Gvermi12724.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12724.t1
Unique Name	Gvermi12724.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	299

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1221443..1222339 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706509.1
PFAMs	adh_short
Max annot lvl	2759\|Eukaryota
Evalue	1.54e-108
EggNOG OGs	COG1028@1\|root,KOG0725@2759\|Eukaryota
Description	oxidation-reduction process
COG category	IQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12724	Gvermi12724	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_425 1221443..1222339 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12724.t1.start1	Gvermi12724.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_425 1221443..1221445 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12724.t1.CDS1	Gvermi12724.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_425 1221443..1222339 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12724.t1.exon1	Gvermi12724.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_425 1221443..1222339 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12724.t1.stop1	Gvermi12724.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_425 1222337..1222339 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12724.t1	Gvermi12724.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_425 1221443..1222339 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_425:1221443..1222339+
coding sequence from alignment at ScGOVlb_425:1221443..1222339+

mRNA sequence

>Gvermi12724.t1 ID=Gvermi12724.t1|Name=Gvermi12724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=299bp
MPSSTPLKQFQGRVAVITGASRGIGREIALAFARAGCSVVIAAKSVKESP
TLPGTIYTVAEEVRQCGVDALPVQCDVRNPENIHNLMKKACSTFGRIDYL
VCNSGALWWKNVESTPMSRYDLVHQVNVRATFCCVHEVLPIMKSQGFGRI
IVMSPPVDLGWLRGKVAYGISKYGMTMIAMGVAKEVDGTGISINALWPAT
MIESYATKNFKMSARSQWRKATILSDCVMKMVQEPPEVLNGEAIIDEEYL
RSRGVTDFKKYRCVAEVEPTKVWPPTDEAIMLGATKAKNVPPGISARL*

spliced messenger RNA

>Gvermi12724.t1 ID=Gvermi12724.t1|Name=Gvermi12724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=897bp|location=Sequence derived from alignment at ScGOVlb_425:1221443..1222339+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCATCGACTCCTTTGAAACAATTTCAAGGACGGGTCGCCGTAAT
TACGGGCGCAAGCAGAGGAATCGGGCGTGAGATTGCCTTGGCATTTGCCA
GAGCCGGCTGTAGTGTCGTTATAGCCGCGAAAAGCGTCAAAGAATCACCA
ACTCTTCCAGGGACAATATACACAGTGGCTGAAGAAGTTCGTCAATGTGG
AGTTGATGCCCTTCCTGTACAATGCGATGTTCGCAATCCCGAAAACATTC
ATAACTTGATGAAGAAGGCCTGCAGCACGTTTGGTAGAATTGATTACCTT
GTCTGCAACAGCGGTGCTCTATGGTGGAAGAACGTAGAATCTACTCCAAT
GTCTCGATACGATCTGGTACATCAAGTAAATGTACGTGCTACCTTTTGCT
GCGTTCACGAAGTTCTGCCCATCATGAAAAGTCAAGGATTCGGTCGAATA
ATTGTCATGAGTCCTCCTGTTGATTTGGGATGGCTTCGCGGTAAGGTTGC
GTACGGCATCTCTAAGTATGGTATGACAATGATCGCTATGGGTGTGGCTA
AAGAGGTAGACGGGACTGGCATCAGTATAAACGCCTTGTGGCCCGCAACC
ATGATAGAGAGTTACGCGACAAAGAACTTCAAAATGTCCGCGCGCAGTCA
ATGGAGAAAGGCTACTATTCTATCAGACTGTGTGATGAAGATGGTACAAG
AGCCACCAGAAGTGTTGAATGGCGAGGCAATTATTGACGAGGAATATCTG
CGCAGCAGAGGCGTCACTGATTTCAAAAAGTATCGTTGCGTTGCAGAAGT
CGAACCGACTAAAGTTTGGCCCCCCACGGATGAAGCGATAATGTTGGGAG
CTACTAAAGCCAAGAACGTTCCTCCAGGAATAAGTGCTCGTCTCTAG

protein sequence of Gvermi12724.t1

>Gvermi12724.t1 ID=Gvermi12724.t1|Name=Gvermi12724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=299bp
MPSSTPLKQFQGRVAVITGASRGIGREIALAFARAGCSVVIAAKSVKESP
TLPGTIYTVAEEVRQCGVDALPVQCDVRNPENIHNLMKKACSTFGRIDYL
VCNSGALWWKNVESTPMSRYDLVHQVNVRATFCCVHEVLPIMKSQGFGRI
IVMSPPVDLGWLRGKVAYGISKYGMTMIAMGVAKEVDGTGISINALWPAT
MIESYATKNFKMSARSQWRKATILSDCVMKMVQEPPEVLNGEAIIDEEYL
RSRGVTDFKKYRCVAEVEPTKVWPPTDEAIMLGATKAKNVPPGISARL*

