Gvermi12750.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12750.t1
Unique NameGvermi12750.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length460
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1376099..1377478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12750Gvermi12750Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1376099..1377478 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12750.t1.stop1Gvermi12750.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1376099..1376101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12750.t1.CDS1Gvermi12750.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1376099..1377478 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12750.t1.exon1Gvermi12750.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1376099..1377478 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12750.t1.start1Gvermi12750.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1377476..1377478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12750.t1Gvermi12750.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1376099..1377478 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12750.t1 ID=Gvermi12750.t1|Name=Gvermi12750.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=460bp
MKVFAFFLSGLLTAFFAGSGLSTAVELHAAQRSTTTSCQSIRSAMMEAYY
AQVGLIRRGLPVRVAQSEFVYAANYYAAYSSYFTYYNLNTTCVWTNLWYN
LFDYQNRARWALDYLKQIRILNSEINFLNFTQYPTLPHMDPSDEAYAHDL
WFAIDHRLKTTPRGNYVFEDFKFPNNVAILYDPEKDLACSEYQKFGPLTT
TNSVPATKALVALGMASIKMYRIGASKPLISQMLQHFVGFSFNGVRCTRT
EKESLSIPVRLIEAYSRNLGFIYASSTKAPLPTFSVEAFETVFDDEISSL
SSYNSWGHTKFAKLVGRYSIPAIVNSVDTFLDDANYQALISASSGSTSTI
PDEELDEIDDRFLVNERQVTCAAGYVWLTRETAVTNALEHCCAAVCDTFS
LLSTSADPFPHEECCYRCNENHGCPSGLQESDIFDNDNTYVIVPEYGEQS
QQTVTMIDI*
back to top

spliced messenger RNA

>Gvermi12750.t1 ID=Gvermi12750.t1|Name=Gvermi12750.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at ScGOVlb_425:1376099..1377478- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTCTTTGCTTTTTTCCTTTCGGGGTTATTGACTGCTTTCTTTGC
CGGCTCTGGTTTGTCAACAGCTGTAGAACTTCATGCAGCACAGCGATCTA
CCACCACATCGTGCCAGTCCATACGAAGTGCTATGATGGAAGCCTACTAC
GCTCAGGTCGGCCTTATTCGTCGTGGGCTACCAGTGAGGGTGGCCCAATC
GGAATTTGTCTATGCCGCCAACTATTACGCCGCATACAGCTCGTATTTCA
CTTACTACAATCTAAATACCACATGTGTATGGACAAATCTTTGGTATAAT
CTCTTCGACTATCAGAACAGAGCTAGATGGGCATTAGATTATCTTAAGCA
GATTAGGATATTGAACTCGGAGATCAACTTTCTGAACTTCACACAATATC
CGACTTTGCCGCATATGGATCCCAGTGATGAAGCCTATGCGCATGATCTT
TGGTTTGCTATCGATCACCGTTTGAAGACCACGCCAAGAGGAAATTATGT
GTTCGAGGACTTTAAGTTTCCAAACAATGTCGCGATTTTATACGACCCAG
AAAAGGATTTGGCATGCTCTGAGTATCAGAAGTTTGGTCCTTTGACGACC
ACTAATTCTGTGCCAGCTACGAAAGCACTTGTAGCATTAGGGATGGCATC
GATCAAGATGTATCGGATCGGTGCCTCAAAACCTTTAATCTCACAAATGC
TACAGCATTTTGTGGGATTTTCGTTCAATGGAGTCCGTTGTACCAGAACC
GAAAAAGAGTCTTTGAGTATTCCGGTACGCTTAATAGAAGCGTACTCAAG
GAACTTGGGCTTCATTTATGCATCATCCACAAAGGCTCCCTTACCAACGT
TCTCTGTCGAAGCGTTTGAGACTGTTTTTGATGATGAAATTAGCTCATTA
TCTTCATACAACTCATGGGGCCATACAAAGTTCGCCAAGCTCGTTGGAAG
ATACTCAATTCCTGCAATAGTGAACTCAGTCGATACTTTTCTGGACGACG
CGAATTACCAAGCTCTGATTTCTGCTTCCTCGGGCAGCACATCGACTATT
CCTGATGAAGAACTGGATGAAATAGATGACCGATTTCTTGTTAATGAGCG
CCAAGTCACTTGTGCTGCTGGATATGTCTGGCTTACTCGTGAAACTGCTG
TGACCAATGCTCTAGAACATTGCTGCGCAGCAGTTTGTGACACATTTTCT
CTATTATCAACGTCGGCTGATCCCTTCCCGCACGAAGAATGCTGTTATCG
CTGCAATGAGAATCATGGCTGTCCAAGTGGGCTACAGGAGTCTGACATTT
TTGATAATGATAATACGTATGTGATTGTTCCCGAGTATGGTGAACAATCC
CAACAAACAGTTACAATGATTGATATTTAA
back to top

