Gvermi12731.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12731.t1
Unique NameGvermi12731.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length65
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1254147..1259527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12731Gvermi12731Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1254147..1259527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12731.t1Gvermi12731.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1254147..1259527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12731.t1.CDS1Gvermi12731.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1254147..1254218 +
Gvermi12731.t1.CDS2Gvermi12731.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1259291..1259343 +
Gvermi12731.t1.CDS3Gvermi12731.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1259458..1259527 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12731.t1.exon1Gvermi12731.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1254147..1254218 +
Gvermi12731.t1.exon2Gvermi12731.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1259291..1259343 +
Gvermi12731.t1.exon3Gvermi12731.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1259458..1259527 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12731.t1.intron1Gvermi12731.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1254219..1259290 +
Gvermi12731.t1.intron2Gvermi12731.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1259344..1259457 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12731.t1.stop1Gvermi12731.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1259525..1259527 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12731.t1 ID=Gvermi12731.t1|Name=Gvermi12731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=65bp
TSSKIENDIFTKFNRVLFKLSRKKWNLNSQHIRDPTSSNEDLLTRNTKHS
DGIFAETLQAACVS*
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spliced messenger RNA

>Gvermi12731.t1 ID=Gvermi12731.t1|Name=Gvermi12731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=195bp|location=Sequence derived from alignment at ScGOVlb_425:1254147..1259527+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ACATCTTCGAAAATTGAAAATGACATTTTCACCAAATTTAACAGAGTGTT
ATTCAAACTATCACGCAAAAAGTGGAATCTGAACTCACAGCATATTCGAG
ATCCGACCTCCTCTAATGAAGATTTGTTGACCCGTAACACCAAACATTCC
GACGGAATATTTGCAGAGACGCTTCAAGCGGCTTGTGTTTCGTAA
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protein sequence of Gvermi12731.t1

>Gvermi12731.t1 ID=Gvermi12731.t1|Name=Gvermi12731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=65bp
TSSKIENDIFTKFNRVLFKLSRKKWNLNSQHIRDPTSSNEDLLTRNTKHS
DGIFAETLQAACVS*
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mRNA from alignment at ScGOVlb_425:1254147..1259527+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12731.t1 ID=Gvermi12731.t1|Name=Gvermi12731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=5381bp|location=Sequence derived from alignment at ScGOVlb_425:1254147..1259527+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ACATCTTCGAAAATTGAAAATGACATTTTCACCAAATTTAACAGAGTGTT
