Gvermi12747.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12747.t1
Unique NameGvermi12747.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length377
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1368449..1369868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12747Gvermi12747Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1368449..1369868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12747.t1Gvermi12747.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1368449..1369868 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12747.t1.stop1Gvermi12747.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1368449..1368451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12747.t1.CDS1Gvermi12747.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1368449..1369069 -
Gvermi12747.t1.CDS2Gvermi12747.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1369359..1369868 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12747.t1.exon1Gvermi12747.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1368449..1369069 -
Gvermi12747.t1.exon2Gvermi12747.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1369359..1369868 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12747.t1.intron1Gvermi12747.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1369070..1369358 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12747.t1.start1Gvermi12747.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1369866..1369868 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12747.t1 ID=Gvermi12747.t1|Name=Gvermi12747.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=377bp
MMSSNLRSRAVRPSHAKQHPESLNFHNPRLNLSVDSYNALVVSVAAFVLL
LFGFYSLSLFSANHDIVGLHPPLSLHREIGDHFHSHSNRPDWHDTHYDPP
LDEQWQHDHHHRADDEYRDYYEQHPPLEEEHYDPAHDEDKLRYQDYHHDD
YHQQQQPHQPPTTQELNDHVKSTTRMSITRVTIMMANTMRMSTMQASTIQ
VSTMRPNTMLVSTTQASTMRPNTKRASTTQASTIQASTIQASIMQASIMQ
ASTTQSSTTQASIMQARIMLASTTQVTMITLTAPTIMLIQITNDRMSILE
KHIGPLTLPNHPILGISKLHNNKVTIITKRAQKMALDIEHIDTQEFILLP
TTFEKLIDMQLLMSASTRAPPLNPML*
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spliced messenger RNA

>Gvermi12747.t1 ID=Gvermi12747.t1|Name=Gvermi12747.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1131bp|location=Sequence derived from alignment at ScGOVlb_425:1368449..1369868- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCGTCTAACCTCCGCAGTCGCGCCGTCAGACCGTCTCACGCCAA
GCAGCATCCCGAGTCGCTCAATTTTCACAACCCCCGCTTGAATCTGTCCG
TCGACTCGTACAACGCCCTCGTCGTCTCTGTCGCAGCCTTCGTCCTTCTC
TTGTTTGGATTTTATTCCCTGTCGCTCTTCTCTGCAAATCACGACATTGT
TGGCTTACATCCTCCCCTGTCCTTGCACAGGGAGATTGGAGATCATTTTC
ACTCGCACTCCAATCGCCCTGACTGGCATGATACCCATTACGATCCTCCG
CTGGACGAGCAGTGGCAGCACGACCACCACCATCGGGCTGACGACGAGTA
TCGCGACTACTACGAACAACATCCGCCGCTTGAGGAAGAGCACTACGACC
CGGCTCACGATGAGGACAAACTTCGTTACCAAGACTATCATCATGATGAT
TACCACCAACAACAGCAACCCCACCAACCACCTACTACTCAGGAACTGAA
CGATCATGTCAAGAGCACCACGCGGATGAGCATCACCCGGGTGACCATCA
TGATGGCGAACACCATGCGGATGAGCACCATGCAGGCGAGCACCATTCAG
GTGAGCACCATGCGGCCGAACACCATGCTGGTGAGCACCACGCAGGCGAG
CACCATGCGGCCGAACACCAAGCGGGCGAGCACCACGCAGGCGAGTACCA
TTCAGGCGAGTACCATTCAGGCGAGCATCATGCAGGCGAGCATCATGCAG
GCGAGCACCACGCAGTCGAGCACCACGCAGGCGAGCATCATGCAGGCGAG
AATCATGCTGGCGAGCACCACGCAGGTGACCATGATTACACTGACCGCAC
CCACAATCATGCTAATTCAGATTACAAACGACCGAATGAGCATTCTGGAG
AAGCATATCGGTCCCCTAACTCTGCCAAATCACCCCATTCTGGGCATCTC
AAAACTTCACAACAACAAGGTCACAATCATCACGAAAAGGGCTCAAAAGA
TGGCCCTAGACATAGAGCACATAGATACCCAGGAGTTCATTTTGCTCCCG
ACGACTTTTGAAAAGCTCATCGATATGCAATTGCTCATGAGCGCCTCAAC
ACGTGCCCCGCCATTGAACCCCATGCTGTGA
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protein sequence of Gvermi12747.t1

