Gvermi12739.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12739.t1
Unique NameGvermi12739.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1296206..1297107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12739Gvermi12739Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1296206..1297107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12739.t1Gvermi12739.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1296206..1297107 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12739.t1.start1Gvermi12739.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1296206..1296208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12739.t1.CDS1Gvermi12739.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1296206..1296763 +
Gvermi12739.t1.CDS2Gvermi12739.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1296859..1297107 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12739.t1.exon1Gvermi12739.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1296206..1296763 +
Gvermi12739.t1.exon2Gvermi12739.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1296859..1297107 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12739.t1.intron1Gvermi12739.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1296764..1296858 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12739.t1.stop1Gvermi12739.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1297105..1297107 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12739.t1 ID=Gvermi12739.t1|Name=Gvermi12739.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=269bp
MCPLRVRKSKRSGRETGKVRDLIGRVKIWSHSSSCNGEASILLFDSLSQL
AAETGDLDMSEAQALLVLSQFLKDFALEECRAMGSSLNVDDGGVDRWPNA
VQFFLHQYATPNVIRSATQDLRGVNQKNCENETEFSLRMNIASLNCGKFY
GVDDTMRLYISGLRKSINSPLALHPKRHKCINFLELRSNMLYIESPENTG
VSSQTTAMTNHDAHEAFHYLEEPLRSISTTELLSTKGNKLVVMAKRGYRY
RREGMDPHPGGFTSKKPE*
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spliced messenger RNA

>Gvermi12739.t1 ID=Gvermi12739.t1|Name=Gvermi12739.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=807bp|location=Sequence derived from alignment at ScGOVlb_425:1296206..1297107+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCCCTTACGTGTTCGTAAGTCCAAACGCTCTGGGCGTGAAACTGG
AAAGGTGAGGGATCTCATTGGTCGAGTAAAGATTTGGTCCCATAGCTCCA
GCTGCAACGGGGAGGCATCGATACTTTTGTTTGACTCTCTAAGTCAACTC
GCCGCTGAGACTGGTGACCTAGACATGAGCGAAGCTCAAGCACTGCTGGT
TTTATCCCAGTTCTTGAAGGATTTTGCCCTCGAAGAATGCCGAGCCATGG
GGAGCTCTTTGAACGTGGATGATGGAGGCGTCGATAGATGGCCAAACGCT
GTTCAGTTTTTTCTACATCAATATGCGACTCCCAATGTCATCAGAAGTGC
AACACAAGATCTCAGGGGAGTCAATCAGAAGAATTGTGAAAATGAAACTG
AGTTCAGTTTAAGGATGAATATTGCATCTCTTAATTGCGGAAAGTTTTAC
GGCGTGGATGATACGATGAGGCTTTACATCAGTGGATTGCGGAAGTCTAT
CAATTCTCCTCTTGCACTTCATCCGAAGAGACACAAATGTATCAATTTCC
TTGAACTTCGGAGTAATATGCTGTACATTGAGTCTCCTGAGAATACCGGT
GTTTCTTCGCAGACCACTGCTATGACGAATCACGACGCTCATGAAGCCTT
TCATTATCTAGAGGAGCCCCTTAGATCCATATCAACTACGGAACTACTTT
CAACCAAAGGGAACAAACTGGTGGTCATGGCAAAACGCGGATACCGTTAC
AGGAGAGAAGGAATGGACCCGCATCCTGGAGGATTTACTTCTAAGAAACC
AGAGTGA
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protein sequence of Gvermi12739.t1

