Gvermi12740.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12740.t1
Unique NameGvermi12740.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1357781..1358251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173025.GEI7407_0661
Preferred namecpcT
PFAMsCpeT
Max annot lvl1117|Cyanobacteria
KEGG koko:K05383
KEGG Pathwayko00196,ko01100,map00196,map01100
GOsGO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0017006,GO:0017007,GO:0017009,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564
Evalue3.18e-21
EggNOG OGs2CCNY@1|root,2Z877@2|Bacteria,1G0J1@1117|Cyanobacteria,1H7CY@1150|Oscillatoriales
DescriptionCovalently attaches a chromophore to Cys residue(s) of phycobiliproteins
COG categoryE
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12740Gvermi12740Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1357781..1358251 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12740.t1.start1Gvermi12740.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1357781..1357783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12740.t1.CDS1Gvermi12740.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1357781..1358251 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12740.t1.exon1Gvermi12740.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1357781..1358251 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12740.t1.stop1Gvermi12740.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1358249..1358251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12740.t1Gvermi12740.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1357781..1358251 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12740.t1 ID=Gvermi12740.t1|Name=Gvermi12740.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=157bp
LGAPYKTSVVRIEHDGRGHLELASYKLAQPEEFWMGAYEPALLRPLTAHM
LRRMPDACNTLFEWQPHQRVYRARSRPGKGCRIRRRGDHNDSYLDSNIML
AEDCYAAWDVGRDPQTDQRVWGTPAGPFVFDAVTRLHHLVPEEEQPELAS
SATHPQ*
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spliced messenger RNA

>Gvermi12740.t1 ID=Gvermi12740.t1|Name=Gvermi12740.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=471bp|location=Sequence derived from alignment at ScGOVlb_425:1357781..1358251+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ctgggcgcgccCTACAAGACGTCCGTCGTGCGCATCGAGCACGACGGCCG
CGGCCACCTCGAGCTCGCGTCCTACAAGCTCGCGCAGCCCGAGGAGTTCT
GGATGGGCGCCTACGAGCCCGCGCTGCTGCGCCCGCTCACCGCCCACATG
CTGCGCCGCATGCCCGACGCGTGCAACACCCTCTTCGAGTGGCAGCCGCA
CCAGCGCGTGTACAGGGCGCGCTCGCGCCCGGGAAAGGGCTGCCGCATAC
GCCGCCGCGGCGACCACAACGACTCCTACCTCGACTCCAACATCATGCTG
GCCGAGGACTGCTACGCCGCGTGGGACGTGGGCCGCGATCCGCAAACCGA
CCAGAGGGTGTGGGGCACGCCGGCCGGCCCATTTGTTTTTGACGCCGTCA
CCAGATTGCACCATCTCGTCCCGGAGGAGGAACAGCCCGAGCTTGCGAGC
AGCGCCACGCACCCGCAGTAA
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protein sequence of Gvermi12740.t1

>Gvermi12740.t1 ID=Gvermi12740.t1|Name=Gvermi12740.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=157bp
LGAPYKTSVVRIEHDGRGHLELASYKLAQPEEFWMGAYEPALLRPLTAHM
LRRMPDACNTLFEWQPHQRVYRARSRPGKGCRIRRRGDHNDSYLDSNIML
AEDCYAAWDVGRDPQTDQRVWGTPAGPFVFDAVTRLHHLVPEEEQPELAS
SATHPQ*
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mRNA from alignment at ScGOVlb_425:1357781..1358251+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12740.t1 ID=Gvermi12740.t1|Name=Gvermi12740.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=471bp|location=Sequence derived from alignment at ScGOVlb_425:1357781..1358251+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgggcgcgccCTACAAGACGTCCGTCGTGCGCATCGAGCACGACGGCCG
CGGCCACCTCGAGCTCGCGTCCTACAAGCTCGCGCAGCCCGAGGAGTTCT
GGATGGGCGCCTACGAGCCCGCGCTGCTGCGCCCGCTCACCGCCCACATG
CTGCGCCGCATGCCCGACGCGTGCAACACCCTCTTCGAGTGGCAGCCGCA
CCAGCGCGTGTACAGGGCGCGCTCGCGCCCGGGAAAGGGCTGCCGCATAC
GCCGCCGCGGCGACCACAACGACTCCTACCTCGACTCCAACATCATGCTG
GCCGAGGACTGCTACGCCGCGTGGGACGTGGGCCGCGATCCGCAAACCGA
CCAGAGGGTGTGGGGCACGCCGGCCGGCCCATTTGTTTTTGACGCCGTCA
CCAGATTGCACCATCTCGTCCCGGAGGAGGAACAGCCCGAGCTTGCGAGC
AGCGCCACGCACCCGCAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1357781..1358251+

>Gvermi12740.t1 ID=Gvermi12740.t1|Name=Gvermi12740.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=471bp|location=Sequence derived from alignment at ScGOVlb_425:1357781..1358251+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ctgggcgcgccCTACAAGACGTCCGTCGTGCGCATCGAGCACGACGGCCG
CGGCCACCTCGAGCTCGCGTCCTACAAGCTCGCGCAGCCCGAGGAGTTCT
GGATGGGCGCCTACGAGCCCGCGCTGCTGCGCCCGCTCACCGCCCACATG
CTGCGCCGCATGCCCGACGCGTGCAACACCCTCTTCGAGTGGCAGCCGCA
CCAGCGCGTGTACAGGGCGCGCTCGCGCCCGGGAAAGGGCTGCCGCATAC
GCCGCCGCGGCGACCACAACGACTCCTACCTCGACTCCAACATCATGCTG
GCCGAGGACTGCTACGCCGCGTGGGACGTGGGCCGCGATCCGCAAACCGA
CCAGAGGGTGTGGGGCACGCCGGCCGGCCCATTTGTTTTTGACGCCGTCA
CCAGATTGCACCATCTCGTCCCGGAGGAGGAACAGCCCGAGCTTGCGAGC
AGCGCCACGCACCCGCAGTAA
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