protein sequence of Gvermi12750.t1

>Gvermi12750.t1 ID=Gvermi12750.t1|Name=Gvermi12750.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=460bp
MKVFAFFLSGLLTAFFAGSGLSTAVELHAAQRSTTTSCQSIRSAMMEAYY
AQVGLIRRGLPVRVAQSEFVYAANYYAAYSSYFTYYNLNTTCVWTNLWYN
LFDYQNRARWALDYLKQIRILNSEINFLNFTQYPTLPHMDPSDEAYAHDL
WFAIDHRLKTTPRGNYVFEDFKFPNNVAILYDPEKDLACSEYQKFGPLTT
TNSVPATKALVALGMASIKMYRIGASKPLISQMLQHFVGFSFNGVRCTRT
EKESLSIPVRLIEAYSRNLGFIYASSTKAPLPTFSVEAFETVFDDEISSL
SSYNSWGHTKFAKLVGRYSIPAIVNSVDTFLDDANYQALISASSGSTSTI
PDEELDEIDDRFLVNERQVTCAAGYVWLTRETAVTNALEHCCAAVCDTFS
LLSTSADPFPHEECCYRCNENHGCPSGLQESDIFDNDNTYVIVPEYGEQS
QQTVTMIDI*
back to top

mRNA from alignment at ScGOVlb_425:1376099..1377478-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12750.t1 ID=Gvermi12750.t1|Name=Gvermi12750.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at ScGOVlb_425:1376099..1377478- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGTCTTTGCTTTTTTCCTTTCGGGGTTATTGACTGCTTTCTTTGC
CGGCTCTGGTTTGTCAACAGCTGTAGAACTTCATGCAGCACAGCGATCTA
CCACCACATCGTGCCAGTCCATACGAAGTGCTATGATGGAAGCCTACTAC
GCTCAGGTCGGCCTTATTCGTCGTGGGCTACCAGTGAGGGTGGCCCAATC
GGAATTTGTCTATGCCGCCAACTATTACGCCGCATACAGCTCGTATTTCA
CTTACTACAATCTAAATACCACATGTGTATGGACAAATCTTTGGTATAAT
CTCTTCGACTATCAGAACAGAGCTAGATGGGCATTAGATTATCTTAAGCA
GATTAGGATATTGAACTCGGAGATCAACTTTCTGAACTTCACACAATATC
CGACTTTGCCGCATATGGATCCCAGTGATGAAGCCTATGCGCATGATCTT
TGGTTTGCTATCGATCACCGTTTGAAGACCACGCCAAGAGGAAATTATGT
GTTCGAGGACTTTAAGTTTCCAAACAATGTCGCGATTTTATACGACCCAG
AAAAGGATTTGGCATGCTCTGAGTATCAGAAGTTTGGTCCTTTGACGACC
ACTAATTCTGTGCCAGCTACGAAAGCACTTGTAGCATTAGGGATGGCATC
GATCAAGATGTATCGGATCGGTGCCTCAAAACCTTTAATCTCACAAATGC
TACAGCATTTTGTGGGATTTTCGTTCAATGGAGTCCGTTGTACCAGAACC
GAAAAAGAGTCTTTGAGTATTCCGGTACGCTTAATAGAAGCGTACTCAAG
GAACTTGGGCTTCATTTATGCATCATCCACAAAGGCTCCCTTACCAACGT
TCTCTGTCGAAGCGTTTGAGACTGTTTTTGATGATGAAATTAGCTCATTA
TCTTCATACAACTCATGGGGCCATACAAAGTTCGCCAAGCTCGTTGGAAG
ATACTCAATTCCTGCAATAGTGAACTCAGTCGATACTTTTCTGGACGACG
CGAATTACCAAGCTCTGATTTCTGCTTCCTCGGGCAGCACATCGACTATT
CCTGATGAAGAACTGGATGAAATAGATGACCGATTTCTTGTTAATGAGCG
CCAAGTCACTTGTGCTGCTGGATATGTCTGGCTTACTCGTGAAACTGCTG
TGACCAATGCTCTAGAACATTGCTGCGCAGCAGTTTGTGACACATTTTCT
CTATTATCAACGTCGGCTGATCCCTTCCCGCACGAAGAATGCTGTTATCG
CTGCAATGAGAATCATGGCTGTCCAAGTGGGCTACAGGAGTCTGACATTT
TTGATAATGATAATACGTATGTGATTGTTCCCGAGTATGGTGAACAATCC
CAACAAACAGTTACAATGATTGATATTTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1376099..1377478-