>Gvermi12739.t1 ID=Gvermi12739.t1|Name=Gvermi12739.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=269bp
MCPLRVRKSKRSGRETGKVRDLIGRVKIWSHSSSCNGEASILLFDSLSQL
AAETGDLDMSEAQALLVLSQFLKDFALEECRAMGSSLNVDDGGVDRWPNA
VQFFLHQYATPNVIRSATQDLRGVNQKNCENETEFSLRMNIASLNCGKFY
GVDDTMRLYISGLRKSINSPLALHPKRHKCINFLELRSNMLYIESPENTG
VSSQTTAMTNHDAHEAFHYLEEPLRSISTTELLSTKGNKLVVMAKRGYRY
RREGMDPHPGGFTSKKPE*
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mRNA from alignment at ScGOVlb_425:1296206..1297107+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12739.t1 ID=Gvermi12739.t1|Name=Gvermi12739.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=902bp|location=Sequence derived from alignment at ScGOVlb_425:1296206..1297107+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCCCCTTACGTGTTCGTAAGTCCAAACGCTCTGGGCGTGAAACTGG
AAAGGTGAGGGATCTCATTGGTCGAGTAAAGATTTGGTCCCATAGCTCCA
GCTGCAACGGGGAGGCATCGATACTTTTGTTTGACTCTCTAAGTCAACTC
GCCGCTGAGACTGGTGACCTAGACATGAGCGAAGCTCAAGCACTGCTGGT
TTTATCCCAGTTCTTGAAGGATTTTGCCCTCGAAGAATGCCGAGCCATGG
GGAGCTCTTTGAACGTGGATGATGGAGGCGTCGATAGATGGCCAAACGCT
GTTCAGTTTTTTCTACATCAATATGCGACTCCCAATGTCATCAGAAGTGC
AACACAAGATCTCAGGGGAGTCAATCAGAAGAATTGTGAAAATGAAACTG
AGTTCAGTTTAAGGATGAATATTGCATCTCTTAATTGCGGAAAGTTTTAC
GGCGTGGATGATACGATGAGGCTTTACATCAGTGGATTGCGGAAGTCTAT
CAATTCTCCTCTTGCACTTCATCCGAAGAGACACAAATGTATCAATTTCC
TTGAACTTGTACGTTTTGCTCAGGCTGAGTAGGATGCAGTCAGAGCTCGT
AGTAAGTGGCCCAATCAAACTTGAAAGCTCATCTTGACGCTCTTTGTGCA
AAGCGGAGTAATATGCTGTACATTGAGTCTCCTGAGAATACCGGTGTTTC
TTCGCAGACCACTGCTATGACGAATCACGACGCTCATGAAGCCTTTCATT
ATCTAGAGGAGCCCCTTAGATCCATATCAACTACGGAACTACTTTCAACC
AAAGGGAACAAACTGGTGGTCATGGCAAAACGCGGATACCGTTACAGGAG
AGAAGGAATGGACCCGCATCCTGGAGGATTTACTTCTAAGAAACCAGAGT
GA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1296206..1297107+

>Gvermi12739.t1 ID=Gvermi12739.t1|Name=Gvermi12739.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=807bp|location=Sequence derived from alignment at ScGOVlb_425:1296206..1297107+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCCCCTTACGTGTTCGTAAGTCCAAACGCTCTGGGCGTGAAACTGG
AAAGGTGAGGGATCTCATTGGTCGAGTAAAGATTTGGTCCCATAGCTCCA
GCTGCAACGGGGAGGCATCGATACTTTTGTTTGACTCTCTAAGTCAACTC
GCCGCTGAGACTGGTGACCTAGACATGAGCGAAGCTCAAGCACTGCTGGT
TTTATCCCAGTTCTTGAAGGATTTTGCCCTCGAAGAATGCCGAGCCATGG
GGAGCTCTTTGAACGTGGATGATGGAGGCGTCGATAGATGGCCAAACGCT
GTTCAGTTTTTTCTACATCAATATGCGACTCCCAATGTCATCAGAAGTGC
AACACAAGATCTCAGGGGAGTCAATCAGAAGAATTGTGAAAATGAAACTG
AGTTCAGTTTAAGGATGAATATTGCATCTCTTAATTGCGGAAAGTTTTAC
GGCGTGGATGATACGATGAGGCTTTACATCAGTGGATTGCGGAAGTCTAT
CAATTCTCCTCTTGCACTTCATCCGAAGAGACACAAATGTATCAATTTCC
TTGAACTTCGGAGTAATATGCTGTACATTGAGTCTCCTGAGAATACCGGT
GTTTCTTCGCAGACCACTGCTATGACGAATCACGACGCTCATGAAGCCTT
TCATTATCTAGAGGAGCCCCTTAGATCCATATCAACTACGGAACTACTTT
CAACCAAAGGGAACAAACTGGTGGTCATGGCAAAACGCGGATACCGTTAC
AGGAGAGAAGGAATGGACCCGCATCCTGGAGGATTTACTTCTAAGAAACC
AGAGTGA
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