ATTCAAACTATCACGCAAAAAGGTAAGCAAAGTTTAGGTTTATTAGTTTT
TATGAGACAAAAAGTGAAACTCTCTTAAATAGTATTAAAATGATTTATAG
TTTCGTTACAACGCGCCGGAGATTTTATGGGCTAAGCATTTCTTATGAAA
TTCAGGACGTTTTTAGTTTTGCATTGCTTTTACCAAGTTTAATTTTTCTT
CTTAATGAACTAGCTCAGTATCGGGGTACGTAATGGGTTTTTAAACAAAA
GCTGAGAATTGTTGCAAAAAAAAAAATTCATCAAAGACCTGTAAAAAGAG
ATTCCTGTTCCATGTTTTAGAAAGTTACAGTACAAGTATCGCATTTTATC
TCAAATTAAGTCACCAGGTGATTTGTAATTAAAGATGATGGATACACAAT
TATGGACAGTCAAGAATtactgggcgtttcaagagtataaaaaaaatcac
aaagcttgtcaaaatgagcaactttgcaaacaatagccgtccttttccct
aaaacagttaccattcgcgtttcaaaaagatagggcatttcgaactagtg
cgtgatcatttacgcagcatatggtttcttttcctcaaaacgacatagga
tattctaaagtaaaagcttctaacacgatactttaaacagaaacttagat
ctagacagttattctcattatcatatcgctctcttaaatattcactgaaa
tataatcaaacggttttgttaacagccaaataatgctcagctgctataat
aagtataattttttgacagaaatgtaaggtatcatggtagtttatttcgc
actcaaaactccgtttaatgaacaagttctttaaacaagaaaaagaatag
taaggaaaaatgcttataaatttttttgatttattgaactgaaaaacttt
tcttacggaagcttgaaagtaatgaaacaagatgctgtattgtgcgatga
gcactgaaaaaaaagatagttgcgaaatgaatgtgatttaaaatgaagtg
aaattttgattcatataaaccacagtgttttacatatagccatattattt
aaaaaaatagcaaacagaatttgaacacaatgaatttctatatgggctta
tattatgcgatggaccggactttcgatgaaaagaagtacatacaaagcct
tttcagtaaccgttacaaactagataaggcttacaaatgatttcacgcaa
cgtttcataaaattttgtgtagtgtagaccgcggttaatgcgcatgaaac
gcatgtcagatagatagcgaggtcaagtggcaggacttgagacacgatgc
gtacgtggcgcacgtgtacgtcgtttgccttgctcacccaccgtagggtg
ccgcggcctatttatggtcgtgagtcatacccgccggcgtaaaagttgcg
ggcatgcctctctctttcccgcccacccaacccgaggctttgccccgatg
tctctctctttggagggttcaactcggcatttactgtagctgtactggac
ttctctggttattgtacacgtgtttgacgaagggatgaccagtcccgctg
agaaccctaccggaggaagggaaggggaggaaaagatgggtcggagcgaa
atttcccccccgcattttatagacacagttggtgccttcaagtggggagg
aacgcgcggcaattcgtcaatttcttttagttgcgtcgagttcgaatcta
tccaggggtacgtaaccaacgaatttctacggcggtttacgttgctggaa
gcagccccgggtcagatttacagtaaaggaatgcgtttcgtatatctaat
caggagtgcaaaatgctttttcaccaaagaagcgcggcagtttagtagac
tcccaaataaacttcctttcctaattataaggtattgtcacgtagatact
ttcgtttttagttcacttgttctcatatgaaaatgaataagatgtactca
ttagaatggtttgtggccaaagcagaccattttgaacaggttttgattaa
aatggagtataagaaatggcgcaaaactgtgaactttaattgtggagagt
gtacgatacgcgatgaagaagccttgaattaatattatttatttcacaaa
agatgaaatcaactactgtagaaggctaataaaagtttgagagtgaaatg
ccctctgattttaaaacgattttttatcttgaagtgttttgaaaattgat
ttttgtaaccttacactagtaaaaacaatgactcgcatcaaaatgccagg
tgttttatacgtttgaaatagacttACATTCGAATGATGTAAATATTCAG
ACATCAAGTTTTTCTAATAGTTTTCGAGTGCCTAGATTTCAGAAAATTTA
AAAATGTCAGATAATGCTGTTTTAGATGCAACATGCTCATTTGGGCATTC
ACAATCAGCTGCAGAAAAAACCATTGGCAGTAAAAATGATATTTTGTATC
GCAAGTTAGTCCTTGTATTTTGAGTGTAGAGCCATATCTTACATTCTGAA
GCAGATAAATCCGCCATTAAAAAAAACGCGTATTCGAAATTATCCGAAAG
TATGGTAGACTAAAACTTTTGAATATTTTTTTTCATGGATTAAAAAATAT
ATCTTTCAGGCCGGAATGTTTTATTTTTGTTTAACGATTTGTACATTTTT
GGATTTCCAAAGTGGCTATAGCATTCTAAACGTGCTTTCTCATTATTTCA
GAACTCTTTTTGCATCTCATATAagacctcattcgtatatagtttccaag
tacacaaatatttcattttctctgatgaaataaaattataccgcccgtcc
tacaatgtttgcattcaaaacaatttctttccttagtatatttgatgttt
cggggaactctctacaacacagcaaaaaatcaacttttcttaatataaac
