Gvermi12751.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12751.t1
Unique Name	Gvermi12751.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	257

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1378527..1379297 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3659.XP_004162105.1
PFAMs	Lactamase_B
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC02313
KEGG ko	ko:K17725
KEGG Reaction	R08678
KEGG Pathway	ko00920,map00920
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009960,GO:0010154,GO:0016491,GO:0016701,GO:0016702,GO:0016787,GO:0016788,GO:0022414,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050313,GO:0050896,GO:0051213,GO:0055114,GO:0061458
Evalue	1.82e-87
EggNOG OGs	COG0491@1\|root,KOG0814@2759\|Eukaryota,37MVP@33090\|Viridiplantae,3GDGT@35493\|Streptophyta,4JDAM@91835\|fabids
EC	1.13.11.18
Description	Persulfide dioxygenase ETHE1 homolog
COG category	S
BRITE	ko00000,ko00001,ko01000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12751	Gvermi12751	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1378527..1379297 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12751.t1.start1	Gvermi12751.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1378527..1378529 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12751.t1.CDS1	Gvermi12751.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1378527..1379297 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12751.t1.exon1	Gvermi12751.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1378527..1379297 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12751.t1.stop1	Gvermi12751.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1379295..1379297 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12751.t1	Gvermi12751.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1378527..1379297 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1378527..1379297+
coding sequence from alignment at ScGOVlb_425:1378527..1379297+

mRNA sequence

>Gvermi12751.t1 ID=Gvermi12751.t1|Name=Gvermi12751.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=257bp
MAQTTSFVFFRQLFDQTSYTYTYLLGDPETKEAILIDPVDTQIDRDLRVV
TECGFHLVYALNTHAHADHISATGLIKKRIPSVKSVLGRASKGKADLLVS
EDDMISVGSNFHLKVIETPGHTAGCVSYYLQEPKQSISGVVFTGDALLIR
GCGRTDFQEGDSGALFNSVRNKLFKLPRSTIVYPAHDYRGRSCSTIEEEI
RFNPRLGEGKSLEDFRDIMTSLQLAHPKMIDVAVPANLNCGFLPDDDQEP
ERSVTQ*

spliced messenger RNA

>Gvermi12751.t1 ID=Gvermi12751.t1|Name=Gvermi12751.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=771bp|location=Sequence derived from alignment at ScGOVlb_425:1378527..1379297+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAAACCACATCTTTTGTGTTCTTTCGACAGCTTTTTGACCAAAC
GTCGTATACGTACACATACTTGCTTGGGGATCCCGAGACCAAGGAGGCAA
TCCTCATCGATCCCGTTGACACTCAGATCGACAGAGATTTACGCGTGGTA
ACCGAATGCGGTTTTCATTTGGTTTACGCGCTCAACACACATGCTCACGC
AGACCATATTTCCGCCACTGGGCTCATCAAGAAGAGAATACCATCCGTCA
AATCTGTGCTTGGCAGAGCATCAAAGGGAAAAGCCGACCTCCTTGTTAGT
GAAGATGATATGATTTCAGTTGGCTCAAACTTCCATCTCAAAGTGATTGA
GACCCCAGGCCACACTGCCGGGTGTGTCTCTTATTATTTGCAAGAACCAA
AGCAAAGCATTTCAGGAGTCGTGTTCACCGGAGATGCTCTTCTTATCAGA
GGCTGCGGGCGTACTGATTTCCAGGAGGGTGACTCAGGTGCTTTGTTTAA
CAGCGTGCGGAACAAACTGTTCAAATTGCCTCGCAGTACTATCGTATATC
CCGCCCATGACTACCGCGGAAGAAGTTGTTCGACGATAGAAGAGGAAATT
CGCTTCAATCCGCGTCTCGGCGAGGGAAAGAGCCTGGAAGATTTTCGCGA
CATAATGACCAGTTTGCAACTCGCTCACCCTAAAATGATAGACGTCGCTG
TGCCGGCAAATTTGAATTGTGGATTTCTTCCTGACGACGATCAAGAACCA
GAGAGATCTGTGACACAATAA

