Gvermi12727.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12727.t1
Unique NameGvermi12727.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1227193..1227627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706422.1
Preferred nameSNRPC
PFAMszf-U1
Max annot lvl2759|Eukaryota
KEGG koko:K11095
KEGG Pathwayko03040,map03040
KEGG ModuleM00351
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000381,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005685,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0009987,GO:0010467,GO:0010468,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030627,GO:0031323,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0042802,GO:0042803,GO:0043021,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045292,GO:0046483,GO:0046872,GO:0046914,GO:0046983,GO:0048024,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070990,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1990446,GO:1990904
Evalue5.05e-30
EggNOG OGsCOG5136@1|root,KOG3454@2759|Eukaryota
Descriptionpre-mRNA 5'-splice site binding
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12727Gvermi12727Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1227193..1227627 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12727.t1.stop1Gvermi12727.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1227193..1227195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12727.t1.CDS1Gvermi12727.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1227193..1227627 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12727.t1.exon1Gvermi12727.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1227193..1227627 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12727.t1.start1Gvermi12727.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1227625..1227627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12727.t1Gvermi12727.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1227193..1227627 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12727.t1 ID=Gvermi12727.t1|Name=Gvermi12727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=145bp
MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKFNVCEYYRQYIGKQLQQQI
DQIVQQFEINVANGLIRPTYGVPPAVKAHMVLQKAQENGDVPKHLDHPTE
NQPHIPQNASQALQQRTVPTQLSNNQSRSQATDTQSPVPVIEPK*
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spliced messenger RNA

>Gvermi12727.t1 ID=Gvermi12727.t1|Name=Gvermi12727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=435bp|location=Sequence derived from alignment at ScGOVlb_425:1227193..1227627- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAAATGCTACTGCGATTACTGCGACGTCTTCCTCACCAACGACTC
CGTCGCCGTGCGCAAGCAGCACAATGAAGGAAACCGCCACAAATTCAACG
TATGCGAGTATTACCGACAGTACATTGGCAAACAGCTACAACAACAGATC
GATCAAATAGTGCAACAGTTCGAGATCAATGTGGCAAACGGACTCATTCG
GCCTACGTACGGTGTACCGCCCGCTGTCAAAGCTCATATGGTTCTTCAAA
AAGCACAAGAAAACGGCGACGTGCCCAAGCATCTGGACCACCCGACCGAA
AACCAGCCACACATTCCCCAAAACGCTTCGCAGGCCTTGCAACAACGTAC
TGTCCCCACCCAACTTTCGAATAATCAGTCTCGGTCGCAAGCTACAGACA
CGCAAAGCCCTGTTCCCGTCATCGAGCCAAAGTGA
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protein sequence of Gvermi12727.t1

>Gvermi12727.t1 ID=Gvermi12727.t1|Name=Gvermi12727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=145bp
MGKCYCDYCDVFLTNDSVAVRKQHNEGNRHKFNVCEYYRQYIGKQLQQQI
DQIVQQFEINVANGLIRPTYGVPPAVKAHMVLQKAQENGDVPKHLDHPTE
NQPHIPQNASQALQQRTVPTQLSNNQSRSQATDTQSPVPVIEPK*
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mRNA from alignment at ScGOVlb_425:1227193..1227627-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12727.t1 ID=Gvermi12727.t1|Name=Gvermi12727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=435bp|location=Sequence derived from alignment at ScGOVlb_425:1227193..1227627- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAAATGCTACTGCGATTACTGCGACGTCTTCCTCACCAACGACTC
CGTCGCCGTGCGCAAGCAGCACAATGAAGGAAACCGCCACAAATTCAACG
TATGCGAGTATTACCGACAGTACATTGGCAAACAGCTACAACAACAGATC
GATCAAATAGTGCAACAGTTCGAGATCAATGTGGCAAACGGACTCATTCG
GCCTACGTACGGTGTACCGCCCGCTGTCAAAGCTCATATGGTTCTTCAAA
AAGCACAAGAAAACGGCGACGTGCCCAAGCATCTGGACCACCCGACCGAA
AACCAGCCACACATTCCCCAAAACGCTTCGCAGGCCTTGCAACAACGTAC
TGTCCCCACCCAACTTTCGAATAATCAGTCTCGGTCGCAAGCTACAGACA
CGCAAAGCCCTGTTCCCGTCATCGAGCCAAAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1227193..1227627-

>Gvermi12727.t1 ID=Gvermi12727.t1|Name=Gvermi12727.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=435bp|location=Sequence derived from alignment at ScGOVlb_425:1227193..1227627- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCAAATGCTACTGCGATTACTGCGACGTCTTCCTCACCAACGACTC
CGTCGCCGTGCGCAAGCAGCACAATGAAGGAAACCGCCACAAATTCAACG
TATGCGAGTATTACCGACAGTACATTGGCAAACAGCTACAACAACAGATC
GATCAAATAGTGCAACAGTTCGAGATCAATGTGGCAAACGGACTCATTCG
GCCTACGTACGGTGTACCGCCCGCTGTCAAAGCTCATATGGTTCTTCAAA
AAGCACAAGAAAACGGCGACGTGCCCAAGCATCTGGACCACCCGACCGAA
AACCAGCCACACATTCCCCAAAACGCTTCGCAGGCCTTGCAACAACGTAC
TGTCCCCACCCAACTTTCGAATAATCAGTCTCGGTCGCAAGCTACAGACA
CGCAAAGCCCTGTTCCCGTCATCGAGCCAAAGTGA
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