGAATTGCAGACCGAGAACTTTGTGGCGTCAGATATTAAGCCAGTTGGTG
GAGAATTGTATCCCATCTCAGTTTGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1402181..1403359-

>Gvermi12760.t1 ID=Gvermi12760.t1|Name=Gvermi12760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1179bp|location=Sequence derived from alignment at ScGOVlb_425:1402181..1403359- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGCCCGTATCAAACTCTGTTTCTCGGCAGTGCTTGCTCTCGCGGT
TTGCGCTATAATCGCTCTCGCGAGACTTGTGCACGTGCGCTGCGAGCCTC
AGTTTGACCAACAGGCCATTGGAAGGAACGCTGCGCTCTTCCCGCAGATG
AGGCGATGGTCCGCGGCCGGAACAAGAAAGCCCATTCCGCCCTTGGACAA
CGTGCAAGCGCATGTTGTGTTGCACGGTGGGAGCAGTCGACAAATCAACG
AAAAGATAGAGCAACTCGCTGCGCAACTCGAACGCAGCCCCTCCCAAACT
GGAGTCATATTACTCAAAGATGCAACGTATCACATCAACAAGCGCGTGCG
AATGAGAAGCAACATAATTCTCAAGGGACAAAGTCGAGATGGTGTGCGCT
GCGTGGTGAACATGACGTCTCGCTCTGCATTTTTTCTGGGCAACATACAG
AATAGTGGCCTGTATCGAATGACCATCAGCGGTTCGTGGGGGAAGCCAAA
GTACCGATGGAACATTGGTGACGATGAGAAGAACAATGAGCTGCCCGGGA
ACGACAACATATCTGTCTTTTTTTCGCGCCAGTCTAGAGATTGTTGGATT
GATGACGTAAAGATTGTGGACAGCGCTGACTTTCCGCTTCAGTGCGCGGG
GGAACACATCACCATGCGAAATATTGTGGTGAATCGTGTGCACAACAAGC
ATGGAGGCACTCACGGCTACTGGATCATTCTTGGTCGCGACAACCTAATC
ACAAGATCAAGAGCTACGGGCTTGAGGCATATCTCCGTGCAAGGCAAAAG
AGCAAAGTACAACGTGTTCTACGATAATGACTTTAGACAAGAAATAAGCT
TTCACGTGGGAGACGGAGGAAACAATTTGATAACACGCAATCGCATTACT
CTCCCGAAAGGAATGCCAAATGGAAGTGGAGGTGGCCCAGATTACCGGGC
GGTCATGGGTCCATGGTCTGCAATGCATGAAAAGTCGAAGTGGAACAACT
TCCTGTACAAGAACAAATTGCTTGAGCGCAACCATGGGCATGTAAAGCGT
ATGAGAGATGACAAGGTGTACACGGGCCCGATTTTTCACAAGTCGTTGGG
AGAATTGCAGACCGAGAACTTTGTGGCGTCAGATATTAAGCCAGTTGGTG
GAGAATTGTATCCCATCTCAGTTTGCTGA
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