Gvermi12720.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12720.t1
Unique NameGvermi12720.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length89
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1203935..1204336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708257.1
Preferred nameDPH3
PFAMszf-CSL
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00162,ko:K15455
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
GOsGO:0002097,GO:0002098,GO:0002791,GO:0002792,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006448,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0009055,GO:0009058,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016070,GO:0016491,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0022900,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0032879,GO:0032880,GO:0034248,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051171,GO:0051223,GO:0051224,GO:0051246,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070201,GO:0071704,GO:0080090,GO:0090087,GO:0090304,GO:1900247,GO:1901360,GO:1901564,GO:1903530,GO:1903531,GO:1904950,GO:2000112,GO:2000765
Evalue5.19e-28
EggNOG OGsCOG5216@1|root,KOG2923@2759|Eukaryota
EC1.2.4.1
Descriptionpeptidyl-diphthamide biosynthetic process from peptidyl-histidine
COG categoryO
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03012,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12720Gvermi12720Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1203935..1204336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12720.t1Gvermi12720.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1203935..1204336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12720.t1.CDS1Gvermi12720.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1203935..1203937 +
Gvermi12720.t1.CDS2Gvermi12720.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1204073..1204336 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12720.t1.exon1Gvermi12720.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1203935..1203937 +
Gvermi12720.t1.exon2Gvermi12720.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1204073..1204336 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12720.t1.start1Gvermi12720.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1203935..1203937 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12720.t1.intron1Gvermi12720.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1203938..1204072 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12720.t1.stop1Gvermi12720.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1204334..1204336 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12720.t1 ID=Gvermi12720.t1|Name=Gvermi12720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=89bp
MPVYDDVDLEDMSWDEGLLAYVYQCPCGDVFQITPAELRAGEEIARCPSC
TLVVRVIYDLDELNDGAGGDGGGDERLRVRCAPEEFEH*
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spliced messenger RNA

>Gvermi12720.t1 ID=Gvermi12720.t1|Name=Gvermi12720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=267bp|location=Sequence derived from alignment at ScGOVlb_425:1203935..1204336+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTTTACGACGACGTAGACCTCGAAGATATGAGCTGGGACGAAGG
GCTGCTGGCGTATGTGTACCAATGCCCGTGCGGGGACGTGTTTCAGATCA
CGCCGGCGGAGCTTCGCGCGGGCGAGGAGATCGCGCGCTGCCCTAGCTGC
ACGCTGGTCGTGCGCGTCATCTATGATCTGGACGAGCTAAACGACGGCGC
AGGGGGGGACGGGGGGGGGGACGAGCGGTTGCGCGTGCGGTGCGCCCCGG
AAGAGTTCGAGCACTGA
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protein sequence of Gvermi12720.t1

>Gvermi12720.t1 ID=Gvermi12720.t1|Name=Gvermi12720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=89bp
MPVYDDVDLEDMSWDEGLLAYVYQCPCGDVFQITPAELRAGEEIARCPSC
TLVVRVIYDLDELNDGAGGDGGGDERLRVRCAPEEFEH*
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mRNA from alignment at ScGOVlb_425:1203935..1204336+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12720.t1 ID=Gvermi12720.t1|Name=Gvermi12720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=402bp|location=Sequence derived from alignment at ScGOVlb_425:1203935..1204336+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTAAGTAAACCGGCGCGTCAAAGGGCGACACGAGCAGGGACACCGGG
TGGTGACGACGAGTGGCGGCTTCTGACGGCGTGAGGCGGCTTCTGACGGC
GTGAGGCGGCTTGCATTCGGTCTGGTGCGCGCGAATAGCCCGTTTACGAC
GACGTAGACCTCGAAGATATGAGCTGGGACGAAGGGCTGCTGGCGTATGT
GTACCAATGCCCGTGCGGGGACGTGTTTCAGATCACGCCGGCGGAGCTTC
GCGCGGGCGAGGAGATCGCGCGCTGCCCTAGCTGCACGCTGGTCGTGCGC
GTCATCTATGATCTGGACGAGCTAAACGACGGCGCAGGGGGGGACGGGGG
GGGGGACGAGCGGTTGCGCGTGCGGTGCGCCCCGGAAGAGTTCGAGCACT
GA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1203935..1204336+

>Gvermi12720.t1 ID=Gvermi12720.t1|Name=Gvermi12720.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=267bp|location=Sequence derived from alignment at ScGOVlb_425:1203935..1204336+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCCGTTTACGACGACGTAGACCTCGAAGATATGAGCTGGGACGAAGG
GCTGCTGGCGTATGTGTACCAATGCCCGTGCGGGGACGTGTTTCAGATCA
CGCCGGCGGAGCTTCGCGCGGGCGAGGAGATCGCGCGCTGCCCTAGCTGC
ACGCTGGTCGTGCGCGTCATCTATGATCTGGACGAGCTAAACGACGGCGC
AGGGGGGGACGGGGGGGGGGACGAGCGGTTGCGCGTGCGGTGCGCCCCGG
AAGAGTTCGAGCACTGA
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