Gvermi12746.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12746.t1
Unique NameGvermi12746.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length576
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1364901..1366628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12746Gvermi12746Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1364901..1366628 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12746.t1.stop1Gvermi12746.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1364901..1364903 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12746.t1.CDS1Gvermi12746.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1364901..1366628 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12746.t1.exon1Gvermi12746.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1364901..1366628 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12746.t1.start1Gvermi12746.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1366626..1366628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12746.t1Gvermi12746.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1364901..1366628 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12746.t1 ID=Gvermi12746.t1|Name=Gvermi12746.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=576bp
MTCRLIRRWAFLFVWAMLFGFIQGSENKEPSLSLKTLAQVKKAIEHLSLK
DKNRFVNNNVSVWNLHFLKHIADMKDLSEKTIQDELSPSPEADVDNPTNT
SKRAAEQIDTEVKGDKPKGKENTSIARMVREMIKAVGEASQKRATQSFIR
IGKADIPREKVTAVGDVDGNGFEDYIVSNPGSMNDTGTIRLYLMTDDHRF
LYTRDLVPGKYGFTGPPLTPGDRFGAKVEKISSDTPNFSFVTITAPGDRS
VAGKKGAFYILQLSDKGNVINSAKFSAKTIEKVVANPAAKNRIQDAQELN
RSILSQKIVEILSNKTSMLLVRKEGEVKGAYVITSPEDHKLLHEIEGKMT
PRKRLASLRLDSPLVRTDVSSGCFFNETHCACASKAVAVGSAQCTRVVGT
EQSSGRTLCQTRDCMASHSCVCDGSELCVRTERTLTSYVPDGAAAGGNVY
CTAVQKTITENVLIPDAQVPVILSVNDLPPYNATHCRCAGKQAVTGGATC
LDVLRQLSGDNYVCSERACRIGAGEYICDAFGDSYCSRSFVDKVHYVKDG
EKSDEAGAVFCHREAYQAESVVKIL*
back to top

spliced messenger RNA

>Gvermi12746.t1 ID=Gvermi12746.t1|Name=Gvermi12746.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1728bp|location=Sequence derived from alignment at ScGOVlb_425:1364901..1366628- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTGCAGGCTGATCCGCCGTTGGGCGTTCCTTTTTGTATGGGCGAT
GCTCTTTGGATTTATACAAGGCAGCGAAAACAAAGAACCATCGCTGAGTT
