Gvermi12737.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12737.t1
Unique NameGvermi12737.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1285680..1287128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002668790.1
PFAMsDNA_alkylation
Max annot lvl2759|Eukaryota
Evalue5.7e-07
EggNOG OGsCOG4912@1|root,2S5QV@2759|Eukaryota
DescriptionDNA alkylation repair enzyme
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12737Gvermi12737Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1285680..1287128 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12737.t1.stop1Gvermi12737.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1285680..1285682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12737.t1.CDS1Gvermi12737.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1285680..1287128 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12737.t1.exon1Gvermi12737.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1285680..1287128 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12737.t1.start1Gvermi12737.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1287126..1287128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12737.t1Gvermi12737.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1285680..1287128 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12737.t1 ID=Gvermi12737.t1|Name=Gvermi12737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=483bp
MQPSASSAAQIVSSLQHILDQRSVRDSQVWSCERMHPVTMTRGVRMFGIR
FCVHTWYDQWRQPAPHITRDLKVSVAMQLFRSEYLEDKFSAIIFLSEILI
PERVIDTTHMPQFADLIDTACISGYEVCDKFSTLVLKQLLIDRRHEMMPL
IAEWMRCECAWRARSAIWALIPLARDAIYENLILEGCSIVLDKTDDCCKL
AVASALRALARTSPGSVYDFLHENHNLCRMSASGLSRACGDQHEWKAYFR
QRRKDLQKSRRGAQRRSPMVRRSESSASAAAVSAASSSEVGRSAVALPPG
ASVVGAPPPDLRTAGASERGWHGTGASTDGMASARTSTAGMYNAATAAGG
QAMSGIGAVDPIARRLPAAGVSTTCVTFDAPQMAVSHSPSAARNEIATES
DIPASAMTMTHVRAPERRVLPSFSELLRGQPPQRRAHSAEGFEHESGGEG
VTGARRYEEDVDSGDVGARLRGGTEDRTRSRR*
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spliced messenger RNA

>Gvermi12737.t1 ID=Gvermi12737.t1|Name=Gvermi12737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at ScGOVlb_425:1285680..1287128- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCTCCGCGTCAAGCGCCGCCCAAATCGTGTCTTCCTTGCAACA
CATTCTCGATCAGCGTTCAGTCAGGGACTCTCAAGTATGGAGTTGCGAGC
GCATGCATCCCGTCACCATGACGCGGGGCGTAAGAATGTTCGGCATCCGC
TTCTGCGTGCACACCTGGTATGACCAATGGAGGCAGCCCGCTCCGCACAT
CACCCGCGATCTCAAGGTCTCCGTCGCCATGCAGCTCTTCCGCTCCGAGT
ATCTCGAGGACAAATTTTCGGCCATCATCTTTCTCAGCGAGATTCTCATC
CCCGAGCGAGTGATCGACACCACACACATGCCGCAGTTCGCCGATCTTAT
CGACACCGCATGCATCTCTGGCTACGAGGTTTGCGACAAGTTCAGCACAC
TTGTGCTCAAGCAACTGCTCATCGACCGCCGCCACGAGATGATGCCCCTC
ATCGCCGAGTGGATGCGCTGCGAGTGCGCCTGGCGCGCCCGAAGCGCCAT
