Gvermi12732.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12732.t1
Unique NameGvermi12732.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length514
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1259812..1261353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12732Gvermi12732Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1259812..1261353 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12732.t1.stop1Gvermi12732.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1259812..1259814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12732.t1.CDS1Gvermi12732.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1259812..1261353 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12732.t1.exon1Gvermi12732.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1259812..1261353 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12732.t1.start1Gvermi12732.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1261351..1261353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12732.t1Gvermi12732.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1259812..1261353 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12732.t1 ID=Gvermi12732.t1|Name=Gvermi12732.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=514bp
MAIIAVDSRYVNALIYVVVDVAVFAILVMTLTSIQAWSIRRRLLNGERIS
LREHRISPLTGGVIEDGNRLSKLLVFVHFLLLALLFVFALGINGQTTKAK
RPANRQYISKLDPLTARVLFDNSMHPQIISSCTEFSNEILTYYPIAFDKQ
NMSSAPVSELNLAESPYDEIGTAVDSASVLCQAHDRAKPLLKVSKCGTDW
KSCCNLRISRPTRISLMTGKGSPKVWQRNEVHRNYSSLIMTRNVRPVSYD
MSATVYDRLICLDLYRFSSPESARMNCMLGTWTAGGTSFTFLLGKATFAQ
TKREQVMNTNKRTEVSFEAFSEEATIEWDAEAEIILSNGLHSISDNMVPV
RLFLDTFVSRSSVPVNVTNEVIYEEFDMDVTDVKTFAIVGYSILIVLAIL
MLLFLLVNLSKSSVKEKDGPVIPDITSYGGLLKLLQDEETRKHDRHPKRP
KVQFGITSAGTIFSIGPVSDNMKTARLPTDGLLRWHRSSTDLTDLTKNTN
DDETLSNCSDMQQ*
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spliced messenger RNA

>Gvermi12732.t1 ID=Gvermi12732.t1|Name=Gvermi12732.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at ScGOVlb_425:1259812..1261353- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATCATTGCTGTTGATTCCCGATATGTGAATGCCCTGATTTACGT
GGTTGTCGACGTTGCCGTCTTCGCCATTTTGGTGATGACACTCACCTCAA
TTCAGGCATGGAGCATCAGAAGGCGTCTTCTCAACGGAGAGCGAATATCT
CTGCGTGAGCATCGTATTTCGCCGCTCACAGGCGGAGTGATAGAGGATGG
CAATCGCTTATCAAAACTTCTTGTCTTTGTCCACTTTTTGCTGCTTGCGT
TGTTGTTTGTGTTTGCTCTAGGTATCAATGGGCAAACGACCAAAGCGAAG
CGCCCTGCCAATCGCCAGTATATTTCTAAACTGGATCCTCTCACAGCCCG
AGTCCTGTTTGATAACAGCATGCACCCGCAAATCATTTCCAGTTGCACTG
AATTCTCGAATGAAATCCTAACCTATTACCCTATCGCCTTCGACAAACAA
AACATGAGTTCCGCACCAGTTTCCGAGCTAAACTTGGCAGAGAGTCCCTA
TGATGAGATAGGAACAGCCGTGGACTCCGCAAGTGTGCTATGTCAGGCAC
ATGACCGTGCCAAGCCACTTCTCAAGGTATCAAAATGCGGAACAGATTGG
AAGTCTTGTTGTAACTTGAGGATTTCTCGCCCCACTCGTATCTCGCTGAT