ccgtagggaagcaaaaattatagaaaacctgtaaagatacgacttctttg
caataacttggtttttgcatgtaaaaacgatctttttattacTATTAATC
GTTAAATACAAACTATATCCTCAACATCATCAACAGGTTTAGCACACATC
CTAAAAAAGCTGATGCCGCTCTTGAACAAGtacagtctgtctcaaaatca
tatcactttggtgttgaagtatagaatttgtgattttggtactgtatgcc
tacaggatctagattaaaaaacaattcaaatccaaaaaccgtttcaaaat
tgtaacagctttattaagttaaagtctctttaagaaactcagtaattaat
ttttccacctttatgctgaacaacgcaaatacagcgtttgggcatcgaaa
tgatggagccattaactgttaatataaaagtactgtcccaacaattataa
ataccgtttttaaaaccaaaaactgttctaaattgccttccaaagccata
aaccattattgataatagattacattcattttaatgaggtttacgtctag
tgagcgtgctagccaataagtatataacggtagtagttgcttcttatagc
caatctgaccccactttagatttgtgtattgcttatttgtcttgctgtaa
atcaaaacttttcgtgtgcacattatctgcaaggtagttgtaggttacaa
ataacatcttcatagcatgcagagtatatatgtgtatgaataaatgcaat
atctggtagcaaatttctgatctggcaacccacatcattacagaaccgcc
tccagagtttgttctctaaaatttaatgcgattctttcttagatcatgtc
agtaaaatttataaccattttgtaccatcaaaaaaacattttttttgtca
gaaaaaacacctgtgtttcattgattttttaagtatgccatctatacata
gcagtatattgaattttgcctatggttatcttctaaagggaatgttctca
taatttttttaatactggaacagttgtttttagtgatttcatgtcaaact
gttggtttagaaacattaaggtttaagttttttgcaatttttttgcatga
gactcttcttcaacacagcttttgttttcaaccgcgtgtatctgcagtaa
ttaaaaggtgtgaacgccctgtagatgtttttgttctacacgttgcttga
ttttaaagggggcggaaaattgtgactggatgacggtttaaaagtcggct
aattttaacatataattatctattggcttttagttgtataattgcgagct
gttcggagcgcaaaagaggtgaactttgagccataacgatggatgttgat
gatgtagtgttattattatgaaacggcttttacttacatgttctgcaaaa
ggcgcagtacagtactactttggcccgttttttaggcgtgatatgatttt
gaaacgcactgtaTCACATTTTGCATTCTGCTGTTAACTTCATTAACACA
CACAGGAAAATGGAATTTTCTTAAAAATATTTTCAACGTGTTGAGCTCTT
CATTCGAATGACTAATAATTTAATTTATCACCTGCACAGCTGTTGAATTG
TTTAATCATGGCGTCGATGAAAATCATGATAGTTTTCCGATGAAAAAAAg
gttaagaaccaaagaggataaccattttgattactgtcggtatgtaactg
atgtaatttttcagcagtccttttgcctatctggaaacatagaagaagga
aaaaaaatagttctgcggcaagcataaattatatgaatttaaaaacggaa
gtttccttttggccaaaaatggtcttgcaataataatttccaatcatgca
cttggatctaatgcagatattgacatttattattcaaatatttcggatca
taaaaccgcactggagaagcgcgcaaatgaaaatgcaagttttattttgg
acgcaggagatcttttggacaaatTTCATTCAAGTGCAGCGACATCGTTC
TCTACCGGCATTTTCCTGAATGGACGTCATGGATGATAACTTGGCGCATC
TCGGACGGCGGCGATATTCACTTTCTTTACATTGAGTCTGCAGGCACGAA
GGTTGGTCAACGTTTGCGTCGCTTCGCCCATCCTTCGTGCACTTTGCGCT
CTGGATGTTTCCTGGCCTCATGCATCATTGTCAAGTACGCATAGTGGAAT
CTGAACTCACAGCATATTCGAGATCCGACCTCCTCTAATGAAGATTTGTA
AGTATCCATTTCAAGCATAGTGTACCATTATGCTTGAGGTTATGTCTTCA
CAGCGATCATCAATTGATTTATCTCACCACCACAGAGGATGCATATCCCT
TCAAACTTCAGGTTGACCCGTAACACCAAACATTCCGACGGAATATTTGC
AGAGACGCTTCAAGCGGCTTGTGTTTCGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1254147..1259527+

>Gvermi12731.t1 ID=Gvermi12731.t1|Name=Gvermi12731.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=195bp|location=Sequence derived from alignment at ScGOVlb_425:1254147..1259527+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ACATCTTCGAAAATTGAAAATGACATTTTCACCAAATTTAACAGAGTGTT
ATTCAAACTATCACGCAAAAAGTGGAATCTGAACTCACAGCATATTCGAG
ATCCGACCTCCTCTAATGAAGATTTGTTGACCCGTAACACCAAACATTCC
GACGGAATATTTGCAGAGACGCTTCAAGCGGCTTGTGTTTCGTAA
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