protein sequence of Gvermi12751.t1

>Gvermi12751.t1 ID=Gvermi12751.t1|Name=Gvermi12751.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=257bp
MAQTTSFVFFRQLFDQTSYTYTYLLGDPETKEAILIDPVDTQIDRDLRVV
TECGFHLVYALNTHAHADHISATGLIKKRIPSVKSVLGRASKGKADLLVS
EDDMISVGSNFHLKVIETPGHTAGCVSYYLQEPKQSISGVVFTGDALLIR
GCGRTDFQEGDSGALFNSVRNKLFKLPRSTIVYPAHDYRGRSCSTIEEEI
RFNPRLGEGKSLEDFRDIMTSLQLAHPKMIDVAVPANLNCGFLPDDDQEP
ERSVTQ*

mRNA from alignment at ScGOVlb_425:1378527..1379297+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12751.t1 ID=Gvermi12751.t1|Name=Gvermi12751.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=771bp|location=Sequence derived from alignment at ScGOVlb_425:1378527..1379297+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCAAACCACATCTTTTGTGTTCTTTCGACAGCTTTTTGACCAAAC
GTCGTATACGTACACATACTTGCTTGGGGATCCCGAGACCAAGGAGGCAA
TCCTCATCGATCCCGTTGACACTCAGATCGACAGAGATTTACGCGTGGTA
ACCGAATGCGGTTTTCATTTGGTTTACGCGCTCAACACACATGCTCACGC
AGACCATATTTCCGCCACTGGGCTCATCAAGAAGAGAATACCATCCGTCA
AATCTGTGCTTGGCAGAGCATCAAAGGGAAAAGCCGACCTCCTTGTTAGT
GAAGATGATATGATTTCAGTTGGCTCAAACTTCCATCTCAAAGTGATTGA
GACCCCAGGCCACACTGCCGGGTGTGTCTCTTATTATTTGCAAGAACCAA
AGCAAAGCATTTCAGGAGTCGTGTTCACCGGAGATGCTCTTCTTATCAGA
GGCTGCGGGCGTACTGATTTCCAGGAGGGTGACTCAGGTGCTTTGTTTAA
CAGCGTGCGGAACAAACTGTTCAAATTGCCTCGCAGTACTATCGTATATC
CCGCCCATGACTACCGCGGAAGAAGTTGTTCGACGATAGAAGAGGAAATT
CGCTTCAATCCGCGTCTCGGCGAGGGAAAGAGCCTGGAAGATTTTCGCGA
CATAATGACCAGTTTGCAACTCGCTCACCCTAAAATGATAGACGTCGCTG
TGCCGGCAAATTTGAATTGTGGATTTCTTCCTGACGACGATCAAGAACCA
GAGAGATCTGTGACACAATAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1378527..1379297+

>Gvermi12751.t1 ID=Gvermi12751.t1|Name=Gvermi12751.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=771bp|location=Sequence derived from alignment at ScGOVlb_425:1378527..1379297+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCAAACCACATCTTTTGTGTTCTTTCGACAGCTTTTTGACCAAAC
GTCGTATACGTACACATACTTGCTTGGGGATCCCGAGACCAAGGAGGCAA
TCCTCATCGATCCCGTTGACACTCAGATCGACAGAGATTTACGCGTGGTA
ACCGAATGCGGTTTTCATTTGGTTTACGCGCTCAACACACATGCTCACGC
AGACCATATTTCCGCCACTGGGCTCATCAAGAAGAGAATACCATCCGTCA
AATCTGTGCTTGGCAGAGCATCAAAGGGAAAAGCCGACCTCCTTGTTAGT
GAAGATGATATGATTTCAGTTGGCTCAAACTTCCATCTCAAAGTGATTGA
GACCCCAGGCCACACTGCCGGGTGTGTCTCTTATTATTTGCAAGAACCAA
AGCAAAGCATTTCAGGAGTCGTGTTCACCGGAGATGCTCTTCTTATCAGA
GGCTGCGGGCGTACTGATTTCCAGGAGGGTGACTCAGGTGCTTTGTTTAA
CAGCGTGCGGAACAAACTGTTCAAATTGCCTCGCAGTACTATCGTATATC
CCGCCCATGACTACCGCGGAAGAAGTTGTTCGACGATAGAAGAGGAAATT
CGCTTCAATCCGCGTCTCGGCGAGGGAAAGAGCCTGGAAGATTTTCGCGA
CATAATGACCAGTTTGCAACTCGCTCACCCTAAAATGATAGACGTCGCTG
TGCCGGCAAATTTGAATTGTGGATTTCTTCCTGACGACGATCAAGAACCA
GAGAGATCTGTGACACAATAA