TGAAGACCTTAGCCCAGGTGAAAAAAGCGATAGAGCATCTCAGCTTGAAG
GACAAGAACCGCTTCGTGAACAACAATGTTTCTGTGTGGAATCTGCACTT
CCTGAAGCATATCGCAGATATGAAAGATCTCTCGGAGAAAACCATTCAAG
ATGAACTTTCCCCATCGCCCGAAGCCGATGTTGACAATCCCACAAACACT
TCCAAAAGAGCAGCCGAGCAAATTGACACAGAAGTGAAAGGAGATAAACC
AAAAGGAAAAGAAAATACTTCTATCGCTCGCATGGTGAGGGAAATGATCA
AAGCTGTCGGAGAAGCATCGCAGAAACGAGCTACACAATCATTCATTCGA
ATTGGAAAGGCAGACATCCCGCGCGAAAAGGTGACCGCAGTCGGAGACGT
TGATGGAAACGGGTTCGAAGATTACATCGTGTCTAACCCGGGGTCCATGA
ATGATACTGGAACCATTCGTCTCTATCTGATGACCGATGACCACAGGTTC
TTGTACACGAGAGATCTCGTCCCAGGAAAATATGGGTTCACTGGTCCGCC
GCTTACTCCTGGAGATCGATTCGGTGCTAAGGTGGAGAAGATTTCAAGCG
ATACGCCCAACTTTTCGTTTGTGACCATCACTGCTCCTGGAGATCGCTCC
GTGGCTGGAAAAAAGGGAGCATTCTACATTCTGCAGTTGTCTGACAAGGG
GAACGTGATCAACAGTGCCAAGTTTTCGGCCAAGACCATTGAAAAAGTTG
TGGCGAATCCCGCCGCAAAGAACAGAATCCAGGACGCACAAGAGCTGAAC
CGTTCGATCCTCTCCCAGAAGATTGTGGAAATCCTGAGCAACAAAACGTC
CATGCTGCTCGTGCGAAAGGAGGGAGAAGTGAAGGGCGCATACGTGATCA
CTTCGCCCGAGGACCACAAGCTGTTGCACGAAATCGAAGGGAAGATGACG
CCCCGAAAGCGGCTCGCATCGCTTCGCCTGGACTCGCCGCTGGTGCGCAC
GGACGTGTCGAGCGGCTGTTTCTTCAACGAAACACACTGTGCATGCGCGT
CGAAGGCCGTTGCGGTGGGCTCTGCGCAATGCACGCGCGTGGTCGGCACG
GAGCAGTCGTCGGGAAGGACGCTGTGCCAGACGCGGGACTGCATGGCGTC
GCACTCGTGCGTGTGCGACGGAAGCGAGCTGTGCGTGCGCACGGAACGGA
CGTTGACGTCGTACGTGCCAGACGGCGCGGCGGCGGGGGGCAATGTGTAC
TGCACCGCCGTGCAGAAGACGATCACGGAAAACGTGCTGATTCCCGACGC
GCAGGTGCCGGTGATTCTGAGCGTGAATGACTTGCCGCCGTACAACGCGA
CGCACTGTCGCTGCGCTGGCAAGCAAGCCGTGACTGGCGGCGCGACCTGT
TTGGACGTGCTTCGCCAACTGAGTGGTGACAATTACGTATGTTCAGAGAG
GGCGTGCAGGATCGGCGCCGGCGAGTATATTTGTGACGCGTTTGGGGACT
CGTACTGCAGCCGCAGCTTTGTTGACAAAGTTCATTACGTGAAAGACGGC
GAGAAGAGCGACGAGGCCGGGGCGGTGTTTTGCCATCGCGAGGCATACCA
AGCAGAAAGCGTTGTGAAGATATTATAA
back to top

protein sequence of Gvermi12746.t1

>Gvermi12746.t1 ID=Gvermi12746.t1|Name=Gvermi12746.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=576bp
MTCRLIRRWAFLFVWAMLFGFIQGSENKEPSLSLKTLAQVKKAIEHLSLK
DKNRFVNNNVSVWNLHFLKHIADMKDLSEKTIQDELSPSPEADVDNPTNT
SKRAAEQIDTEVKGDKPKGKENTSIARMVREMIKAVGEASQKRATQSFIR
IGKADIPREKVTAVGDVDGNGFEDYIVSNPGSMNDTGTIRLYLMTDDHRF
LYTRDLVPGKYGFTGPPLTPGDRFGAKVEKISSDTPNFSFVTITAPGDRS
VAGKKGAFYILQLSDKGNVINSAKFSAKTIEKVVANPAAKNRIQDAQELN
RSILSQKIVEILSNKTSMLLVRKEGEVKGAYVITSPEDHKLLHEIEGKMT
