Gvermi12754.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12754.t1
Unique NameGvermi12754.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length374
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1383101..1384222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706368.1
PFAMsGFO_IDH_MocA,GFO_IDH_MocA_C
Max annot lvl2759|Eukaryota
Evalue6.21e-118
EggNOG OGsCOG0673@1|root,KOG2741@2759|Eukaryota
DescriptionD-xylose 1-dehydrogenase (NADP ) activity
COG categoryV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12754Gvermi12754Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1383101..1384222 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12754.t1.stop1Gvermi12754.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1383101..1383103 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12754.t1.CDS1Gvermi12754.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1383101..1384222 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12754.t1.exon1Gvermi12754.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1383101..1384222 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12754.t1.start1Gvermi12754.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1384220..1384222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12754.t1Gvermi12754.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1383101..1384222 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12754.t1 ID=Gvermi12754.t1|Name=Gvermi12754.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=374bp
MVDLSAIAAEFASAKSALKVDTSADDSNALNIGIIGCGRIGQCHARSICT
SIPNAKLVCVSDVFESAALKLAKTYQVPMACTDPHDLINNPAVQAVIVCS
PTDTHAEIIKAAAAAGKHIFCEKPVDKNLEIIAELENVLSTSKVKFFLGF
QRRFDKHFKYAKTVAESGAIGKPIKLHLTSRDPAPPPVGYLKQSGGLFLD
MSSHDFDMARFLTGSNVVSISAVGIADNPEIGAIGDLDHTLVTATFENGC
IATIDNSRASALGYDQRAEFFGTKGSVNVGNVHPNTCDSTDKDGYHAPSP
LNFFMERYADAYVEEMKAFVDVILNDTPVPCGIEDGRLTVLYAAMANLSI
KEKRAVSITEFDKPAGGDVSARY*
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spliced messenger RNA

>Gvermi12754.t1 ID=Gvermi12754.t1|Name=Gvermi12754.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at ScGOVlb_425:1383101..1384222- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGATCTTTCCGCAATCGCCGCTGAGTTCGCGTCGGCCAAGTCCGC
CCTGAAAGTGGACACTTCCGCCGACGATTCTAACGCGCTAAACATTGGGA
TCATCGGATGCGGCCGCATTGGCCAATGTCATGCGCGCAGCATCTGCACC
AGCATTCCGAACGCCAAGCTCGTCTGCGTATCTGATGTATTCGAATCCGC
CGCCCTCAAGCTGGCAAAGACCTACCAGGTGCCAATGGCCTGCACCGACC
CACATGACCTCATTAACAACCCCGCCGTGCAGGCCGTCATCGTGTGCTCT
CCCACTGACACCCACGCCGAAATCATCAAGGCTGCCGCCGCTGCTGGCAA
GCACATTTTCTGTGAAAAGCCTGTCGATAAGAATCTTGAAATCATCGCTG
AACTAGAGAACGTTCTCTCTACGTCCAAGGTCAAGTTCTTCCTTGGGTTT
CAACGACGTTTTGACAAGCATTTCAAATATGCCAAGACTGTCGCCGAGTC
CGGTGCCATTGGAAAGCCCATCAAGTTGCACCTAACCTCAAGGGATCCGG
CCCCGCCGCCAGTTGGATATCTCAAGCAGTCTGGCGGACTATTTCTCGAC
ATGTCCAGCCATGACTTTGACATGGCTAGGTTTTTGACTGGCTCAAATGT
GGTTTCCATTTCCGCGGTTGGAATTGCTGATAATCCTGAGATTGGTGCCA
TTGGTGACTTAGACCACACCCTTGTGACAGCCACTTTCGAGAACGGTTGT
ATCGCAACTATCGACAATTCCCGCGCTTCGGCTCTTGGATATGATCAACG
TGCCGAGTTCTTTGGCACTAAAGGGAGTGTCAACGTTGGCAACGTGCACC
CGAACACATGTGACTCCACGGACAAGGATGGCTACCATGCTCCAAGTCCT
CTCAACTTTTTCATGGAGAGGTATGCGGATGCCTATGTTGAAGAGATGAA
GGCTTTCGTCGATGTTATCCTCAACGATACACCGGTTCCATGTGGCATCG
AGGACGGAAGGTTAACAGTCCTGTATGCAGCCATGGCCAACCTCAGTATC
AAGGAAAAACGAGCTGTCAGCATCACTGAGTTTGATAAGCCAGCGGGGGG
TGATGTATCAGCCCGTTACTAG
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protein sequence of Gvermi12754.t1

