Gvermi12729.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12729.t1
Unique NameGvermi12729.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length217
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1236858..1237508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3694.POPTR_0012s11610.1
PFAMsCyclin
Max annot lvl35493|Streptophyta
Evalue7.14e-24
EggNOG OGsKOG1674@1|root,KOG1674@2759|Eukaryota,37T29@33090|Viridiplantae,3GHQU@35493|Streptophyta,4JRPY@91835|fabids
DescriptionCyclin
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12729Gvermi12729Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1236858..1237508 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12729.t1.stop1Gvermi12729.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1236858..1236860 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12729.t1.CDS1Gvermi12729.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1236858..1237508 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12729.t1.exon1Gvermi12729.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1236858..1237508 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12729.t1.start1Gvermi12729.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1237506..1237508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12729.t1Gvermi12729.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1236858..1237508 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12729.t1 ID=Gvermi12729.t1|Name=Gvermi12729.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=217bp
MDTTNPQILSPQTRTPALGDSDVLFLAALSTALELRVNLDPFAFPSTCEP
LSVFFCVEEPDISTYDYLERLFRFASCSKSAFVLMLIYIDRFLVSGAAPF
NPFSMHRIIISALVVAIKSTEDVVSTSSHYARVGGAASAAEMNTLEIVFF
ECIEFEGFVSPTLYGTYHAQLELFVPLVCIPRTPTNMQYLRGLARFSEKG
SMQLDGLRCHRSARNP*
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spliced messenger RNA

>Gvermi12729.t1 ID=Gvermi12729.t1|Name=Gvermi12729.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=651bp|location=Sequence derived from alignment at ScGOVlb_425:1236858..1237508- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATACCACCAATCCCCAAATCCTCTCCCCCCAAACAAGGACTCCAGC
TTTGGGGGACAGTGACGTTCTCTTCCTCGCCGCATTGAGCACAGCTCTTG
AACTTCGGGTGAATTTGGATCCCTTTGCATTTCCCTCCACATGTGAGCCC
CTTTCCGTCTTTTTCTGTGTGGAAGAGCCAGACATATCAACGTATGACTA
TCTTGAACGCCTTTTCAGATTTGCTTCTTGTTCGAAGTCCGCCTTTGTTC
TCATGCTCATCTACATCGATCGATTCCTTGTCTCCGGTGCTGCTCCCTTC
AACCCGTTTTCCATGCACAGAATAATTATTTCTGCACTTGTTGTTGCCAT
TAAGAGTACTGAAGATGTTGTAAGCACGTCTTCGCACTATGCTAGAGTGG
GTGGCGCTGCCTCTGCGGCTGAAATGAATACCCTTGAAATAGTCTTCTTT
GAGTGCATTGAATTTGAAGGCTTTGTTAGTCCAACACTCTACGGAACGTA
CCATGCCCAGTTGGAGTTGTTTGTTCCACTAGTCTGCATTCCTCGTACTC
CCACTAATATGCAGTATCTCAGAGGTTTGGCCCGTTTCAGTGAGAAAGGA
AGTATGCAACTCGATGGATTACGATGTCACCGATCGGCGCGCAACCCATA
G
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protein sequence of Gvermi12729.t1

>Gvermi12729.t1 ID=Gvermi12729.t1|Name=Gvermi12729.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=217bp
MDTTNPQILSPQTRTPALGDSDVLFLAALSTALELRVNLDPFAFPSTCEP
LSVFFCVEEPDISTYDYLERLFRFASCSKSAFVLMLIYIDRFLVSGAAPF
NPFSMHRIIISALVVAIKSTEDVVSTSSHYARVGGAASAAEMNTLEIVFF
ECIEFEGFVSPTLYGTYHAQLELFVPLVCIPRTPTNMQYLRGLARFSEKG
SMQLDGLRCHRSARNP*
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mRNA from alignment at ScGOVlb_425:1236858..1237508-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12729.t1 ID=Gvermi12729.t1|Name=Gvermi12729.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=651bp|location=Sequence derived from alignment at ScGOVlb_425:1236858..1237508- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATACCACCAATCCCCAAATCCTCTCCCCCCAAACAAGGACTCCAGC
TTTGGGGGACAGTGACGTTCTCTTCCTCGCCGCATTGAGCACAGCTCTTG
AACTTCGGGTGAATTTGGATCCCTTTGCATTTCCCTCCACATGTGAGCCC
CTTTCCGTCTTTTTCTGTGTGGAAGAGCCAGACATATCAACGTATGACTA
TCTTGAACGCCTTTTCAGATTTGCTTCTTGTTCGAAGTCCGCCTTTGTTC
TCATGCTCATCTACATCGATCGATTCCTTGTCTCCGGTGCTGCTCCCTTC
AACCCGTTTTCCATGCACAGAATAATTATTTCTGCACTTGTTGTTGCCAT
TAAGAGTACTGAAGATGTTGTAAGCACGTCTTCGCACTATGCTAGAGTGG
GTGGCGCTGCCTCTGCGGCTGAAATGAATACCCTTGAAATAGTCTTCTTT
GAGTGCATTGAATTTGAAGGCTTTGTTAGTCCAACACTCTACGGAACGTA
CCATGCCCAGTTGGAGTTGTTTGTTCCACTAGTCTGCATTCCTCGTACTC
CCACTAATATGCAGTATCTCAGAGGTTTGGCCCGTTTCAGTGAGAAAGGA
AGTATGCAACTCGATGGATTACGATGTCACCGATCGGCGCGCAACCCATA
G
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Coding sequence (CDS) from alignment at ScGOVlb_425:1236858..1237508-

>Gvermi12729.t1 ID=Gvermi12729.t1|Name=Gvermi12729.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=651bp|location=Sequence derived from alignment at ScGOVlb_425:1236858..1237508- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATACCACCAATCCCCAAATCCTCTCCCCCCAAACAAGGACTCCAGC
TTTGGGGGACAGTGACGTTCTCTTCCTCGCCGCATTGAGCACAGCTCTTG
AACTTCGGGTGAATTTGGATCCCTTTGCATTTCCCTCCACATGTGAGCCC
CTTTCCGTCTTTTTCTGTGTGGAAGAGCCAGACATATCAACGTATGACTA
TCTTGAACGCCTTTTCAGATTTGCTTCTTGTTCGAAGTCCGCCTTTGTTC
TCATGCTCATCTACATCGATCGATTCCTTGTCTCCGGTGCTGCTCCCTTC
AACCCGTTTTCCATGCACAGAATAATTATTTCTGCACTTGTTGTTGCCAT
TAAGAGTACTGAAGATGTTGTAAGCACGTCTTCGCACTATGCTAGAGTGG
GTGGCGCTGCCTCTGCGGCTGAAATGAATACCCTTGAAATAGTCTTCTTT
GAGTGCATTGAATTTGAAGGCTTTGTTAGTCCAACACTCTACGGAACGTA
CCATGCCCAGTTGGAGTTGTTTGTTCCACTAGTCTGCATTCCTCGTACTC
CCACTAATATGCAGTATCTCAGAGGTTTGGCCCGTTTCAGTGAGAAAGGA
AGTATGCAACTCGATGGATTACGATGTCACCGATCGGCGCGCAACCCATA
G
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