PRKRLASLRLDSPLVRTDVSSGCFFNETHCACASKAVAVGSAQCTRVVGT
EQSSGRTLCQTRDCMASHSCVCDGSELCVRTERTLTSYVPDGAAAGGNVY
CTAVQKTITENVLIPDAQVPVILSVNDLPPYNATHCRCAGKQAVTGGATC
LDVLRQLSGDNYVCSERACRIGAGEYICDAFGDSYCSRSFVDKVHYVKDG
EKSDEAGAVFCHREAYQAESVVKIL*
back to top

mRNA from alignment at ScGOVlb_425:1364901..1366628-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12746.t1 ID=Gvermi12746.t1|Name=Gvermi12746.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1728bp|location=Sequence derived from alignment at ScGOVlb_425:1364901..1366628- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTGCAGGCTGATCCGCCGTTGGGCGTTCCTTTTTGTATGGGCGAT
GCTCTTTGGATTTATACAAGGCAGCGAAAACAAAGAACCATCGCTGAGTT
TGAAGACCTTAGCCCAGGTGAAAAAAGCGATAGAGCATCTCAGCTTGAAG
GACAAGAACCGCTTCGTGAACAACAATGTTTCTGTGTGGAATCTGCACTT
CCTGAAGCATATCGCAGATATGAAAGATCTCTCGGAGAAAACCATTCAAG
ATGAACTTTCCCCATCGCCCGAAGCCGATGTTGACAATCCCACAAACACT
TCCAAAAGAGCAGCCGAGCAAATTGACACAGAAGTGAAAGGAGATAAACC
AAAAGGAAAAGAAAATACTTCTATCGCTCGCATGGTGAGGGAAATGATCA
AAGCTGTCGGAGAAGCATCGCAGAAACGAGCTACACAATCATTCATTCGA
ATTGGAAAGGCAGACATCCCGCGCGAAAAGGTGACCGCAGTCGGAGACGT
TGATGGAAACGGGTTCGAAGATTACATCGTGTCTAACCCGGGGTCCATGA
ATGATACTGGAACCATTCGTCTCTATCTGATGACCGATGACCACAGGTTC
TTGTACACGAGAGATCTCGTCCCAGGAAAATATGGGTTCACTGGTCCGCC
GCTTACTCCTGGAGATCGATTCGGTGCTAAGGTGGAGAAGATTTCAAGCG
ATACGCCCAACTTTTCGTTTGTGACCATCACTGCTCCTGGAGATCGCTCC
GTGGCTGGAAAAAAGGGAGCATTCTACATTCTGCAGTTGTCTGACAAGGG
GAACGTGATCAACAGTGCCAAGTTTTCGGCCAAGACCATTGAAAAAGTTG
TGGCGAATCCCGCCGCAAAGAACAGAATCCAGGACGCACAAGAGCTGAAC
CGTTCGATCCTCTCCCAGAAGATTGTGGAAATCCTGAGCAACAAAACGTC
CATGCTGCTCGTGCGAAAGGAGGGAGAAGTGAAGGGCGCATACGTGATCA
CTTCGCCCGAGGACCACAAGCTGTTGCACGAAATCGAAGGGAAGATGACG
CCCCGAAAGCGGCTCGCATCGCTTCGCCTGGACTCGCCGCTGGTGCGCAC
GGACGTGTCGAGCGGCTGTTTCTTCAACGAAACACACTGTGCATGCGCGT
CGAAGGCCGTTGCGGTGGGCTCTGCGCAATGCACGCGCGTGGTCGGCACG
GAGCAGTCGTCGGGAAGGACGCTGTGCCAGACGCGGGACTGCATGGCGTC
GCACTCGTGCGTGTGCGACGGAAGCGAGCTGTGCGTGCGCACGGAACGGA
CGTTGACGTCGTACGTGCCAGACGGCGCGGCGGCGGGGGGCAATGTGTAC
TGCACCGCCGTGCAGAAGACGATCACGGAAAACGTGCTGATTCCCGACGC
GCAGGTGCCGGTGATTCTGAGCGTGAATGACTTGCCGCCGTACAACGCGA
CGCACTGTCGCTGCGCTGGCAAGCAAGCCGTGACTGGCGGCGCGACCTGT
TTGGACGTGCTTCGCCAACTGAGTGGTGACAATTACGTATGTTCAGAGAG
GGCGTGCAGGATCGGCGCCGGCGAGTATATTTGTGACGCGTTTGGGGACT