>Gvermi12747.t1 ID=Gvermi12747.t1|Name=Gvermi12747.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=377bp
MMSSNLRSRAVRPSHAKQHPESLNFHNPRLNLSVDSYNALVVSVAAFVLL
LFGFYSLSLFSANHDIVGLHPPLSLHREIGDHFHSHSNRPDWHDTHYDPP
LDEQWQHDHHHRADDEYRDYYEQHPPLEEEHYDPAHDEDKLRYQDYHHDD
YHQQQQPHQPPTTQELNDHVKSTTRMSITRVTIMMANTMRMSTMQASTIQ
VSTMRPNTMLVSTTQASTMRPNTKRASTTQASTIQASTIQASIMQASIMQ
ASTTQSSTTQASIMQARIMLASTTQVTMITLTAPTIMLIQITNDRMSILE
KHIGPLTLPNHPILGISKLHNNKVTIITKRAQKMALDIEHIDTQEFILLP
TTFEKLIDMQLLMSASTRAPPLNPML*
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mRNA from alignment at ScGOVlb_425:1368449..1369868-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12747.t1 ID=Gvermi12747.t1|Name=Gvermi12747.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1420bp|location=Sequence derived from alignment at ScGOVlb_425:1368449..1369868- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGTCGTCTAACCTCCGCAGTCGCGCCGTCAGACCGTCTCACGCCAA
GCAGCATCCCGAGTCGCTCAATTTTCACAACCCCCGCTTGAATCTGTCCG
TCGACTCGTACAACGCCCTCGTCGTCTCTGTCGCAGCCTTCGTCCTTCTC
TTGTTTGGATTTTATTCCCTGTCGCTCTTCTCTGCAAATCACGACATTGT
TGGCTTACATCCTCCCCTGTCCTTGCACAGGGAGATTGGAGATCATTTTC
ACTCGCACTCCAATCGCCCTGACTGGCATGATACCCATTACGATCCTCCG
CTGGACGAGCAGTGGCAGCACGACCACCACCATCGGGCTGACGACGAGTA
TCGCGACTACTACGAACAACATCCGCCGCTTGAGGAAGAGCACTACGACC
CGGCTCACGATGAGGACAAACTTCGTTACCAAGACTATCATCATGATGAT
TACCACCAACAACAGCAACCCCACCAACCACCTACTACTCAGGAACTGAA
CGATCATGTCGTCGAAGACCGAGCTACGGAAGACCATCCTACCACCCGAC
ATGAACACGATCACCATCTTGAGCATCCTCAACACGAGCAAGAGCCCCCT
CATCATCATGAACAGTATGGCTACTCTGAAGGTCATGAACATGATCACCA
TTACGACGACCACGACCACGATCATGAGCATTATGAAGATCACTACGATG
AGCATGATCCCCATCACCATCATTATGAGCATGACTCACATCATCATGAT
GAACACGGCTATTATGTGCAGGAACACCAATCTGATGAGCGCCACTCAGA
AGAGCACCACGCGGATGAGCATCACCCGGGTGACCATCATGATGGCGAAC
ACCATGCGGATGAGCACCATGCAGGCGAGCACCATTCAGGTGAGCACCAT
GCGGCCGAACACCATGCTGGTGAGCACCACGCAGGCGAGCACCATGCGGC
CGAACACCAAGCGGGCGAGCACCACGCAGGCGAGTACCATTCAGGCGAGT
ACCATTCAGGCGAGCATCATGCAGGCGAGCATCATGCAGGCGAGCACCAC
GCAGTCGAGCACCACGCAGGCGAGCATCATGCAGGCGAGAATCATGCTGG
CGAGCACCACGCAGGTGACCATGATTACACTGACCGCACCCACAATCATG
CTAATTCAGATTACAAACGACCGAATGAGCATTCTGGAGAAGCATATCGG
TCCCCTAACTCTGCCAAATCACCCCATTCTGGGCATCTCAAAACTTCACA
ACAACAAGGTCACAATCATCACGAAAAGGGCTCAAAAGATGGCCCTAGAC
ATAGAGCACATAGATACCCAGGAGTTCATTTTGCTCCCGACGACTTTTGA
AAAGCTCATCGATATGCAATTGCTCATGAGCGCCTCAACACGTGCCCCGC
CATTGAACCCCATGCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1368449..1369868-

>Gvermi12747.t1 ID=Gvermi12747.t1|Name=Gvermi12747.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1131bp|location=Sequence derived from alignment at ScGOVlb_425:1368449..1369868- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGTCGTCTAACCTCCGCAGTCGCGCCGTCAGACCGTCTCACGCCAA
GCAGCATCCCGAGTCGCTCAATTTTCACAACCCCCGCTTGAATCTGTCCG
TCGACTCGTACAACGCCCTCGTCGTCTCTGTCGCAGCCTTCGTCCTTCTC
TTGTTTGGATTTTATTCCCTGTCGCTCTTCTCTGCAAATCACGACATTGT
TGGCTTACATCCTCCCCTGTCCTTGCACAGGGAGATTGGAGATCATTTTC
ACTCGCACTCCAATCGCCCTGACTGGCATGATACCCATTACGATCCTCCG
CTGGACGAGCAGTGGCAGCACGACCACCACCATCGGGCTGACGACGAGTA
TCGCGACTACTACGAACAACATCCGCCGCTTGAGGAAGAGCACTACGACC
CGGCTCACGATGAGGACAAACTTCGTTACCAAGACTATCATCATGATGAT
TACCACCAACAACAGCAACCCCACCAACCACCTACTACTCAGGAACTGAA
CGATCATGTCAAGAGCACCACGCGGATGAGCATCACCCGGGTGACCATCA
TGATGGCGAACACCATGCGGATGAGCACCATGCAGGCGAGCACCATTCAG
GTGAGCACCATGCGGCCGAACACCATGCTGGTGAGCACCACGCAGGCGAG
CACCATGCGGCCGAACACCAAGCGGGCGAGCACCACGCAGGCGAGTACCA
TTCAGGCGAGTACCATTCAGGCGAGCATCATGCAGGCGAGCATCATGCAG
GCGAGCACCACGCAGTCGAGCACCACGCAGGCGAGCATCATGCAGGCGAG
AATCATGCTGGCGAGCACCACGCAGGTGACCATGATTACACTGACCGCAC
CCACAATCATGCTAATTCAGATTACAAACGACCGAATGAGCATTCTGGAG
AAGCATATCGGTCCCCTAACTCTGCCAAATCACCCCATTCTGGGCATCTC
AAAACTTCACAACAACAAGGTCACAATCATCACGAAAAGGGCTCAAAAGA
TGGCCCTAGACATAGAGCACATAGATACCCAGGAGTTCATTTTGCTCCCG
ACGACTTTTGAAAAGCTCATCGATATGCAATTGCTCATGAGCGCCTCAAC
ACGTGCCCCGCCATTGAACCCCATGCTGTGA
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