Gvermi12748.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12748.t1
Unique Name	Gvermi12748.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	522

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1370652..1372217 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMC180CT
Preferred name	PDI1
PFAMs	Thioredoxin,Thioredoxin_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01829,ko:K09580,ko:K09584
KEGG Pathway	ko04141,map04141
GOs	GO:0000003,GO:0001666,GO:0003674,GO:0003756,GO:0003824,GO:0004656,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005793,GO:0005886,GO:0006082,GO:0006457,GO:0006464,GO:0006508,GO:0006511,GO:0006516,GO:0006517,GO:0006520,GO:0006575,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009628,GO:0009897,GO:0009966,GO:0009986,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010646,GO:0010941,GO:0012505,GO:0015035,GO:0015036,GO:0015037,GO:0016020,GO:0016043,GO:0016222,GO:0016491,GO:0016667,GO:0016671,GO:0016705,GO:0016706,GO:0016853,GO:0016860,GO:0016864,GO:0018126,GO:0018193,GO:0018208,GO:0018401,GO:0019153,GO:0019221,GO:0019471,GO:0019511,GO:0019538,GO:0019752,GO:0019798,GO:0019941,GO:0019953,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030163,GO:0030433,GO:0031543,GO:0031545,GO:0031974,GO:0032501,GO:0032991,GO:0033554,GO:0034097,GO:0034377,GO:0034378,GO:0034379,GO:0034975,GO:0034976,GO:0035722,GO:0035977,GO:0036211,GO:0036293,GO:0036294,GO:0036503,GO:0036507,GO:0036508,GO:0038155,GO:0042221,GO:0042981,GO:0043062,GO:0043067,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043632,GO:0043687,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044877,GO:0046596,GO:0046598,GO:0046982,GO:0046983,GO:0048518,GO:0048524,GO:0048583,GO:0050789,GO:0050792,GO:0050794,GO:0050839,GO:0050896,GO:0051082,GO:0051213,GO:0051603,GO:0051704,GO:0051716,GO:0055114,GO:0065003,GO:0065005,GO:0065007,GO:0070013,GO:0070482,GO:0070671,GO:0070887,GO:0071310,GO:0071345,GO:0071349,GO:0071453,GO:0071456,GO:0071704,GO:0071825,GO:0071827,GO:0071840,GO:0071944,GO:0080134,GO:0080135,GO:0097006,GO:0097466,GO:0098552,GO:0140096,GO:1900407,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901698,GO:1901700,GO:1902175,GO:1902494,GO:1902531,GO:1902882,GO:1903201,GO:1903900,GO:1903902,GO:1904382,GO:1904587,GO:1990204,GO:2001233,GO:2001242
Evalue	5.91e-86
EggNOG OGs	COG0526@1\|root,KOG0190@2759\|Eukaryota
EC	5.3.4.1
Description	intramolecular oxidoreductase activity, transposing S-S bonds
COG category	CO
BRITE	ko00000,ko00001,ko01000,ko03110,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12748	Gvermi12748	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1370652..1372217 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12748.t1.start1	Gvermi12748.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1370652..1370654 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12748.t1.CDS1	Gvermi12748.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1370652..1372217 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12748.t1.exon1	Gvermi12748.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1370652..1372217 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12748.t1.stop1	Gvermi12748.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1372215..1372217 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12748.t1	Gvermi12748.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1370652..1372217 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1370652..1372217+
coding sequence from alignment at ScGOVlb_425:1370652..1372217+

mRNA sequence

>Gvermi12748.t1 ID=Gvermi12748.t1|Name=Gvermi12748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=522bp
MFSSRLFLLSALAALLFSVSAADDVLKLTKSNFADVIAKEPLVFIKFFAP
WCGHCQSMKEDFEKVATEMKGKAVLADVDATVEEELAKQYNIDGFPTLKL
FSNGEELTDYNGARDKDSIIKFIERATLPPYQALENAEAFTKFTADNSEK
HIIVSAALDSAALSKFKKATFSIRDLMPESFEFAHSDDAATFNIDSMSKG
DVYLLRLESDGTRREMKYDHASDVSLEKFIKAAALPVFQEFTQENAEMYT
ELNMPLVIGFYENCDGEECKALEAIAKKKVDNGKVAFAWVSSVELVSFQE
YVGLKDAAVPICAYSFESDARYLLPEDFKFSGDALETWVDDLIAGKVLPA
RKSEPIPEENEGPVYTVVGDTWDEIVQDTSKDVMIAQVAEWCGHCARLKP
VYAKVAAELKKGGVEHVKMALMEATENDAPEDYKARGFPTIHFFKAGEEQ
KGMEFDGDRSSKGIIEWIQEHTSKKFEFDTSTLGEDPEPEEEEEEDLEDG
GDFDEGDHIEEVEEEDEKTEL*