mRNA from alignment at ScGOVlb_425:1221443..1222339+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12724.t1 ID=Gvermi12724.t1|Name=Gvermi12724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=897bp|location=Sequence derived from alignment at ScGOVlb_425:1221443..1222339+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCATCATCGACTCCTTTGAAACAATTTCAAGGACGGGTCGCCGTAAT
TACGGGCGCAAGCAGAGGAATCGGGCGTGAGATTGCCTTGGCATTTGCCA
GAGCCGGCTGTAGTGTCGTTATAGCCGCGAAAAGCGTCAAAGAATCACCA
ACTCTTCCAGGGACAATATACACAGTGGCTGAAGAAGTTCGTCAATGTGG
AGTTGATGCCCTTCCTGTACAATGCGATGTTCGCAATCCCGAAAACATTC
ATAACTTGATGAAGAAGGCCTGCAGCACGTTTGGTAGAATTGATTACCTT
GTCTGCAACAGCGGTGCTCTATGGTGGAAGAACGTAGAATCTACTCCAAT
GTCTCGATACGATCTGGTACATCAAGTAAATGTACGTGCTACCTTTTGCT
GCGTTCACGAAGTTCTGCCCATCATGAAAAGTCAAGGATTCGGTCGAATA
ATTGTCATGAGTCCTCCTGTTGATTTGGGATGGCTTCGCGGTAAGGTTGC
GTACGGCATCTCTAAGTATGGTATGACAATGATCGCTATGGGTGTGGCTA
AAGAGGTAGACGGGACTGGCATCAGTATAAACGCCTTGTGGCCCGCAACC
ATGATAGAGAGTTACGCGACAAAGAACTTCAAAATGTCCGCGCGCAGTCA
ATGGAGAAAGGCTACTATTCTATCAGACTGTGTGATGAAGATGGTACAAG
AGCCACCAGAAGTGTTGAATGGCGAGGCAATTATTGACGAGGAATATCTG
CGCAGCAGAGGCGTCACTGATTTCAAAAAGTATCGTTGCGTTGCAGAAGT
CGAACCGACTAAAGTTTGGCCCCCCACGGATGAAGCGATAATGTTGGGAG
CTACTAAAGCCAAGAACGTTCCTCCAGGAATAAGTGCTCGTCTCTAG

Coding sequence (CDS) from alignment at ScGOVlb_425:1221443..1222339+

>Gvermi12724.t1 ID=Gvermi12724.t1|Name=Gvermi12724.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=897bp|location=Sequence derived from alignment at ScGOVlb_425:1221443..1222339+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCATCATCGACTCCTTTGAAACAATTTCAAGGACGGGTCGCCGTAAT
TACGGGCGCAAGCAGAGGAATCGGGCGTGAGATTGCCTTGGCATTTGCCA
GAGCCGGCTGTAGTGTCGTTATAGCCGCGAAAAGCGTCAAAGAATCACCA
ACTCTTCCAGGGACAATATACACAGTGGCTGAAGAAGTTCGTCAATGTGG
AGTTGATGCCCTTCCTGTACAATGCGATGTTCGCAATCCCGAAAACATTC
ATAACTTGATGAAGAAGGCCTGCAGCACGTTTGGTAGAATTGATTACCTT
GTCTGCAACAGCGGTGCTCTATGGTGGAAGAACGTAGAATCTACTCCAAT
GTCTCGATACGATCTGGTACATCAAGTAAATGTACGTGCTACCTTTTGCT
GCGTTCACGAAGTTCTGCCCATCATGAAAAGTCAAGGATTCGGTCGAATA
ATTGTCATGAGTCCTCCTGTTGATTTGGGATGGCTTCGCGGTAAGGTTGC
GTACGGCATCTCTAAGTATGGTATGACAATGATCGCTATGGGTGTGGCTA
AAGAGGTAGACGGGACTGGCATCAGTATAAACGCCTTGTGGCCCGCAACC
ATGATAGAGAGTTACGCGACAAAGAACTTCAAAATGTCCGCGCGCAGTCA
ATGGAGAAAGGCTACTATTCTATCAGACTGTGTGATGAAGATGGTACAAG
AGCCACCAGAAGTGTTGAATGGCGAGGCAATTATTGACGAGGAATATCTG
CGCAGCAGAGGCGTCACTGATTTCAAAAAGTATCGTTGCGTTGCAGAAGT
CGAACCGACTAAAGTTTGGCCCCCCACGGATGAAGCGATAATGTTGGGAG
CTACTAAAGCCAAGAACGTTCCTCCAGGAATAAGTGCTCGTCTCTAG