>Gvermi12754.t1 ID=Gvermi12754.t1|Name=Gvermi12754.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=374bp
MVDLSAIAAEFASAKSALKVDTSADDSNALNIGIIGCGRIGQCHARSICT
SIPNAKLVCVSDVFESAALKLAKTYQVPMACTDPHDLINNPAVQAVIVCS
PTDTHAEIIKAAAAAGKHIFCEKPVDKNLEIIAELENVLSTSKVKFFLGF
QRRFDKHFKYAKTVAESGAIGKPIKLHLTSRDPAPPPVGYLKQSGGLFLD
MSSHDFDMARFLTGSNVVSISAVGIADNPEIGAIGDLDHTLVTATFENGC
IATIDNSRASALGYDQRAEFFGTKGSVNVGNVHPNTCDSTDKDGYHAPSP
LNFFMERYADAYVEEMKAFVDVILNDTPVPCGIEDGRLTVLYAAMANLSI
KEKRAVSITEFDKPAGGDVSARY*
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mRNA from alignment at ScGOVlb_425:1383101..1384222-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12754.t1 ID=Gvermi12754.t1|Name=Gvermi12754.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at ScGOVlb_425:1383101..1384222- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGATCTTTCCGCAATCGCCGCTGAGTTCGCGTCGGCCAAGTCCGC
CCTGAAAGTGGACACTTCCGCCGACGATTCTAACGCGCTAAACATTGGGA
TCATCGGATGCGGCCGCATTGGCCAATGTCATGCGCGCAGCATCTGCACC
AGCATTCCGAACGCCAAGCTCGTCTGCGTATCTGATGTATTCGAATCCGC
CGCCCTCAAGCTGGCAAAGACCTACCAGGTGCCAATGGCCTGCACCGACC
CACATGACCTCATTAACAACCCCGCCGTGCAGGCCGTCATCGTGTGCTCT
CCCACTGACACCCACGCCGAAATCATCAAGGCTGCCGCCGCTGCTGGCAA
GCACATTTTCTGTGAAAAGCCTGTCGATAAGAATCTTGAAATCATCGCTG
AACTAGAGAACGTTCTCTCTACGTCCAAGGTCAAGTTCTTCCTTGGGTTT
CAACGACGTTTTGACAAGCATTTCAAATATGCCAAGACTGTCGCCGAGTC
CGGTGCCATTGGAAAGCCCATCAAGTTGCACCTAACCTCAAGGGATCCGG
CCCCGCCGCCAGTTGGATATCTCAAGCAGTCTGGCGGACTATTTCTCGAC
ATGTCCAGCCATGACTTTGACATGGCTAGGTTTTTGACTGGCTCAAATGT
GGTTTCCATTTCCGCGGTTGGAATTGCTGATAATCCTGAGATTGGTGCCA
TTGGTGACTTAGACCACACCCTTGTGACAGCCACTTTCGAGAACGGTTGT
ATCGCAACTATCGACAATTCCCGCGCTTCGGCTCTTGGATATGATCAACG
TGCCGAGTTCTTTGGCACTAAAGGGAGTGTCAACGTTGGCAACGTGCACC
CGAACACATGTGACTCCACGGACAAGGATGGCTACCATGCTCCAAGTCCT
CTCAACTTTTTCATGGAGAGGTATGCGGATGCCTATGTTGAAGAGATGAA
GGCTTTCGTCGATGTTATCCTCAACGATACACCGGTTCCATGTGGCATCG
AGGACGGAAGGTTAACAGTCCTGTATGCAGCCATGGCCAACCTCAGTATC
AAGGAAAAACGAGCTGTCAGCATCACTGAGTTTGATAAGCCAGCGGGGGG
TGATGTATCAGCCCGTTACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_425:1383101..1384222-

>Gvermi12754.t1 ID=Gvermi12754.t1|Name=Gvermi12754.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1122bp|location=Sequence derived from alignment at ScGOVlb_425:1383101..1384222- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGATCTTTCCGCAATCGCCGCTGAGTTCGCGTCGGCCAAGTCCGC
CCTGAAAGTGGACACTTCCGCCGACGATTCTAACGCGCTAAACATTGGGA
TCATCGGATGCGGCCGCATTGGCCAATGTCATGCGCGCAGCATCTGCACC
AGCATTCCGAACGCCAAGCTCGTCTGCGTATCTGATGTATTCGAATCCGC
CGCCCTCAAGCTGGCAAAGACCTACCAGGTGCCAATGGCCTGCACCGACC
CACATGACCTCATTAACAACCCCGCCGTGCAGGCCGTCATCGTGTGCTCT
CCCACTGACACCCACGCCGAAATCATCAAGGCTGCCGCCGCTGCTGGCAA
GCACATTTTCTGTGAAAAGCCTGTCGATAAGAATCTTGAAATCATCGCTG
AACTAGAGAACGTTCTCTCTACGTCCAAGGTCAAGTTCTTCCTTGGGTTT
CAACGACGTTTTGACAAGCATTTCAAATATGCCAAGACTGTCGCCGAGTC
CGGTGCCATTGGAAAGCCCATCAAGTTGCACCTAACCTCAAGGGATCCGG
CCCCGCCGCCAGTTGGATATCTCAAGCAGTCTGGCGGACTATTTCTCGAC
ATGTCCAGCCATGACTTTGACATGGCTAGGTTTTTGACTGGCTCAAATGT
GGTTTCCATTTCCGCGGTTGGAATTGCTGATAATCCTGAGATTGGTGCCA
TTGGTGACTTAGACCACACCCTTGTGACAGCCACTTTCGAGAACGGTTGT
ATCGCAACTATCGACAATTCCCGCGCTTCGGCTCTTGGATATGATCAACG
TGCCGAGTTCTTTGGCACTAAAGGGAGTGTCAACGTTGGCAACGTGCACC
CGAACACATGTGACTCCACGGACAAGGATGGCTACCATGCTCCAAGTCCT
CTCAACTTTTTCATGGAGAGGTATGCGGATGCCTATGTTGAAGAGATGAA
GGCTTTCGTCGATGTTATCCTCAACGATACACCGGTTCCATGTGGCATCG
AGGACGGAAGGTTAACAGTCCTGTATGCAGCCATGGCCAACCTCAGTATC
AAGGAAAAACGAGCTGTCAGCATCACTGAGTTTGATAAGCCAGCGGGGGG
TGATGTATCAGCCCGTTACTAG
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