spliced messenger RNA

>Gvermi12748.t1 ID=Gvermi12748.t1|Name=Gvermi12748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at ScGOVlb_425:1370652..1372217+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCATCCCGCCTCTTTCTGCTCTCCGCTCTGGCAGCGCTGCTTTT
CTCCGTCTCCGCCGCCGACGATGTCCTCAAGCTCACCAAGAGCAACTTCG
CTGATGTTATCGCCAAGGAGCCGCTCGTCTTCATCAAATTTTTCGCCCCA
TGGTGCGGCCACTGCCAGTCCATGAAGGAGGATTTTGAGAAAGTTGCAAC
GGAAATGAAAGGCAAGGCCGTGCTAGCCGATGTCGACGCCACCGTGGAAG
AGGAGCTTGCCAAACAATACAACATCGACGGATTTCCAACGCTCAAGCTC
TTCTCAAATGGCGAAGAACTTACAGACTACAACGGCGCTCGTGATAAGGA
TTCCATAATCAAATTCATCGAGCGCGCAACACTGCCGCCGTATCAGGCCC
TTGAAAATGCCGAAGCGTTCACCAAATTCACCGCCGACAACTCCGAGAAG
CATATAATCGTGTCTGCTGCCTTGGATTCGGCCGCCCTCTCAAAGTTCAA
AAAGGCCACCTTCAGCATTCGCGACCTTATGCCGGAATCGTTTGAGTTTG
CTCATTCGGATGACGCTGCCACTTTCAACATCGATTCCATGTCCAAGGGT
GATGTGTATCTGCTGCGTCTGGAATCGGACGGAACTCGTCGCGAAATGAA
GTATGACCACGCCTCGGACGTCTCCCTCGAGAAGTTCATCAAGGCTGCAG
CCCTTCCGGTTTTCCAGGAGTTTACGCAGGAAAACGCCGAAATGTACACT
GAGCTCAACATGCCGCTTGTGATAGGTTTCTACGAGAACTGCGACGGAGA
AGAGTGCAAAGCTCTTGAGGCGATCGCCAAAAAGAAGGTGGACAATGGTA
AGGTGGCGTTCGCCTGGGTCAGTTCTGTTGAACTGGTCAGCTTTCAGGAA
TACGTGGGTCTCAAGGATGCAGCCGTTCCCATTTGTGCCTACTCTTTCGA
GTCTGATGCGCGCTATCTGCTGCCCGAGGACTTCAAGTTTTCAGGAGACG
CGCTTGAGACATGGGTTGATGATTTGATCGCGGGTAAGGTTTTGCCAGCA
CGGAAATCGGAACCGATCCCGGAGGAGAACGAGGGGCCCGTGTACACTGT
GGTGGGAGACACGTGGGATGAAATTGTGCAGGATACTAGCAAGGACGTGA
TGATTGCGCAGGTGGCTGAATGGTGCGGACATTGTGCCAGGCTGAAGCCA
GTCTATGCTAAGGTGGCTGCGGAACTGAAGAAGGGCGGCGTCGAGCATGT
GAAGATGGCATTAATGGAGGCCACTGAAAATGATGCGCCTGAGGATTACA
AGGCACGTGGATTCCCGACCATCCACTTCTTCAAGGCGGGCGAGGAGCAA
AAGGGCATGGAGTTTGATGGCGACCGCTCATCAAAAGGGATCATCGAGTG
GATTCAAGAGCACACATCGAAGAAGTTCGAGTTCGATACTTCCACATTGG
GCGAAGACCCTGAACCTGAAGAGGAGGAAGAGGAGGACTTAGAAGACGGT
GGAGACTTTGACGAGGGAGACCATATAGAGGAAGTAGAAGAGGAGGACGA
GAAGACAGAATTGTAA