CGTACTGCAGCCGCAGCTTTGTTGACAAAGTTCATTACGTGAAAGACGGC
GAGAAGAGCGACGAGGCCGGGGCGGTGTTTTGCCATCGCGAGGCATACCA
AGCAGAAAGCGTTGTGAAGATATTATAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1364901..1366628-

>Gvermi12746.t1 ID=Gvermi12746.t1|Name=Gvermi12746.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1728bp|location=Sequence derived from alignment at ScGOVlb_425:1364901..1366628- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTGCAGGCTGATCCGCCGTTGGGCGTTCCTTTTTGTATGGGCGAT
GCTCTTTGGATTTATACAAGGCAGCGAAAACAAAGAACCATCGCTGAGTT
TGAAGACCTTAGCCCAGGTGAAAAAAGCGATAGAGCATCTCAGCTTGAAG
GACAAGAACCGCTTCGTGAACAACAATGTTTCTGTGTGGAATCTGCACTT
CCTGAAGCATATCGCAGATATGAAAGATCTCTCGGAGAAAACCATTCAAG
ATGAACTTTCCCCATCGCCCGAAGCCGATGTTGACAATCCCACAAACACT
TCCAAAAGAGCAGCCGAGCAAATTGACACAGAAGTGAAAGGAGATAAACC
AAAAGGAAAAGAAAATACTTCTATCGCTCGCATGGTGAGGGAAATGATCA
AAGCTGTCGGAGAAGCATCGCAGAAACGAGCTACACAATCATTCATTCGA
ATTGGAAAGGCAGACATCCCGCGCGAAAAGGTGACCGCAGTCGGAGACGT
TGATGGAAACGGGTTCGAAGATTACATCGTGTCTAACCCGGGGTCCATGA
ATGATACTGGAACCATTCGTCTCTATCTGATGACCGATGACCACAGGTTC
TTGTACACGAGAGATCTCGTCCCAGGAAAATATGGGTTCACTGGTCCGCC
GCTTACTCCTGGAGATCGATTCGGTGCTAAGGTGGAGAAGATTTCAAGCG
ATACGCCCAACTTTTCGTTTGTGACCATCACTGCTCCTGGAGATCGCTCC
GTGGCTGGAAAAAAGGGAGCATTCTACATTCTGCAGTTGTCTGACAAGGG
GAACGTGATCAACAGTGCCAAGTTTTCGGCCAAGACCATTGAAAAAGTTG
TGGCGAATCCCGCCGCAAAGAACAGAATCCAGGACGCACAAGAGCTGAAC
CGTTCGATCCTCTCCCAGAAGATTGTGGAAATCCTGAGCAACAAAACGTC
CATGCTGCTCGTGCGAAAGGAGGGAGAAGTGAAGGGCGCATACGTGATCA
CTTCGCCCGAGGACCACAAGCTGTTGCACGAAATCGAAGGGAAGATGACG
CCCCGAAAGCGGCTCGCATCGCTTCGCCTGGACTCGCCGCTGGTGCGCAC
GGACGTGTCGAGCGGCTGTTTCTTCAACGAAACACACTGTGCATGCGCGT
CGAAGGCCGTTGCGGTGGGCTCTGCGCAATGCACGCGCGTGGTCGGCACG
GAGCAGTCGTCGGGAAGGACGCTGTGCCAGACGCGGGACTGCATGGCGTC
GCACTCGTGCGTGTGCGACGGAAGCGAGCTGTGCGTGCGCACGGAACGGA
CGTTGACGTCGTACGTGCCAGACGGCGCGGCGGCGGGGGGCAATGTGTAC
TGCACCGCCGTGCAGAAGACGATCACGGAAAACGTGCTGATTCCCGACGC
GCAGGTGCCGGTGATTCTGAGCGTGAATGACTTGCCGCCGTACAACGCGA
CGCACTGTCGCTGCGCTGGCAAGCAAGCCGTGACTGGCGGCGCGACCTGT
TTGGACGTGCTTCGCCAACTGAGTGGTGACAATTACGTATGTTCAGAGAG
GGCGTGCAGGATCGGCGCCGGCGAGTATATTTGTGACGCGTTTGGGGACT
CGTACTGCAGCCGCAGCTTTGTTGACAAAGTTCATTACGTGAAAGACGGC
GAGAAGAGCGACGAGGCCGGGGCGGTGTTTTGCCATCGCGAGGCATACCA
AGCAGAAAGCGTTGTGAAGATATTATAA
back to top