GACGGGAAAAGGCTCTCCAAAAGTCTGGCAGAGAAATGAAGTACATCGCA
ATTATTCATCATTGATCATGACGAGAAACGTGCGACCAGTGTCTTACGAC
ATGTCTGCCACCGTATATGATAGATTGATCTGCCTAGACTTGTACAGGTT
TAGCTCTCCGGAAAGTGCGCGAATGAATTGCATGCTGGGAACATGGACCG
CAGGCGGGACCAGTTTCACTTTTCTACTCGGGAAGGCAACGTTTGCGCAA
ACAAAACGAGAGCAGGTTATGAACACGAACAAAAGAACAGAGGTATCGTT
TGAAGCGTTCAGCGAGGAGGCAACTATTGAATGGGATGCGGAGGCCGAGA
TTATTTTAAGCAACGGGCTCCATTCAATTAGTGATAACATGGTCCCCGTT
CGATTATTTTTGGACACATTTGTGAGTCGCTCCTCAGTGCCGGTAAACGT
CACCAACGAAGTCATCTACGAGGAGTTCGACATGGATGTGACAGACGTGA
AAACCTTTGCAATAGTTGGATACTCTATTCTTATCGTGCTCGCGATATTA
ATGCTTCTGTTTTTGCTTGTGAATCTCTCGAAAAGTTCTGTCAAAGAGAA
AGATGGTCCTGTGATTCCGGACATCACGTCGTACGGAGGATTGTTGAAGC
TGTTGCAAGACGAAGAAACTCGTAAGCATGATAGACACCCAAAACGCCCA
AAAGTACAATTTGGAATCACTTCCGCGGGAACAATATTTAGCATAGGCCC
CGTTTCAGACAACATGAAGACTGCGCGACTGCCAACAGATGGCCTTTTAA
GATGGCATCGAAGCTCTACAGATCTCACAGATCTCACGAAAAACACAAAC
GACGACGAGACACTTTCCAATTGCTCTGATATGCAACAGTGA
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protein sequence of Gvermi12732.t1

>Gvermi12732.t1 ID=Gvermi12732.t1|Name=Gvermi12732.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=514bp
MAIIAVDSRYVNALIYVVVDVAVFAILVMTLTSIQAWSIRRRLLNGERIS
LREHRISPLTGGVIEDGNRLSKLLVFVHFLLLALLFVFALGINGQTTKAK
RPANRQYISKLDPLTARVLFDNSMHPQIISSCTEFSNEILTYYPIAFDKQ
NMSSAPVSELNLAESPYDEIGTAVDSASVLCQAHDRAKPLLKVSKCGTDW
KSCCNLRISRPTRISLMTGKGSPKVWQRNEVHRNYSSLIMTRNVRPVSYD
MSATVYDRLICLDLYRFSSPESARMNCMLGTWTAGGTSFTFLLGKATFAQ
TKREQVMNTNKRTEVSFEAFSEEATIEWDAEAEIILSNGLHSISDNMVPV
RLFLDTFVSRSSVPVNVTNEVIYEEFDMDVTDVKTFAIVGYSILIVLAIL
MLLFLLVNLSKSSVKEKDGPVIPDITSYGGLLKLLQDEETRKHDRHPKRP
KVQFGITSAGTIFSIGPVSDNMKTARLPTDGLLRWHRSSTDLTDLTKNTN
DDETLSNCSDMQQ*
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mRNA from alignment at ScGOVlb_425:1259812..1261353-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12732.t1 ID=Gvermi12732.t1|Name=Gvermi12732.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at ScGOVlb_425:1259812..1261353- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCATCATTGCTGTTGATTCCCGATATGTGAATGCCCTGATTTACGT
GGTTGTCGACGTTGCCGTCTTCGCCATTTTGGTGATGACACTCACCTCAA
TTCAGGCATGGAGCATCAGAAGGCGTCTTCTCAACGGAGAGCGAATATCT
CTGCGTGAGCATCGTATTTCGCCGCTCACAGGCGGAGTGATAGAGGATGG
CAATCGCTTATCAAAACTTCTTGTCTTTGTCCACTTTTTGCTGCTTGCGT
TGTTGTTTGTGTTTGCTCTAGGTATCAATGGGCAAACGACCAAAGCGAAG
CGCCCTGCCAATCGCCAGTATATTTCTAAACTGGATCCTCTCACAGCCCG
AGTCCTGTTTGATAACAGCATGCACCCGCAAATCATTTCCAGTTGCACTG
AATTCTCGAATGAAATCCTAACCTATTACCCTATCGCCTTCGACAAACAA
AACATGAGTTCCGCACCAGTTTCCGAGCTAAACTTGGCAGAGAGTCCCTA
TGATGAGATAGGAACAGCCGTGGACTCCGCAAGTGTGCTATGTCAGGCAC
ATGACCGTGCCAAGCCACTTCTCAAGGTATCAAAATGCGGAACAGATTGG
AAGTCTTGTTGTAACTTGAGGATTTCTCGCCCCACTCGTATCTCGCTGAT
GACGGGAAAAGGCTCTCCAAAAGTCTGGCAGAGAAATGAAGTACATCGCA
ATTATTCATCATTGATCATGACGAGAAACGTGCGACCAGTGTCTTACGAC