protein sequence of Gvermi12748.t1

>Gvermi12748.t1 ID=Gvermi12748.t1|Name=Gvermi12748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=522bp
MFSSRLFLLSALAALLFSVSAADDVLKLTKSNFADVIAKEPLVFIKFFAP
WCGHCQSMKEDFEKVATEMKGKAVLADVDATVEEELAKQYNIDGFPTLKL
FSNGEELTDYNGARDKDSIIKFIERATLPPYQALENAEAFTKFTADNSEK
HIIVSAALDSAALSKFKKATFSIRDLMPESFEFAHSDDAATFNIDSMSKG
DVYLLRLESDGTRREMKYDHASDVSLEKFIKAAALPVFQEFTQENAEMYT
ELNMPLVIGFYENCDGEECKALEAIAKKKVDNGKVAFAWVSSVELVSFQE
YVGLKDAAVPICAYSFESDARYLLPEDFKFSGDALETWVDDLIAGKVLPA
RKSEPIPEENEGPVYTVVGDTWDEIVQDTSKDVMIAQVAEWCGHCARLKP
VYAKVAAELKKGGVEHVKMALMEATENDAPEDYKARGFPTIHFFKAGEEQ
KGMEFDGDRSSKGIIEWIQEHTSKKFEFDTSTLGEDPEPEEEEEEDLEDG
GDFDEGDHIEEVEEEDEKTEL*

mRNA from alignment at ScGOVlb_425:1370652..1372217+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12748.t1 ID=Gvermi12748.t1|Name=Gvermi12748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1566bp|location=Sequence derived from alignment at ScGOVlb_425:1370652..1372217+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCTCATCCCGCCTCTTTCTGCTCTCCGCTCTGGCAGCGCTGCTTTT
CTCCGTCTCCGCCGCCGACGATGTCCTCAAGCTCACCAAGAGCAACTTCG
CTGATGTTATCGCCAAGGAGCCGCTCGTCTTCATCAAATTTTTCGCCCCA
TGGTGCGGCCACTGCCAGTCCATGAAGGAGGATTTTGAGAAAGTTGCAAC
GGAAATGAAAGGCAAGGCCGTGCTAGCCGATGTCGACGCCACCGTGGAAG
AGGAGCTTGCCAAACAATACAACATCGACGGATTTCCAACGCTCAAGCTC
TTCTCAAATGGCGAAGAACTTACAGACTACAACGGCGCTCGTGATAAGGA
TTCCATAATCAAATTCATCGAGCGCGCAACACTGCCGCCGTATCAGGCCC
TTGAAAATGCCGAAGCGTTCACCAAATTCACCGCCGACAACTCCGAGAAG
CATATAATCGTGTCTGCTGCCTTGGATTCGGCCGCCCTCTCAAAGTTCAA
AAAGGCCACCTTCAGCATTCGCGACCTTATGCCGGAATCGTTTGAGTTTG
CTCATTCGGATGACGCTGCCACTTTCAACATCGATTCCATGTCCAAGGGT
GATGTGTATCTGCTGCGTCTGGAATCGGACGGAACTCGTCGCGAAATGAA
GTATGACCACGCCTCGGACGTCTCCCTCGAGAAGTTCATCAAGGCTGCAG
CCCTTCCGGTTTTCCAGGAGTTTACGCAGGAAAACGCCGAAATGTACACT
GAGCTCAACATGCCGCTTGTGATAGGTTTCTACGAGAACTGCGACGGAGA
AGAGTGCAAAGCTCTTGAGGCGATCGCCAAAAAGAAGGTGGACAATGGTA
AGGTGGCGTTCGCCTGGGTCAGTTCTGTTGAACTGGTCAGCTTTCAGGAA
TACGTGGGTCTCAAGGATGCAGCCGTTCCCATTTGTGCCTACTCTTTCGA
GTCTGATGCGCGCTATCTGCTGCCCGAGGACTTCAAGTTTTCAGGAGACG
CGCTTGAGACATGGGTTGATGATTTGATCGCGGGTAAGGTTTTGCCAGCA
CGGAAATCGGAACCGATCCCGGAGGAGAACGAGGGGCCCGTGTACACTGT
GGTGGGAGACACGTGGGATGAAATTGTGCAGGATACTAGCAAGGACGTGA
TGATTGCGCAGGTGGCTGAATGGTGCGGACATTGTGCCAGGCTGAAGCCA
GTCTATGCTAAGGTGGCTGCGGAACTGAAGAAGGGCGGCGTCGAGCATGT
GAAGATGGCATTAATGGAGGCCACTGAAAATGATGCGCCTGAGGATTACA
AGGCACGTGGATTCCCGACCATCCACTTCTTCAAGGCGGGCGAGGAGCAA
AAGGGCATGGAGTTTGATGGCGACCGCTCATCAAAAGGGATCATCGAGTG
GATTCAAGAGCACACATCGAAGAAGTTCGAGTTCGATACTTCCACATTGG
GCGAAGACCCTGAACCTGAAGAGGAGGAAGAGGAGGACTTAGAAGACGGT
GGAGACTTTGACGAGGGAGACCATATAGAGGAAGTAGAAGAGGAGGACGA
GAAGACAGAATTGTAA