CTGGGCTCTCATCCCGCTGGCGCGCGACGCGATCTACGAGAACCTGATTC
TGGAGGGCTGCAGCATTGTTCTCGACAAAACGGACGACTGCTGCAAACTG
GCGGTGGCAAGCGCCCTCCGGGCGCTTGCTCGCACCTCGCCCGGCTCCGT
GTACGACTTTCTCCACGAGAACCACAACTTGTGCAGGATGTCTGCCAGCG
GTCTTTCACGCGCCTGCGGCGATCAACACGAGTGGAAGGCGTACTTTCGG
CAGAGGCGCAAGGATCTGCAGAAAAGCCGACGAGGCGCTCAAAGGCGCTC
TCCCATGGTCAGAAGATCGGAGAGTAGCGCTTCCGCAGCTGCTGTTTCGG
CCGCCAGCTCGTCGGAGGTGGGGCGATCGGCGGTTGCGCTGCCGCCCGGG
GCATCTGTCGTTGGCGCACCTCCACCTGATCTGCGTACGGCCGGCGCCTC
TGAACGGGGATGGCATGGCACTGGTGCTTCGACAGATGGAATGGCCAGCG
CTAGAACATCGACAGCTGGCATGTACAACGCCGCAACAGCTGCTGGTGGA
CAGGCGATGAGTGGCATCGGCGCAGTTGACCCCATCGCTCGAAGGCTGCC
CGCAGCGGGGGTATCGACAACATGTGTGACGTTTGACGCCCCTCAAATGG
CTGTTTCGCATTCGCCGTCAGCTGCGAGAAATGAAATAGCAACAGAGAGC
GATATTCCAGCGTCAGCAATGACGATGACTCACGTGAGAGCGCCAGAGAG
ACGTGTGCTGCCCTCGTTCTCCGAACTGTTGCGGGGACAACCTCCACAAA
GGAGAGCGCATAGCGCCGAGGGCTTTGAGCACGAATCGGGTGGGGAGGGC
GTGACTGGTGCGCGCCGTTACGAGGAAGATGTTGACAGCGGCGATGTCGG
AGCTCGGCTACGTGGTGGAACGGAAGACAGGACGAGATCGAGACGGTGA
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protein sequence of Gvermi12737.t1

>Gvermi12737.t1 ID=Gvermi12737.t1|Name=Gvermi12737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=483bp
MQPSASSAAQIVSSLQHILDQRSVRDSQVWSCERMHPVTMTRGVRMFGIR
FCVHTWYDQWRQPAPHITRDLKVSVAMQLFRSEYLEDKFSAIIFLSEILI
PERVIDTTHMPQFADLIDTACISGYEVCDKFSTLVLKQLLIDRRHEMMPL
IAEWMRCECAWRARSAIWALIPLARDAIYENLILEGCSIVLDKTDDCCKL
AVASALRALARTSPGSVYDFLHENHNLCRMSASGLSRACGDQHEWKAYFR
QRRKDLQKSRRGAQRRSPMVRRSESSASAAAVSAASSSEVGRSAVALPPG
ASVVGAPPPDLRTAGASERGWHGTGASTDGMASARTSTAGMYNAATAAGG
QAMSGIGAVDPIARRLPAAGVSTTCVTFDAPQMAVSHSPSAARNEIATES
DIPASAMTMTHVRAPERRVLPSFSELLRGQPPQRRAHSAEGFEHESGGEG
VTGARRYEEDVDSGDVGARLRGGTEDRTRSRR*
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mRNA from alignment at ScGOVlb_425:1285680..1287128-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12737.t1 ID=Gvermi12737.t1|Name=Gvermi12737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at ScGOVlb_425:1285680..1287128- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCCTCCGCGTCAAGCGCCGCCCAAATCGTGTCTTCCTTGCAACA
CATTCTCGATCAGCGTTCAGTCAGGGACTCTCAAGTATGGAGTTGCGAGC
GCATGCATCCCGTCACCATGACGCGGGGCGTAAGAATGTTCGGCATCCGC
TTCTGCGTGCACACCTGGTATGACCAATGGAGGCAGCCCGCTCCGCACAT
CACCCGCGATCTCAAGGTCTCCGTCGCCATGCAGCTCTTCCGCTCCGAGT
ATCTCGAGGACAAATTTTCGGCCATCATCTTTCTCAGCGAGATTCTCATC
CCCGAGCGAGTGATCGACACCACACACATGCCGCAGTTCGCCGATCTTAT
CGACACCGCATGCATCTCTGGCTACGAGGTTTGCGACAAGTTCAGCACAC
TTGTGCTCAAGCAACTGCTCATCGACCGCCGCCACGAGATGATGCCCCTC
ATCGCCGAGTGGATGCGCTGCGAGTGCGCCTGGCGCGCCCGAAGCGCCAT
CTGGGCTCTCATCCCGCTGGCGCGCGACGCGATCTACGAGAACCTGATTC
TGGAGGGCTGCAGCATTGTTCTCGACAAAACGGACGACTGCTGCAAACTG
GCGGTGGCAAGCGCCCTCCGGGCGCTTGCTCGCACCTCGCCCGGCTCCGT