>Gvermi12750.t1 ID=Gvermi12750.t1|Name=Gvermi12750.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1380bp|location=Sequence derived from alignment at ScGOVlb_425:1376099..1377478- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGTCTTTGCTTTTTTCCTTTCGGGGTTATTGACTGCTTTCTTTGC
CGGCTCTGGTTTGTCAACAGCTGTAGAACTTCATGCAGCACAGCGATCTA
CCACCACATCGTGCCAGTCCATACGAAGTGCTATGATGGAAGCCTACTAC
GCTCAGGTCGGCCTTATTCGTCGTGGGCTACCAGTGAGGGTGGCCCAATC
GGAATTTGTCTATGCCGCCAACTATTACGCCGCATACAGCTCGTATTTCA
CTTACTACAATCTAAATACCACATGTGTATGGACAAATCTTTGGTATAAT
CTCTTCGACTATCAGAACAGAGCTAGATGGGCATTAGATTATCTTAAGCA
GATTAGGATATTGAACTCGGAGATCAACTTTCTGAACTTCACACAATATC
CGACTTTGCCGCATATGGATCCCAGTGATGAAGCCTATGCGCATGATCTT
TGGTTTGCTATCGATCACCGTTTGAAGACCACGCCAAGAGGAAATTATGT
GTTCGAGGACTTTAAGTTTCCAAACAATGTCGCGATTTTATACGACCCAG
AAAAGGATTTGGCATGCTCTGAGTATCAGAAGTTTGGTCCTTTGACGACC
ACTAATTCTGTGCCAGCTACGAAAGCACTTGTAGCATTAGGGATGGCATC
GATCAAGATGTATCGGATCGGTGCCTCAAAACCTTTAATCTCACAAATGC
TACAGCATTTTGTGGGATTTTCGTTCAATGGAGTCCGTTGTACCAGAACC
GAAAAAGAGTCTTTGAGTATTCCGGTACGCTTAATAGAAGCGTACTCAAG
GAACTTGGGCTTCATTTATGCATCATCCACAAAGGCTCCCTTACCAACGT
TCTCTGTCGAAGCGTTTGAGACTGTTTTTGATGATGAAATTAGCTCATTA
TCTTCATACAACTCATGGGGCCATACAAAGTTCGCCAAGCTCGTTGGAAG
ATACTCAATTCCTGCAATAGTGAACTCAGTCGATACTTTTCTGGACGACG
CGAATTACCAAGCTCTGATTTCTGCTTCCTCGGGCAGCACATCGACTATT
CCTGATGAAGAACTGGATGAAATAGATGACCGATTTCTTGTTAATGAGCG
CCAAGTCACTTGTGCTGCTGGATATGTCTGGCTTACTCGTGAAACTGCTG
TGACCAATGCTCTAGAACATTGCTGCGCAGCAGTTTGTGACACATTTTCT
CTATTATCAACGTCGGCTGATCCCTTCCCGCACGAAGAATGCTGTTATCG
CTGCAATGAGAATCATGGCTGTCCAAGTGGGCTACAGGAGTCTGACATTT
TTGATAATGATAATACGTATGTGATTGTTCCCGAGTATGGTGAACAATCC
CAACAAACAGTTACAATGATTGATATTTAA
back to top