ATGTCTGCCACCGTATATGATAGATTGATCTGCCTAGACTTGTACAGGTT
TAGCTCTCCGGAAAGTGCGCGAATGAATTGCATGCTGGGAACATGGACCG
CAGGCGGGACCAGTTTCACTTTTCTACTCGGGAAGGCAACGTTTGCGCAA
ACAAAACGAGAGCAGGTTATGAACACGAACAAAAGAACAGAGGTATCGTT
TGAAGCGTTCAGCGAGGAGGCAACTATTGAATGGGATGCGGAGGCCGAGA
TTATTTTAAGCAACGGGCTCCATTCAATTAGTGATAACATGGTCCCCGTT
CGATTATTTTTGGACACATTTGTGAGTCGCTCCTCAGTGCCGGTAAACGT
CACCAACGAAGTCATCTACGAGGAGTTCGACATGGATGTGACAGACGTGA
AAACCTTTGCAATAGTTGGATACTCTATTCTTATCGTGCTCGCGATATTA
ATGCTTCTGTTTTTGCTTGTGAATCTCTCGAAAAGTTCTGTCAAAGAGAA
AGATGGTCCTGTGATTCCGGACATCACGTCGTACGGAGGATTGTTGAAGC
TGTTGCAAGACGAAGAAACTCGTAAGCATGATAGACACCCAAAACGCCCA
AAAGTACAATTTGGAATCACTTCCGCGGGAACAATATTTAGCATAGGCCC
CGTTTCAGACAACATGAAGACTGCGCGACTGCCAACAGATGGCCTTTTAA
GATGGCATCGAAGCTCTACAGATCTCACAGATCTCACGAAAAACACAAAC
GACGACGAGACACTTTCCAATTGCTCTGATATGCAACAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1259812..1261353-

>Gvermi12732.t1 ID=Gvermi12732.t1|Name=Gvermi12732.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1542bp|location=Sequence derived from alignment at ScGOVlb_425:1259812..1261353- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCATCATTGCTGTTGATTCCCGATATGTGAATGCCCTGATTTACGT
GGTTGTCGACGTTGCCGTCTTCGCCATTTTGGTGATGACACTCACCTCAA
TTCAGGCATGGAGCATCAGAAGGCGTCTTCTCAACGGAGAGCGAATATCT
CTGCGTGAGCATCGTATTTCGCCGCTCACAGGCGGAGTGATAGAGGATGG
CAATCGCTTATCAAAACTTCTTGTCTTTGTCCACTTTTTGCTGCTTGCGT
TGTTGTTTGTGTTTGCTCTAGGTATCAATGGGCAAACGACCAAAGCGAAG
CGCCCTGCCAATCGCCAGTATATTTCTAAACTGGATCCTCTCACAGCCCG
AGTCCTGTTTGATAACAGCATGCACCCGCAAATCATTTCCAGTTGCACTG
AATTCTCGAATGAAATCCTAACCTATTACCCTATCGCCTTCGACAAACAA
AACATGAGTTCCGCACCAGTTTCCGAGCTAAACTTGGCAGAGAGTCCCTA
TGATGAGATAGGAACAGCCGTGGACTCCGCAAGTGTGCTATGTCAGGCAC
ATGACCGTGCCAAGCCACTTCTCAAGGTATCAAAATGCGGAACAGATTGG
AAGTCTTGTTGTAACTTGAGGATTTCTCGCCCCACTCGTATCTCGCTGAT
GACGGGAAAAGGCTCTCCAAAAGTCTGGCAGAGAAATGAAGTACATCGCA
ATTATTCATCATTGATCATGACGAGAAACGTGCGACCAGTGTCTTACGAC
ATGTCTGCCACCGTATATGATAGATTGATCTGCCTAGACTTGTACAGGTT
TAGCTCTCCGGAAAGTGCGCGAATGAATTGCATGCTGGGAACATGGACCG
CAGGCGGGACCAGTTTCACTTTTCTACTCGGGAAGGCAACGTTTGCGCAA
ACAAAACGAGAGCAGGTTATGAACACGAACAAAAGAACAGAGGTATCGTT
TGAAGCGTTCAGCGAGGAGGCAACTATTGAATGGGATGCGGAGGCCGAGA
TTATTTTAAGCAACGGGCTCCATTCAATTAGTGATAACATGGTCCCCGTT
CGATTATTTTTGGACACATTTGTGAGTCGCTCCTCAGTGCCGGTAAACGT
CACCAACGAAGTCATCTACGAGGAGTTCGACATGGATGTGACAGACGTGA
AAACCTTTGCAATAGTTGGATACTCTATTCTTATCGTGCTCGCGATATTA
ATGCTTCTGTTTTTGCTTGTGAATCTCTCGAAAAGTTCTGTCAAAGAGAA
AGATGGTCCTGTGATTCCGGACATCACGTCGTACGGAGGATTGTTGAAGC
TGTTGCAAGACGAAGAAACTCGTAAGCATGATAGACACCCAAAACGCCCA
AAAGTACAATTTGGAATCACTTCCGCGGGAACAATATTTAGCATAGGCCC
CGTTTCAGACAACATGAAGACTGCGCGACTGCCAACAGATGGCCTTTTAA
GATGGCATCGAAGCTCTACAGATCTCACAGATCTCACGAAAAACACAAAC
GACGACGAGACACTTTCCAATTGCTCTGATATGCAACAGTGA
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