Coding sequence (CDS) from alignment at ScGOVlb_425:1370652..1372217+

>Gvermi12748.t1 ID=Gvermi12748.t1|Name=Gvermi12748.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1566bp|location=Sequence derived from alignment at ScGOVlb_425:1370652..1372217+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCTCATCCCGCCTCTTTCTGCTCTCCGCTCTGGCAGCGCTGCTTTT
CTCCGTCTCCGCCGCCGACGATGTCCTCAAGCTCACCAAGAGCAACTTCG
CTGATGTTATCGCCAAGGAGCCGCTCGTCTTCATCAAATTTTTCGCCCCA
TGGTGCGGCCACTGCCAGTCCATGAAGGAGGATTTTGAGAAAGTTGCAAC
GGAAATGAAAGGCAAGGCCGTGCTAGCCGATGTCGACGCCACCGTGGAAG
AGGAGCTTGCCAAACAATACAACATCGACGGATTTCCAACGCTCAAGCTC
TTCTCAAATGGCGAAGAACTTACAGACTACAACGGCGCTCGTGATAAGGA
TTCCATAATCAAATTCATCGAGCGCGCAACACTGCCGCCGTATCAGGCCC
TTGAAAATGCCGAAGCGTTCACCAAATTCACCGCCGACAACTCCGAGAAG
CATATAATCGTGTCTGCTGCCTTGGATTCGGCCGCCCTCTCAAAGTTCAA
AAAGGCCACCTTCAGCATTCGCGACCTTATGCCGGAATCGTTTGAGTTTG
CTCATTCGGATGACGCTGCCACTTTCAACATCGATTCCATGTCCAAGGGT
GATGTGTATCTGCTGCGTCTGGAATCGGACGGAACTCGTCGCGAAATGAA
GTATGACCACGCCTCGGACGTCTCCCTCGAGAAGTTCATCAAGGCTGCAG
CCCTTCCGGTTTTCCAGGAGTTTACGCAGGAAAACGCCGAAATGTACACT
GAGCTCAACATGCCGCTTGTGATAGGTTTCTACGAGAACTGCGACGGAGA
AGAGTGCAAAGCTCTTGAGGCGATCGCCAAAAAGAAGGTGGACAATGGTA
AGGTGGCGTTCGCCTGGGTCAGTTCTGTTGAACTGGTCAGCTTTCAGGAA
TACGTGGGTCTCAAGGATGCAGCCGTTCCCATTTGTGCCTACTCTTTCGA
GTCTGATGCGCGCTATCTGCTGCCCGAGGACTTCAAGTTTTCAGGAGACG
CGCTTGAGACATGGGTTGATGATTTGATCGCGGGTAAGGTTTTGCCAGCA
CGGAAATCGGAACCGATCCCGGAGGAGAACGAGGGGCCCGTGTACACTGT
GGTGGGAGACACGTGGGATGAAATTGTGCAGGATACTAGCAAGGACGTGA
TGATTGCGCAGGTGGCTGAATGGTGCGGACATTGTGCCAGGCTGAAGCCA
GTCTATGCTAAGGTGGCTGCGGAACTGAAGAAGGGCGGCGTCGAGCATGT
GAAGATGGCATTAATGGAGGCCACTGAAAATGATGCGCCTGAGGATTACA
AGGCACGTGGATTCCCGACCATCCACTTCTTCAAGGCGGGCGAGGAGCAA
AAGGGCATGGAGTTTGATGGCGACCGCTCATCAAAAGGGATCATCGAGTG
GATTCAAGAGCACACATCGAAGAAGTTCGAGTTCGATACTTCCACATTGG
GCGAAGACCCTGAACCTGAAGAGGAGGAAGAGGAGGACTTAGAAGACGGT
GGAGACTTTGACGAGGGAGACCATATAGAGGAAGTAGAAGAGGAGGACGA
GAAGACAGAATTGTAA