GTACGACTTTCTCCACGAGAACCACAACTTGTGCAGGATGTCTGCCAGCG
GTCTTTCACGCGCCTGCGGCGATCAACACGAGTGGAAGGCGTACTTTCGG
CAGAGGCGCAAGGATCTGCAGAAAAGCCGACGAGGCGCTCAAAGGCGCTC
TCCCATGGTCAGAAGATCGGAGAGTAGCGCTTCCGCAGCTGCTGTTTCGG
CCGCCAGCTCGTCGGAGGTGGGGCGATCGGCGGTTGCGCTGCCGCCCGGG
GCATCTGTCGTTGGCGCACCTCCACCTGATCTGCGTACGGCCGGCGCCTC
TGAACGGGGATGGCATGGCACTGGTGCTTCGACAGATGGAATGGCCAGCG
CTAGAACATCGACAGCTGGCATGTACAACGCCGCAACAGCTGCTGGTGGA
CAGGCGATGAGTGGCATCGGCGCAGTTGACCCCATCGCTCGAAGGCTGCC
CGCAGCGGGGGTATCGACAACATGTGTGACGTTTGACGCCCCTCAAATGG
CTGTTTCGCATTCGCCGTCAGCTGCGAGAAATGAAATAGCAACAGAGAGC
GATATTCCAGCGTCAGCAATGACGATGACTCACGTGAGAGCGCCAGAGAG
ACGTGTGCTGCCCTCGTTCTCCGAACTGTTGCGGGGACAACCTCCACAAA
GGAGAGCGCATAGCGCCGAGGGCTTTGAGCACGAATCGGGTGGGGAGGGC
GTGACTGGTGCGCGCCGTTACGAGGAAGATGTTGACAGCGGCGATGTCGG
AGCTCGGCTACGTGGTGGAACGGAAGACAGGACGAGATCGAGACGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1285680..1287128-

>Gvermi12737.t1 ID=Gvermi12737.t1|Name=Gvermi12737.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1449bp|location=Sequence derived from alignment at ScGOVlb_425:1285680..1287128- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCCTCCGCGTCAAGCGCCGCCCAAATCGTGTCTTCCTTGCAACA
CATTCTCGATCAGCGTTCAGTCAGGGACTCTCAAGTATGGAGTTGCGAGC
GCATGCATCCCGTCACCATGACGCGGGGCGTAAGAATGTTCGGCATCCGC
TTCTGCGTGCACACCTGGTATGACCAATGGAGGCAGCCCGCTCCGCACAT
CACCCGCGATCTCAAGGTCTCCGTCGCCATGCAGCTCTTCCGCTCCGAGT
ATCTCGAGGACAAATTTTCGGCCATCATCTTTCTCAGCGAGATTCTCATC
CCCGAGCGAGTGATCGACACCACACACATGCCGCAGTTCGCCGATCTTAT
CGACACCGCATGCATCTCTGGCTACGAGGTTTGCGACAAGTTCAGCACAC
TTGTGCTCAAGCAACTGCTCATCGACCGCCGCCACGAGATGATGCCCCTC
ATCGCCGAGTGGATGCGCTGCGAGTGCGCCTGGCGCGCCCGAAGCGCCAT
CTGGGCTCTCATCCCGCTGGCGCGCGACGCGATCTACGAGAACCTGATTC
TGGAGGGCTGCAGCATTGTTCTCGACAAAACGGACGACTGCTGCAAACTG
GCGGTGGCAAGCGCCCTCCGGGCGCTTGCTCGCACCTCGCCCGGCTCCGT
GTACGACTTTCTCCACGAGAACCACAACTTGTGCAGGATGTCTGCCAGCG
GTCTTTCACGCGCCTGCGGCGATCAACACGAGTGGAAGGCGTACTTTCGG
CAGAGGCGCAAGGATCTGCAGAAAAGCCGACGAGGCGCTCAAAGGCGCTC
TCCCATGGTCAGAAGATCGGAGAGTAGCGCTTCCGCAGCTGCTGTTTCGG
CCGCCAGCTCGTCGGAGGTGGGGCGATCGGCGGTTGCGCTGCCGCCCGGG
GCATCTGTCGTTGGCGCACCTCCACCTGATCTGCGTACGGCCGGCGCCTC
TGAACGGGGATGGCATGGCACTGGTGCTTCGACAGATGGAATGGCCAGCG
CTAGAACATCGACAGCTGGCATGTACAACGCCGCAACAGCTGCTGGTGGA
CAGGCGATGAGTGGCATCGGCGCAGTTGACCCCATCGCTCGAAGGCTGCC
CGCAGCGGGGGTATCGACAACATGTGTGACGTTTGACGCCCCTCAAATGG
CTGTTTCGCATTCGCCGTCAGCTGCGAGAAATGAAATAGCAACAGAGAGC
GATATTCCAGCGTCAGCAATGACGATGACTCACGTGAGAGCGCCAGAGAG
ACGTGTGCTGCCCTCGTTCTCCGAACTGTTGCGGGGACAACCTCCACAAA
GGAGAGCGCATAGCGCCGAGGGCTTTGAGCACGAATCGGGTGGGGAGGGC
GTGACTGGTGCGCGCCGTTACGAGGAAGATGTTGACAGCGGCGATGTCGG
AGCTCGGCTACGTGGTGGAACGGAAGACAGGACGAGATCGAGACGGTGA
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